RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 DEFB121Q5J5C9 76 aa6.5□□□□□ -1.37
CUX1-206ENST00000437600 LINC00612Q8N6U2 182 aa6.5□□□□□ -1.37
CUX1-206ENST00000437600 EGFEM1PQ0D2K5 195 aa6.5□□□□□ -1.37
CUX1-206ENST00000437600 C6orf223Q8N319 242 aa6.5□□□□□ -1.37
CUX1-206ENST00000437600 SMCR5Q8TEV8 140 aa6.5□□□□□ -1.37
CUX1-206ENST00000437600 DPH3Q96FX2 82 aa6.5□□□□□ -1.37
CUX1-206ENST00000437600 SLPIP03973 132 aa6.49□□□□□ -1.37
CUX1-206ENST00000437600 SS18Q15532 418 aa6.49□□□□□ -1.37
CUX1-206ENST00000437600 LYRM9A8MSI8 78 aa6.48□□□□□ -1.37
CUX1-206ENST00000437600 SMIM11BQ8TCY0 68 aa6.48□□□□□ -1.37
CUX1-206ENST00000437600 KLK12Q9UKR0 248 aa6.48□□□□□ -1.37
CUX1-206ENST00000437600 SPART-AS1P0CW21 52 aa6.48□□□□□ -1.37
CUX1-206ENST00000437600 MIFP14174 115 aa6.48□□□□□ -1.37
CUX1-206ENST00000437600 CHCHD10Q8WYQ3 142 aaPredicted RBP6.48□□□□□ -1.37
CUX1-206ENST00000437600 COX7A2LO14548 114 aa6.47□□□□□ -1.37
CUX1-206ENST00000437600 REG3AQ06141 175 aa6.47□□□□□ -1.37
CUX1-206ENST00000437600 C9orf129Q5T035 196 aaKnown RBP6.47□□□□□ -1.37
CUX1-206ENST00000437600 A0A087WYN8 130 aa6.47□□□□□ -1.37
CUX1-206ENST00000437600 BAALC-AS2P0C853 105 aa6.47□□□□□ -1.37
CUX1-206ENST00000437600 IMUPQ9GZP8 106 aa6.47□□□□□ -1.37
CUX1-206ENST00000437600 K7EIL1 84 aa6.47□□□□□ -1.37
CUX1-206ENST00000437600 CRPP02741 224 aa6.47□□□□□ -1.37
CUX1-206ENST00000437600 C10orf25Q5T742 122 aa6.46□□□□□ -1.38
CUX1-206ENST00000437600 C2orf48Q96LS8 159 aa6.46□□□□□ -1.38
CUX1-206ENST00000437600 DSCR8Q96T75 97 aa6.46□□□□□ -1.38
CUX1-206ENST00000437600 FBN3Q75N90 2809 aa6.46□□□□□ -1.38
CUX1-206ENST00000437600 ACYP1P07311 99 aa6.46□□□□□ -1.38
CUX1-206ENST00000437600 LINC00643Q86TS7 51 aa6.46□□□□□ -1.38
CUX1-206ENST00000437600 Q6ZTC4 211 aa6.45□□□□□ -1.38
CUX1-206ENST00000437600 A0A1B0GUV1 79 aa6.44□□□□□ -1.38
CUX1-206ENST00000437600 UNQ6190/PRO20217Q6UXQ8 127 aa6.44□□□□□ -1.38
CUX1-206ENST00000437600 Q8NDZ9 215 aa6.44□□□□□ -1.38
CUX1-206ENST00000437600 A0A0J9YWU9 116 aa6.44□□□□□ -1.38
CUX1-206ENST00000437600 A0A0U1RQV1 116 aa6.44□□□□□ -1.38
CUX1-206ENST00000437600 COX7CP15954 63 aa6.44□□□□□ -1.38
CUX1-206ENST00000437600 NANOS2P60321 138 aaKnown RBP6.44□□□□□ -1.38
CUX1-206ENST00000437600 C22orf24Q9Y442 160 aa6.44□□□□□ -1.38
CUX1-206ENST00000437600 hADV29S1A0JD25 119 aa6.43□□□□□ -1.38
CUX1-206ENST00000437600 IBA57-AS1B1ANH7 110 aa6.43□□□□□ -1.38
CUX1-206ENST00000437600 LECT2O14960 151 aa6.43□□□□□ -1.38
CUX1-206ENST00000437600 TRAV13-2A0A0B4J235 113 aa6.43□□□□□ -1.38
CUX1-206ENST00000437600 CRYGAP11844 174 aa6.43□□□□□ -1.38
CUX1-206ENST00000437600 KIAA0087Q14695 138 aa6.43□□□□□ -1.38
CUX1-206ENST00000437600 C4orf48Q5BLP8 95 aa6.43□□□□□ -1.38
CUX1-206ENST00000437600 TRACP01848 142 aa6.42□□□□□ -1.38
CUX1-206ENST00000437600 TMEM258P61165 79 aa6.42□□□□□ -1.38
CUX1-206ENST00000437600 FAM19A1Q7Z5A9 133 aa6.42□□□□□ -1.38
CUX1-206ENST00000437600 NCR3O14931 201 aa6.42□□□□□ -1.38
CUX1-206ENST00000437600 CD164L2Q6UWJ8 174 aa6.42□□□□□ -1.38
CUX1-206ENST00000437600 COPS9Q8WXC6 57 aa6.42□□□□□ -1.38
CUX1-206ENST00000437600 CYSTM1Q9H1C7 97 aa6.42□□□□□ -1.38
CUX1-206ENST00000437600 RPL28P46779 137 aaKnown RBP6.41□□□□□ -1.38
CUX1-206ENST00000437600 WFDC10BQ8IUB3 73 aa6.41□□□□□ -1.38
CUX1-206ENST00000437600 XAGE1AQ9HD64 81 aa6.41□□□□□ -1.38
CUX1-206ENST00000437600 DNAH7Q8WXX0 4024 aa6.4□□□□□ -1.38
CUX1-206ENST00000437600 HIGD2BQ4VC39 106 aa6.4□□□□□ -1.38
CUX1-206ENST00000437600 LYPD5Q6UWN5 251 aa6.4□□□□□ -1.38
CUX1-206ENST00000437600 ENHOQ6UWT2 76 aa6.4□□□□□ -1.38
CUX1-206ENST00000437600 Q8IZM0 81 aa6.4□□□□□ -1.38
CUX1-206ENST00000437600 C14orf132Q9NPU4 83 aa6.4□□□□□ -1.38
CUX1-206ENST00000437600 DNAL4O96015 105 aa6.4□□□□□ -1.39
CUX1-206ENST00000437600 SDIM1Q6ZPB5 146 aa6.4□□□□□ -1.39
CUX1-206ENST00000437600 KPRPQ5T749 579 aaPredicted RBP6.39□□□□□ -1.39
CUX1-206ENST00000437600 CXCL5P42830 114 aa6.39□□□□□ -1.39
CUX1-206ENST00000437600 ATOX1O00244 68 aa6.39□□□□□ -1.39
CUX1-206ENST00000437600 LINC01561Q8N1V8 128 aa6.39□□□□□ -1.39
CUX1-206ENST00000437600 IGKV3D-7A0A0C4DH55 119 aa6.38□□□□□ -1.39
CUX1-206ENST00000437600 SPAG11BQ08648 103 aa6.38□□□□□ -1.39
CUX1-206ENST00000437600 C11orf45Q8TAV5 145 aa6.37□□□□□ -1.39
CUX1-206ENST00000437600 LELP1Q5T871 98 aa6.37□□□□□ -1.39
CUX1-206ENST00000437600 A0A087WVE0 104 aa6.36□□□□□ -1.39
CUX1-206ENST00000437600 DEFB131BA0A096LNP1 70 aa6.36□□□□□ -1.39
CUX1-206ENST00000437600 INAFM2P0DMQ5 153 aa6.36□□□□□ -1.39
CUX1-206ENST00000437600 RPL18AQ02543 176 aaKnown RBP6.36□□□□□ -1.39
CUX1-206ENST00000437600 C6orf99Q4VX62 202 aa6.36□□□□□ -1.39
CUX1-206ENST00000437600 ESRGQ1W209 222 aa6.36□□□□□ -1.39
CUX1-206ENST00000437600 PLECQ15149 4684 aaKnown RBP6.36□□□□□ -1.39
CUX1-206ENST00000437600 STARD9Q9P2P6 4700 aa6.35□□□□□ -1.39
CUX1-206ENST00000437600 HIST1H4AP62805 103 aaKnown RBP6.35□□□□□ -1.39
CUX1-206ENST00000437600 S100A7L2Q5SY68 101 aa6.35□□□□□ -1.39
CUX1-206ENST00000437600 BRK1Q8WUW1 75 aa6.35□□□□□ -1.39
CUX1-206ENST00000437600 SERP2Q8N6R1 65 aa6.33□□□□□ -1.4
CUX1-206ENST00000437600 C6orf48Q9UBA6 75 aa6.33□□□□□ -1.4
CUX1-206ENST00000437600 H0YGX0 51 aa6.32□□□□□ -1.4
CUX1-206ENST00000437600 TM2D3Q9BRN9 247 aa6.32□□□□□ -1.4
CUX1-206ENST00000437600 PRR34Q9NV39 138 aa6.32□□□□□ -1.4
CUX1-206ENST00000437600 USP17L23D6RBM5 183 aa6.31□□□□□ -1.4
CUX1-206ENST00000437600 LINC00846Q9NV44 126 aa6.31□□□□□ -1.4
CUX1-206ENST00000437600 IGKV2D-24A0A075B6R9 120 aa6.31□□□□□ -1.4
CUX1-206ENST00000437600 PMAIP1Q13794 54 aa6.31□□□□□ -1.4
CUX1-206ENST00000437600 Q8N814 137 aa6.31□□□□□ -1.4
CUX1-206ENST00000437600 UPK3BQ9BT76 320 aa6.31□□□□□ -1.4
CUX1-206ENST00000437600 CAMK2N2Q96S95 79 aa6.3□□□□□ -1.4
CUX1-206ENST00000437600 TRBV10-3A0A0K0K1G6 114 aa6.3□□□□□ -1.4
CUX1-206ENST00000437600 ORMDL1Q9P0S3 153 aa6.3□□□□□ -1.4
CUX1-206ENST00000437600 Q6JHZ5 121 aa6.29□□□□□ -1.4
CUX1-206ENST00000437600 Q6ZRU5 148 aa6.29□□□□□ -1.4
CUX1-206ENST00000437600 NDUFC2O95298 119 aa6.29□□□□□ -1.4
CUX1-206ENST00000437600 CD164Q04900 197 aa6.29□□□□□ -1.4
CUX1-206ENST00000437600 COX17Q14061 63 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms