RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 CRYGAP11844 174 aa11.86□□□□□ -0.51
PTPRF-209ENST00000438120 PKD1L2Q7Z442 2459 aa11.86□□□□□ -0.51
PTPRF-209ENST00000438120 MOBPQ13875 183 aa11.85□□□□□ -0.51
PTPRF-209ENST00000438120 CHD8Q9HCK8 2581 aa11.85□□□□□ -0.51
PTPRF-209ENST00000438120 KRTAP24-1Q3LI83 254 aa11.84□□□□□ -0.51
PTPRF-209ENST00000438120 PMAIP1Q13794 54 aa11.84□□□□□ -0.51
PTPRF-209ENST00000438120 LIMD2Q9BT23 127 aa11.84□□□□□ -0.51
PTPRF-209ENST00000438120 SMIM29Q86T20 159 aa11.84□□□□□ -0.51
PTPRF-209ENST00000438120 SPATA3Q8NHX4 192 aa11.84□□□□□ -0.51
PTPRF-209ENST00000438120 SPTBN4Q9H254 2564 aa11.83□□□□□ -0.52
PTPRF-209ENST00000438120 PHF5AQ7RTV0 110 aaKnown RBP11.82□□□□□ -0.52
PTPRF-209ENST00000438120 C1orf64Q8NEQ6 169 aa11.82□□□□□ -0.52
PTPRF-209ENST00000438120 LINC01546A6NGU7 62 aa11.8□□□□□ -0.52
PTPRF-209ENST00000438120 CHTF8P0CG12 524 aa11.8□□□□□ -0.52
PTPRF-209ENST00000438120 FAM218AQ96MZ4 157 aa11.8□□□□□ -0.52
PTPRF-209ENST00000438120 PTPRBP23467 1997 aa11.79□□□□□ -0.52
PTPRF-209ENST00000438120 MTORP42345 2549 aa11.77□□□□□ -0.52
PTPRF-209ENST00000438120 CDIP1Q9H305 208 aa11.77□□□□□ -0.53
PTPRF-209ENST00000438120 CXCL6P80162 114 aa11.76□□□□□ -0.53
PTPRF-209ENST00000438120 C7orf65Q6ZTY9 151 aa11.75□□□□□ -0.53
PTPRF-209ENST00000438120 POLQO75417 2590 aa11.74□□□□□ -0.53
PTPRF-209ENST00000438120 ST20-AS1Q8NBB2 130 aa11.73□□□□□ -0.53
PTPRF-209ENST00000438120 COL4A2P08572 1712 aa11.72□□□□□ -0.53
PTPRF-209ENST00000438120 RTL8CO15255 209 aa11.72□□□□□ -0.53
PTPRF-209ENST00000438120 hDV103S1A0JD37 113 aa11.72□□□□□ -0.53
PTPRF-209ENST00000438120 LINC00588Q9Y4M8 146 aa11.72□□□□□ -0.53
PTPRF-209ENST00000438120 SMCPP49901 116 aaPredicted RBP11.72□□□□□ -0.53
PTPRF-209ENST00000438120 IGLV5-45A0A087WSX0 123 aa11.71□□□□□ -0.53
PTPRF-209ENST00000438120 COL27A1Q8IZC6 1860 aaPredicted RBP11.71□□□□□ -0.53
PTPRF-209ENST00000438120 ELOF1P60002 83 aaKnown RBP11.71□□□□□ -0.54
PTPRF-209ENST00000438120 Q8NAQ8 132 aa11.7□□□□□ -0.54
PTPRF-209ENST00000438120 EPM2AB3EWF7 344 aa11.69□□□□□ -0.54
PTPRF-209ENST00000438120 NBDYA0A0U1RRE5 68 aa11.69□□□□□ -0.54
PTPRF-209ENST00000438120 LINC00476Q8WZB0 136 aa11.68□□□□□ -0.54
PTPRF-209ENST00000438120 H3BNG1 76 aa11.68□□□□□ -0.54
PTPRF-209ENST00000438120 RPL37AP61513 92 aaKnown RBP11.67□□□□□ -0.54
PTPRF-209ENST00000438120 Q6ZRX8 168 aa11.67□□□□□ -0.54
PTPRF-209ENST00000438120 FASNP49327 2511 aaKnown RBP11.66□□□□□ -0.54
PTPRF-209ENST00000438120 ACANP16112 2415 aa11.65□□□□□ -0.54
PTPRF-209ENST00000438120 FAM168BA1KXE4 195 aa11.64□□□□□ -0.55
PTPRF-209ENST00000438120 C16orf90A8MZG2 172 aa11.63□□□□□ -0.55
PTPRF-209ENST00000438120 Q6ZQT0 140 aa11.62□□□□□ -0.55
PTPRF-209ENST00000438120 Q6ZRP5 223 aa11.62□□□□□ -0.55
PTPRF-209ENST00000438120 TYMSOSQ8TAI1 123 aa11.62□□□□□ -0.55
PTPRF-209ENST00000438120 FAM229AH3BQW9 127 aa11.61□□□□□ -0.55
PTPRF-209ENST00000438120 ANKRD17O75179 2603 aaKnown RBP11.6□□□□□ -0.55
PTPRF-209ENST00000438120 A0A1B0GU69 56 aa11.6□□□□□ -0.55
PTPRF-209ENST00000438120 Q8NBF4 154 aa11.59□□□□□ -0.55
PTPRF-209ENST00000438120 PRO0461Q9UI25 63 aa11.58□□□□□ -0.56
PTPRF-209ENST00000438120 SPAG11AQ6PDA7 123 aa11.58□□□□□ -0.56
PTPRF-209ENST00000438120 LINC00313P59037 77 aa11.58□□□□□ -0.56
PTPRF-209ENST00000438120 TP53AIP1Q9HCN2 124 aa11.58□□□□□ -0.56
PTPRF-209ENST00000438120 GVQW2A0A096LPI5 108 aaPredicted RBP11.56□□□□□ -0.56
PTPRF-209ENST00000438120 ACYP2P14621 99 aa11.55□□□□□ -0.56
PTPRF-209ENST00000438120 IGLV8-61A0A075B6I0 122 aa11.54□□□□□ -0.56
PTPRF-209ENST00000438120 Q96NJ1 140 aa11.53□□□□□ -0.56
PTPRF-209ENST00000438120 TM2D3Q9BRN9 247 aa11.53□□□□□ -0.56
PTPRF-209ENST00000438120 SERTAD4-AS1Q5TG53 156 aa11.53□□□□□ -0.56
PTPRF-209ENST00000438120 BCE1O60756 84 aa11.52□□□□□ -0.56
PTPRF-209ENST00000438120 LOC110117498A0A087WWA1 95 aa11.52□□□□□ -0.57
PTPRF-209ENST00000438120 DNAH10OSP0CZ25 163 aa11.52□□□□□ -0.57
PTPRF-209ENST00000438120 LITAFQ99732 161 aa11.51□□□□□ -0.57
PTPRF-209ENST00000438120 VPREB1P12018 145 aa11.5□□□□□ -0.57
PTPRF-209ENST00000438120 KRTAP10-11P60412 298 aa11.5□□□□□ -0.57
PTPRF-209ENST00000438120 F8P00451 2351 aa11.5□□□□□ -0.57
PTPRF-209ENST00000438120 WWC2-AS2Q96NR7 200 aa11.49□□□□□ -0.57
PTPRF-209ENST00000438120 TRAV22A0A0B4J277 110 aa11.48□□□□□ -0.57
PTPRF-209ENST00000438120 PCSK5Q92824 1860 aa11.47□□□□□ -0.57
PTPRF-209ENST00000438120 CSNK1G2-AS1Q8NCQ2 148 aa11.47□□□□□ -0.57
PTPRF-209ENST00000438120 PLA2G1BP04054 148 aaKnown RBP11.46□□□□□ -0.57
PTPRF-209ENST00000438120 IGLV6-57P01721 117 aa11.46□□□□□ -0.58
PTPRF-209ENST00000438120 C4orf26Q17RF5 130 aa11.45□□□□□ -0.58
PTPRF-209ENST00000438120 TRBV7-4A0A0J9YYF1 115 aa11.44□□□□□ -0.58
PTPRF-209ENST00000438120 A0A1B0GW54 56 aa11.44□□□□□ -0.58
PTPRF-209ENST00000438120 K7EIL1 84 aa11.44□□□□□ -0.58
PTPRF-209ENST00000438120 K7EQZ3 153 aa11.43□□□□□ -0.58
PTPRF-209ENST00000438120 EIF4EBP3O60516 100 aaPredicted RBP11.42□□□□□ -0.58
PTPRF-209ENST00000438120 IGLV1-50A0A075B6I6 118 aa11.42□□□□□ -0.58
PTPRF-209ENST00000438120 KLK9Q2XQG4 91 aa11.41□□□□□ -0.58
PTPRF-209ENST00000438120 KRTAP10-3P60369 221 aa11.41□□□□□ -0.58
PTPRF-209ENST00000438120 ATP11AUNQ6ZP68 121 aa11.41□□□□□ -0.58
PTPRF-209ENST00000438120 A0A0G2JQZ4 141 aa11.39□□□□□ -0.59
PTPRF-209ENST00000438120 A0A1W2PNN7 141 aa11.39□□□□□ -0.59
PTPRF-209ENST00000438120 J3QL48 77 aa11.38□□□□□ -0.59
PTPRF-209ENST00000438120 A8MWP4 228 aa11.37□□□□□ -0.59
PTPRF-209ENST00000438120 H3BPC8 53 aa11.36□□□□□ -0.59
PTPRF-209ENST00000438120 C15orf56Q8N910 161 aa11.36□□□□□ -0.59
PTPRF-209ENST00000438120 DSCR10P59022 87 aa11.35□□□□□ -0.59
PTPRF-209ENST00000438120 EPG5Q9HCE0 2579 aa11.35□□□□□ -0.59
PTPRF-209ENST00000438120 PRO0628Q9UI54 55 aa11.34□□□□□ -0.59
PTPRF-209ENST00000438120 KCNQ1DNQ9H478 68 aa11.34□□□□□ -0.59
PTPRF-209ENST00000438120 SMR3BP02814 79 aaPredicted RBP11.34□□□□□ -0.59
PTPRF-209ENST00000438120 GIG44P09565 113 aaPredicted RBP11.34□□□□□ -0.59
PTPRF-209ENST00000438120 MRPL34Q9BQ48 92 aaKnown RBP11.34□□□□□ -0.59
PTPRF-209ENST00000438120 IGFL1Q6UW32 110 aa11.34□□□□□ -0.59
PTPRF-209ENST00000438120 ANAPC11Q9NYG5 84 aa11.33□□□□□ -0.6
PTPRF-209ENST00000438120 C9orf92A6NGG3 77 aa11.32□□□□□ -0.6
PTPRF-209ENST00000438120 C9orf129Q5T035 196 aaKnown RBP11.32□□□□□ -0.6
PTPRF-209ENST00000438120 LINC00528Q8N1L1 170 aa11.32□□□□□ -0.6
PTPRF-209ENST00000438120 A0A096LNT2 108 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms