RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 UPK3BQ9BT76 320 aa14.07□□□□□ -0.16
PTPRF-207ENST00000436724 DNAH1Q9P2D7 4330 aa14.05□□□□□ -0.16
PTPRF-207ENST00000436724 DNAH7Q8WXX0 4024 aa14.05□□□□□ -0.16
PTPRF-207ENST00000436724 PLECQ15149 4684 aaKnown RBP14.05□□□□□ -0.16
PTPRF-207ENST00000436724 C15orf56Q8N910 161 aa14.04□□□□□ -0.16
PTPRF-207ENST00000436724 SND1-IT1Q9HBX3 110 aa14.02□□□□□ -0.16
PTPRF-207ENST00000436724 FBN3Q75N90 2809 aa14.02□□□□□ -0.17
PTPRF-207ENST00000436724 STARD9Q9P2P6 4700 aa14.01□□□□□ -0.17
PTPRF-207ENST00000436724 ZNF561-AS1K7EIQ3 104 aa14□□□□□ -0.17
PTPRF-207ENST00000436724 IGKV2-28A0A075B6P5 120 aa13.99□□□□□ -0.17
PTPRF-207ENST00000436724 IGKV2D-28P01615 120 aa13.99□□□□□ -0.17
PTPRF-207ENST00000436724 CASC10Q5T4H9 136 aa13.99□□□□□ -0.17
PTPRF-207ENST00000436724 UBE2DNLQ8IWF7 75 aa13.99□□□□□ -0.17
PTPRF-207ENST00000436724 COX17Q14061 63 aa13.99□□□□□ -0.17
PTPRF-207ENST00000436724 KRTAP1-5Q9BYS1 174 aa13.99□□□□□ -0.17
PTPRF-207ENST00000436724 NUPR2A6NF83 97 aa13.98□□□□□ -0.17
PTPRF-207ENST00000436724 LINC00337Q8N6G1 96 aa13.98□□□□□ -0.17
PTPRF-207ENST00000436724 C6orf48Q9UBA6 75 aa13.98□□□□□ -0.17
PTPRF-207ENST00000436724 TRAV13-2A0A0B4J235 113 aa13.98□□□□□ -0.17
PTPRF-207ENST00000436724 A0A1B0GV72 72 aa13.98□□□□□ -0.17
PTPRF-207ENST00000436724 FAM218AQ96MZ4 157 aa13.97□□□□□ -0.17
PTPRF-207ENST00000436724 CAMK2N2Q96S95 79 aa13.96□□□□□ -0.17
PTPRF-207ENST00000436724 RPL28P46779 137 aaKnown RBP13.96□□□□□ -0.18
PTPRF-207ENST00000436724 TRACP01848 142 aa13.95□□□□□ -0.18
PTPRF-207ENST00000436724 Q6ZRU5 148 aa13.94□□□□□ -0.18
PTPRF-207ENST00000436724 DNAH10Q8IVF4 4471 aa13.94□□□□□ -0.18
PTPRF-207ENST00000436724 GVQW2A0A096LPI5 108 aaPredicted RBP13.92□□□□□ -0.18
PTPRF-207ENST00000436724 PRR3P79522 188 aaKnown RBP13.92□□□□□ -0.18
PTPRF-207ENST00000436724 TGP01266 2768 aa13.92□□□□□ -0.18
PTPRF-207ENST00000436724 C22orf24Q9Y442 160 aa13.92□□□□□ -0.18
PTPRF-207ENST00000436724 Q8NDZ9 215 aa13.91□□□□□ -0.18
PTPRF-207ENST00000436724 LECT2O14960 151 aa13.9□□□□□ -0.18
PTPRF-207ENST00000436724 SNCGO76070 127 aa13.9□□□□□ -0.18
PTPRF-207ENST00000436724 BAALC-AS2P0C853 105 aa13.9□□□□□ -0.18
PTPRF-207ENST00000436724 SMIM11BQ8TCY0 68 aa13.9□□□□□ -0.18
PTPRF-207ENST00000436724 FAM240AA0A1B0GVK7 77 aa13.89□□□□□ -0.19
PTPRF-207ENST00000436724 USP17L23D6RBM5 183 aa13.89□□□□□ -0.19
PTPRF-207ENST00000436724 RMI2Q96E14 147 aa13.89□□□□□ -0.19
PTPRF-207ENST00000436724 C2orf48Q96LS8 159 aa13.89□□□□□ -0.19
PTPRF-207ENST00000436724 XAGE1AQ9HD64 81 aa13.88□□□□□ -0.19
PTPRF-207ENST00000436724 GAGE2BQ13066 116 aa13.87□□□□□ -0.19
PTPRF-207ENST00000436724 GAGE2EQ4V326 116 aa13.87□□□□□ -0.19
PTPRF-207ENST00000436724 GAGE2DQ9UEU5 116 aa13.87□□□□□ -0.19
PTPRF-207ENST00000436724 SLPIP03973 132 aa13.85□□□□□ -0.19
PTPRF-207ENST00000436724 OR13C6PQ8NH95 151 aa13.85□□□□□ -0.19
PTPRF-207ENST00000436724 SYCNQ0VAF6 134 aa13.85□□□□□ -0.19
PTPRF-207ENST00000436724 TTC32Q5I0X7 151 aa13.83□□□□□ -0.19
PTPRF-207ENST00000436724 Q6Q795 121 aa13.83□□□□□ -0.19
PTPRF-207ENST00000436724 A0A087WYN8 130 aa13.82□□□□□ -0.2
PTPRF-207ENST00000436724 NCR3O14931 201 aa13.82□□□□□ -0.2
PTPRF-207ENST00000436724 NDUFC2O95298 119 aa13.82□□□□□ -0.2
PTPRF-207ENST00000436724 MUC7Q8TAX7 377 aa13.82□□□□□ -0.2
PTPRF-207ENST00000436724 NDUFC2-KCTD14E9PQ53 114 aa13.81□□□□□ -0.2
PTPRF-207ENST00000436724 H0YGX0 51 aa13.81□□□□□ -0.2
PTPRF-207ENST00000436724 Q6ZRP5 223 aa13.8□□□□□ -0.2
PTPRF-207ENST00000436724 VPS13DQ5THJ4 4388 aa13.8□□□□□ -0.2
PTPRF-207ENST00000436724 ACYP1P07311 99 aa13.79□□□□□ -0.2
PTPRF-207ENST00000436724 ANAPC13Q9BS18 74 aa13.79□□□□□ -0.2
PTPRF-207ENST00000436724 NBDYA0A0U1RRE5 68 aa13.78□□□□□ -0.2
PTPRF-207ENST00000436724 F8WDY8 70 aa13.78□□□□□ -0.2
PTPRF-207ENST00000436724 PSCAO43653 123 aa13.78□□□□□ -0.2
PTPRF-207ENST00000436724 NDUFV3P56181 108 aaKnown RBP13.76□□□□□ -0.21
PTPRF-207ENST00000436724 RPL18AQ02543 176 aaKnown RBP13.75□□□□□ -0.21
PTPRF-207ENST00000436724 M0R2N4 97 aa13.74□□□□□ -0.21
PTPRF-207ENST00000436724 DNAL4O96015 105 aa13.74□□□□□ -0.21
PTPRF-207ENST00000436724 SMCR5Q8TEV8 140 aa13.73□□□□□ -0.21
PTPRF-207ENST00000436724 C9orf129Q5T035 196 aaKnown RBP13.73□□□□□ -0.21
PTPRF-207ENST00000436724 TMEM126AQ9H061 195 aa13.73□□□□□ -0.21
PTPRF-207ENST00000436724 INAFM2P0DMQ5 153 aa13.72□□□□□ -0.21
PTPRF-207ENST00000436724 S100A7L2Q5SY68 101 aa13.72□□□□□ -0.21
PTPRF-207ENST00000436724 SDIM1Q6ZPB5 146 aa13.72□□□□□ -0.21
PTPRF-207ENST00000436724 KMT2AQ03164 3969 aa13.71□□□□□ -0.21
PTPRF-207ENST00000436724 TRBV7-7A0A0K0K1E9 115 aa13.71□□□□□ -0.21
PTPRF-207ENST00000436724 VPREB1P12018 145 aa13.69□□□□□ -0.22
PTPRF-207ENST00000436724 OBSCN-AS1Q96MR7 158 aa13.69□□□□□ -0.22
PTPRF-207ENST00000436724 TLX1NBP0CAT3 122 aa13.67□□□□□ -0.22
PTPRF-207ENST00000436724 IGLV6-57P01721 117 aa13.66□□□□□ -0.22
PTPRF-207ENST00000436724 GAGE2AQ6NT46 116 aa13.66□□□□□ -0.22
PTPRF-207ENST00000436724 Q6ZRN7 208 aaPredicted RBP13.66□□□□□ -0.22
PTPRF-207ENST00000436724 LINC00643Q86TS7 51 aa13.66□□□□□ -0.22
PTPRF-207ENST00000436724 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.66□□□□□ -0.22
PTPRF-207ENST00000436724 TRBV10-3A0A0K0K1G6 114 aa13.66□□□□□ -0.22
PTPRF-207ENST00000436724 C6orf99Q4VX62 202 aa13.64□□□□□ -0.23
PTPRF-207ENST00000436724 C14orf132Q9NPU4 83 aa13.64□□□□□ -0.23
PTPRF-207ENST00000436724 SERTAD4-AS1Q5TG53 156 aa13.64□□□□□ -0.23
PTPRF-207ENST00000436724 LINC00167Q96N53 147 aa13.64□□□□□ -0.23
PTPRF-207ENST00000436724 LRCOL1A6NCL2 159 aa13.63□□□□□ -0.23
PTPRF-207ENST00000436724 WWC2-AS2Q96NR7 200 aa13.62□□□□□ -0.23
PTPRF-207ENST00000436724 IMUPQ9GZP8 106 aa13.62□□□□□ -0.23
PTPRF-207ENST00000436724 FAM168BA1KXE4 195 aa13.62□□□□□ -0.23
PTPRF-207ENST00000436724 ORMDL1Q9P0S3 153 aa13.62□□□□□ -0.23
PTPRF-207ENST00000436724 CNBPP62633 177 aaKnown RBP13.6□□□□□ -0.23
PTPRF-207ENST00000436724 Q8N814 137 aa13.6□□□□□ -0.23
PTPRF-207ENST00000436724 DNAH2Q9P225 4427 aa13.6□□□□□ -0.23
PTPRF-207ENST00000436724 A0A1B0GX51 115 aa13.59□□□□□ -0.23
PTPRF-207ENST00000436724 CCDC179H3BU77 68 aa13.59□□□□□ -0.23
PTPRF-207ENST00000436724 M0R378 163 aa13.59□□□□□ -0.23
PTPRF-207ENST00000436724 LOC107984640A0A0U1RRK4 108 aa13.59□□□□□ -0.23
PTPRF-207ENST00000436724 LY6G6CO95867 125 aa13.58□□□□□ -0.24
PTPRF-207ENST00000436724 TRAV23DV6A0A075B6W5 121 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms