RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 CASC10Q5T4H9 136 aa3.95□□□□□ -1.78
HMGB3-202ENST00000419110 LINC00308Q8TCZ7 52 aa3.95□□□□□ -1.78
HMGB3-202ENST00000419110 LINC00526Q96FQ7 95 aa3.95□□□□□ -1.78
HMGB3-202ENST00000419110 A0A1B0GWB2 263 aa3.94□□□□□ -1.78
HMGB3-202ENST00000419110 LY6G6CO95867 125 aa3.94□□□□□ -1.78
HMGB3-202ENST00000419110 ADAMTSL4-AS1Q5T5F5 129 aa3.94□□□□□ -1.78
HMGB3-202ENST00000419110 Q6ZRU5 148 aa3.94□□□□□ -1.78
HMGB3-202ENST00000419110 MUSTN1Q8IVN3 82 aa3.94□□□□□ -1.78
HMGB3-202ENST00000419110 C6orf223Q8N319 242 aa3.94□□□□□ -1.78
HMGB3-202ENST00000419110 C6orf48Q9UBA6 75 aa3.94□□□□□ -1.78
HMGB3-202ENST00000419110 LYSTQ99698 3801 aa3.94□□□□□ -1.78
HMGB3-202ENST00000419110 NDUFC2-KCTD14E9PQ53 114 aa3.93□□□□□ -1.78
HMGB3-202ENST00000419110 TAX1BP3O14907 124 aa3.93□□□□□ -1.78
HMGB3-202ENST00000419110 LECT2O14960 151 aa3.93□□□□□ -1.78
HMGB3-202ENST00000419110 RPL13AP40429 203 aaKnown RBP3.93□□□□□ -1.78
HMGB3-202ENST00000419110 RPL18AQ02543 176 aaKnown RBP3.93□□□□□ -1.78
HMGB3-202ENST00000419110 C10orf25Q5T742 122 aa3.93□□□□□ -1.78
HMGB3-202ENST00000419110 UNQ6190/PRO20217Q6UXQ8 127 aa3.93□□□□□ -1.78
HMGB3-202ENST00000419110 SOSTDC1Q6X4U4 206 aa3.93□□□□□ -1.78
HMGB3-202ENST00000419110 SND1-IT1Q9HBX3 110 aa3.93□□□□□ -1.78
HMGB3-202ENST00000419110 TRAV13-2A0A0B4J235 113 aa3.92□□□□□ -1.78
HMGB3-202ENST00000419110 C9orf118A6NHY6 69 aa3.92□□□□□ -1.78
HMGB3-202ENST00000419110 M0R2N4 97 aa3.92□□□□□ -1.78
HMGB3-202ENST00000419110 RNF151Q2KHN1 245 aa3.92□□□□□ -1.78
HMGB3-202ENST00000419110 C9orf116Q5BN46 136 aaPredicted RBP3.92□□□□□ -1.78
HMGB3-202ENST00000419110 Q6ZR54 194 aa3.92□□□□□ -1.78
HMGB3-202ENST00000419110 PRO1854Q9UHT4 67 aa3.92□□□□□ -1.78
HMGB3-202ENST00000419110 LOC107984640A0A0U1RRK4 108 aa3.91□□□□□ -1.78
HMGB3-202ENST00000419110 A0A1B0GV90 55 aa3.91□□□□□ -1.78
HMGB3-202ENST00000419110 H3BUT2 72 aa3.91□□□□□ -1.78
HMGB3-202ENST00000419110 H7C2G1 150 aa3.91□□□□□ -1.78
HMGB3-202ENST00000419110 NDUFC2O95298 119 aa3.91□□□□□ -1.78
HMGB3-202ENST00000419110 TSPAN13O95857 204 aa3.91□□□□□ -1.78
HMGB3-202ENST00000419110 CFC1BP0CG36 223 aa3.91□□□□□ -1.78
HMGB3-202ENST00000419110 CFC1P0CG37 223 aa3.91□□□□□ -1.78
HMGB3-202ENST00000419110 FABP2P12104 132 aa3.91□□□□□ -1.78
HMGB3-202ENST00000419110 CNBPP62633 177 aaKnown RBP3.91□□□□□ -1.78
HMGB3-202ENST00000419110 C1orf134Q5TEV5 83 aa3.91□□□□□ -1.78
HMGB3-202ENST00000419110 Q6ZRN7 208 aaPredicted RBP3.91□□□□□ -1.78
HMGB3-202ENST00000419110 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.9□□□□□ -1.79
HMGB3-202ENST00000419110 LOC107984156A0A0G2JMH3 177 aa3.9□□□□□ -1.79
HMGB3-202ENST00000419110 A0A1W2PPM0 123 aa3.9□□□□□ -1.79
HMGB3-202ENST00000419110 NCR3O14931 201 aa3.9□□□□□ -1.79
HMGB3-202ENST00000419110 TLX1NBP0CAT3 122 aa3.9□□□□□ -1.79
HMGB3-202ENST00000419110 PSMB2P49721 201 aa3.9□□□□□ -1.79
HMGB3-202ENST00000419110 WFDC2Q14508 124 aa3.9□□□□□ -1.79
HMGB3-202ENST00000419110 VAMP3Q15836 100 aa3.9□□□□□ -1.79
HMGB3-202ENST00000419110 ARL17AQ8IVW1 177 aa3.9□□□□□ -1.79
HMGB3-202ENST00000419110 TRBV10-2A0A0K0K1G8 114 aa3.89□□□□□ -1.79
HMGB3-202ENST00000419110 COX6CP09669 75 aa3.89□□□□□ -1.79
HMGB3-202ENST00000419110 GAGE2EQ4V326 116 aa3.89□□□□□ -1.79
HMGB3-202ENST00000419110 S100A7L2Q5SY68 101 aa3.89□□□□□ -1.79
HMGB3-202ENST00000419110 GTF2H5Q6ZYL4 71 aa3.89□□□□□ -1.79
HMGB3-202ENST00000419110 NKAPP1Q8N9T2 125 aa3.89□□□□□ -1.79
HMGB3-202ENST00000419110 OR13C6PQ8NH95 151 aa3.89□□□□□ -1.79
HMGB3-202ENST00000419110 NAA38Q9BRA0 125 aaKnown RBP3.89□□□□□ -1.79
HMGB3-202ENST00000419110 XAGE1AQ9HD64 81 aa3.89□□□□□ -1.79
HMGB3-202ENST00000419110 GAGE2DQ9UEU5 116 aa3.89□□□□□ -1.79
HMGB3-202ENST00000419110 CBY1Q9Y3M2 126 aa3.89□□□□□ -1.79
HMGB3-202ENST00000419110 SPCS1Q9Y6A9 102 aa3.89□□□□□ -1.79
HMGB3-202ENST00000419110 A0A087WTM6 91 aa3.88□□□□□ -1.79
HMGB3-202ENST00000419110 K7EP34 96 aa3.88□□□□□ -1.79
HMGB3-202ENST00000419110 LINC00337Q8N6G1 96 aa3.88□□□□□ -1.79
HMGB3-202ENST00000419110 Q8N814 137 aa3.88□□□□□ -1.79
HMGB3-202ENST00000419110 DNAH10Q8IVF4 4471 aa3.88□□□□□ -1.79
HMGB3-202ENST00000419110 IGKV2-28A0A075B6P5 120 aa3.87□□□□□ -1.79
HMGB3-202ENST00000419110 LRCOL1A6NCL2 159 aa3.87□□□□□ -1.79
HMGB3-202ENST00000419110 TRIAP1O43715 76 aa3.87□□□□□ -1.79
HMGB3-202ENST00000419110 IGKV2D-28P01615 120 aa3.87□□□□□ -1.79
HMGB3-202ENST00000419110 SCGB1C2P0DMR2 95 aa3.87□□□□□ -1.79
HMGB3-202ENST00000419110 GAGE2BQ13066 116 aa3.87□□□□□ -1.79
HMGB3-202ENST00000419110 Q6ZRP5 223 aa3.87□□□□□ -1.79
HMGB3-202ENST00000419110 TRBV20-1A0A075B6N2 111 aa3.86□□□□□ -1.79
HMGB3-202ENST00000419110 IGKV2-24A0A0C4DH68 120 aa3.86□□□□□ -1.79
HMGB3-202ENST00000419110 LCE6AA0A183 80 aa3.86□□□□□ -1.79
HMGB3-202ENST00000419110 GAGE10A6NGK3 116 aa3.86□□□□□ -1.79
HMGB3-202ENST00000419110 C16orf90A8MZG2 172 aa3.86□□□□□ -1.79
HMGB3-202ENST00000419110 RTL8CO15255 209 aa3.86□□□□□ -1.79
HMGB3-202ENST00000419110 VPREB1P12018 145 aa3.86□□□□□ -1.79
HMGB3-202ENST00000419110 TMEM126AQ9H061 195 aa3.86□□□□□ -1.79
HMGB3-202ENST00000419110 LINC00474Q9P2X8 69 aa3.86□□□□□ -1.79
HMGB3-202ENST00000419110 PLA2G2DQ9UNK4 145 aa3.86□□□□□ -1.79
HMGB3-202ENST00000419110 IGLV5-37A0A075B6J1 123 aa3.85□□□□□ -1.79
HMGB3-202ENST00000419110 TRAV23DV6A0A075B6W5 121 aa3.85□□□□□ -1.79
HMGB3-202ENST00000419110 A0A096LNI7 61 aa3.85□□□□□ -1.79
HMGB3-202ENST00000419110 IGLV5-52A0A0A0MRZ9 124 aa3.85□□□□□ -1.79
HMGB3-202ENST00000419110 M0R378 163 aa3.85□□□□□ -1.79
HMGB3-202ENST00000419110 SLPIP03973 132 aa3.85□□□□□ -1.79
HMGB3-202ENST00000419110 KRTAP10-2P60368 255 aa3.85□□□□□ -1.79
HMGB3-202ENST00000419110 ATXN8Q156A1 80 aa3.85□□□□□ -1.79
HMGB3-202ENST00000419110 C9orf129Q5T035 196 aaKnown RBP3.85□□□□□ -1.79
HMGB3-202ENST00000419110 FAM19A5Q7Z5A7 132 aaPredicted RBP3.85□□□□□ -1.79
HMGB3-202ENST00000419110 C9orf163Q8N9P6 203 aa3.85□□□□□ -1.79
HMGB3-202ENST00000419110 DIRC1Q969H9 104 aa3.85□□□□□ -1.79
HMGB3-202ENST00000419110 DNAH17Q9UFH2 4485 aa3.84□□□□□ -1.79
HMGB3-202ENST00000419110 TRBV10-3A0A0K0K1G6 114 aa3.84□□□□□ -1.79
HMGB3-202ENST00000419110 M0QXV9 152 aa3.84□□□□□ -1.79
HMGB3-202ENST00000419110 PRYO14603 147 aa3.84□□□□□ -1.79
HMGB3-202ENST00000419110 DNAL4O96015 105 aa3.84□□□□□ -1.79
HMGB3-202ENST00000419110 RPL28P46779 137 aaKnown RBP3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms