RNA–Protein interactions for RNA: ENST00000417137.5

SMARCB1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 3

Gene SMARCB1, Length 889 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-205ENST00000417137 UBE2BP63146 152 aa14.34□□□□□ -0.11
SMARCB1-205ENST00000417137 TP73-AS1Q9UF72 201 aa14.34□□□□□ -0.11
SMARCB1-205ENST00000417137 SRRM2Q9UQ35 2752 aaKnown RBP14.34□□□□□ -0.11
SMARCB1-205ENST00000417137 HIST1H2BLQ99880 126 aa14.33□□□□□ -0.12
SMARCB1-205ENST00000417137 A0A0U1RRA0 63 aa14.32□□□□□ -0.12
SMARCB1-205ENST00000417137 SMIM13P0DJ93 91 aa14.32□□□□□ -0.12
SMARCB1-205ENST00000417137 PSORS1C2Q9UIG4 136 aa14.31□□□□□ -0.12
SMARCB1-205ENST00000417137 SNRPEP62304 92 aaKnown RBP14.3□□□□□ -0.12
SMARCB1-205ENST00000417137 RPL24P83731 157 aaKnown RBP14.3□□□□□ -0.12
SMARCB1-205ENST00000417137 MRPL55Q7Z7F7 128 aaKnown RBP14.3□□□□□ -0.12
SMARCB1-205ENST00000417137 NKAPP1Q8N9T2 125 aa14.3□□□□□ -0.12
SMARCB1-205ENST00000417137 IGLV5-37A0A075B6J1 123 aa14.29□□□□□ -0.12
SMARCB1-205ENST00000417137 HNRNPA3P51991 378 aaKnown RBP14.27□□□□□ -0.13
SMARCB1-205ENST00000417137 C1orf137Q5JT78 98 aa14.27□□□□□ -0.13
SMARCB1-205ENST00000417137 MIR7-3HGQ8N6C7 128 aa14.26□□□□□ -0.13
SMARCB1-205ENST00000417137 C5orf52A6NGY3 159 aa14.25□□□□□ -0.13
SMARCB1-205ENST00000417137 LINC00167Q96N53 147 aa14.24□□□□□ -0.13
SMARCB1-205ENST00000417137 VPREB1P12018 145 aa14.23□□□□□ -0.13
SMARCB1-205ENST00000417137 SPINK6Q6UWN8 80 aa14.23□□□□□ -0.13
SMARCB1-205ENST00000417137 KRTAP11-1Q8IUC1 163 aa14.23□□□□□ -0.13
SMARCB1-205ENST00000417137 ATOH7Q8N100 152 aa14.21□□□□□ -0.13
SMARCB1-205ENST00000417137 A0A0J9YXY3 114 aa14.2□□□□□ -0.14
SMARCB1-205ENST00000417137 GAGE10A6NGK3 116 aa14.2□□□□□ -0.14
SMARCB1-205ENST00000417137 SRSF9Q13242 221 aaKnown RBP eCLIP14.2□□□□□ -0.14
SMARCB1-205ENST00000417137 BOD1L2Q8IYS8 172 aa14.2□□□□□ -0.14
SMARCB1-205ENST00000417137 IGKV2D-26A0A0A0MRZ7 120 aa14.19□□□□□ -0.14
SMARCB1-205ENST00000417137 RPL37AP8A6NKH3 93 aa14.19□□□□□ -0.14
SMARCB1-205ENST00000417137 ZNF815PA8K554 130 aa14.19□□□□□ -0.14
SMARCB1-205ENST00000417137 IGLV7-43P04211 117 aa14.19□□□□□ -0.14
SMARCB1-205ENST00000417137 OXTP01178 125 aa14.18□□□□□ -0.14
SMARCB1-205ENST00000417137 FLG2Q5D862 2391 aaPredicted RBP14.18□□□□□ -0.14
SMARCB1-205ENST00000417137 KRTAP29-1A8MX34 341 aaPredicted RBP14.17□□□□□ -0.14
SMARCB1-205ENST00000417137 MIEN1Q9BRT3 115 aa14.17□□□□□ -0.14
SMARCB1-205ENST00000417137 LOC107984156A0A0G2JMH3 177 aa14.16□□□□□ -0.14
SMARCB1-205ENST00000417137 ARL17AQ8IVW1 177 aa14.16□□□□□ -0.14
SMARCB1-205ENST00000417137 DAND5Q8N907 189 aa14.16□□□□□ -0.14
SMARCB1-205ENST00000417137 HSBP1L1C9JCN9 74 aa14.15□□□□□ -0.14
SMARCB1-205ENST00000417137 M0R378 163 aa14.15□□□□□ -0.14
SMARCB1-205ENST00000417137 ANKRD39Q53RE8 183 aa14.15□□□□□ -0.14
SMARCB1-205ENST00000417137 MYCBP2O75592 4640 aa14.14□□□□□ -0.15
SMARCB1-205ENST00000417137 TIMM17BO60830 172 aa14.14□□□□□ -0.15
SMARCB1-205ENST00000417137 SCGB1D1O95968 90 aa14.14□□□□□ -0.15
SMARCB1-205ENST00000417137 Q8NDZ9 215 aa14.14□□□□□ -0.15
SMARCB1-205ENST00000417137 IGLV1-50A0A075B6I6 118 aa14.13□□□□□ -0.15
SMARCB1-205ENST00000417137 J3QL48 77 aa14.13□□□□□ -0.15
SMARCB1-205ENST00000417137 REG3GQ6UW15 175 aa14.13□□□□□ -0.15
SMARCB1-205ENST00000417137 IGKV2-28A0A075B6P5 120 aa14.12□□□□□ -0.15
SMARCB1-205ENST00000417137 IGKV2D-28P01615 120 aa14.12□□□□□ -0.15
SMARCB1-205ENST00000417137 DIRC1Q969H9 104 aa14.12□□□□□ -0.15
SMARCB1-205ENST00000417137 TTTY13Q9BZ97 58 aa14.12□□□□□ -0.15
SMARCB1-205ENST00000417137 BCE1O60756 84 aa14.11□□□□□ -0.15
SMARCB1-205ENST00000417137 ADAMTSL4-AS1Q5T5F5 129 aa14.11□□□□□ -0.15
SMARCB1-205ENST00000417137 SCGB1D4Q6XE38 83 aa14.1□□□□□ -0.15
SMARCB1-205ENST00000417137 ZNF861PO60384 105 aa14.08□□□□□ -0.16
SMARCB1-205ENST00000417137 NCR3O14931 201 aa14.07□□□□□ -0.16
SMARCB1-205ENST00000417137 NDUFC2O95298 119 aa14.07□□□□□ -0.16
SMARCB1-205ENST00000417137 RPL28P46779 137 aaKnown RBP14.07□□□□□ -0.16
SMARCB1-205ENST00000417137 LITAFQ99732 161 aa14.07□□□□□ -0.16
SMARCB1-205ENST00000417137 TRBV10-2A0A0K0K1G8 114 aa14.05□□□□□ -0.16
SMARCB1-205ENST00000417137 TMEM238C9JI98 176 aa14.05□□□□□ -0.16
SMARCB1-205ENST00000417137 NPC2P61916 151 aa14.05□□□□□ -0.16
SMARCB1-205ENST00000417137 PCP2Q8IVA1 136 aa14.05□□□□□ -0.16
SMARCB1-205ENST00000417137 SPANXB1Q9NS25 103 aaPredicted RBP14.05□□□□□ -0.16
SMARCB1-205ENST00000417137 PKHD1L1Q86WI1 4243 aa14.04□□□□□ -0.16
SMARCB1-205ENST00000417137 H0Y9J4 135 aa14.04□□□□□ -0.16
SMARCB1-205ENST00000417137 UBE2AP49459 152 aa14.04□□□□□ -0.16
SMARCB1-205ENST00000417137 S100A12P80511 92 aa14.04□□□□□ -0.16
SMARCB1-205ENST00000417137 LINC00308Q8TCZ7 52 aa14.04□□□□□ -0.16
SMARCB1-205ENST00000417137 TMEM126AQ9H061 195 aa14.04□□□□□ -0.16
SMARCB1-205ENST00000417137 SOSTDC1Q6X4U4 206 aa14.03□□□□□ -0.16
SMARCB1-205ENST00000417137 COPS9Q8WXC6 57 aa14.03□□□□□ -0.16
SMARCB1-205ENST00000417137 LINC01600Q96MT4 127 aa14.01□□□□□ -0.17
SMARCB1-205ENST00000417137 TMA7Q9Y2S6 64 aaKnown RBP14.01□□□□□ -0.17
SMARCB1-205ENST00000417137 Q6ZVH6 145 aa14□□□□□ -0.17
SMARCB1-205ENST00000417137 SPANXDQ9BXN6 97 aa14□□□□□ -0.17
SMARCB1-205ENST00000417137 SPANXCQ9NY87 97 aa14□□□□□ -0.17
SMARCB1-205ENST00000417137 TRBV10-3A0A0K0K1G6 114 aa13.99□□□□□ -0.17
SMARCB1-205ENST00000417137 PRYO14603 147 aa13.99□□□□□ -0.17
SMARCB1-205ENST00000417137 EIF4EBP3O60516 100 aaPredicted RBP13.99□□□□□ -0.17
SMARCB1-205ENST00000417137 S100A7L2Q5SY68 101 aa13.99□□□□□ -0.17
SMARCB1-205ENST00000417137 FAM19A1Q7Z5A9 133 aa13.99□□□□□ -0.17
SMARCB1-205ENST00000417137 KCNQ1DNQ9H478 68 aa13.99□□□□□ -0.17
SMARCB1-205ENST00000417137 IFITM1P13164 125 aa13.98□□□□□ -0.17
SMARCB1-205ENST00000417137 DDTP30046 118 aa13.98□□□□□ -0.17
SMARCB1-205ENST00000417137 JOSD1Q15040 202 aaPredicted RBP13.96□□□□□ -0.17
SMARCB1-205ENST00000417137 KRTAP13-1Q8IUC0 172 aa13.95□□□□□ -0.18
SMARCB1-205ENST00000417137 CBY1Q9Y3M2 126 aa13.95□□□□□ -0.18
SMARCB1-205ENST00000417137 LINC00518Q8N0U6 118 aa13.94□□□□□ -0.18
SMARCB1-205ENST00000417137 PPDPFQ9H3Y8 114 aa13.94□□□□□ -0.18
SMARCB1-205ENST00000417137 IGLV6-57P01721 117 aa13.93□□□□□ -0.18
SMARCB1-205ENST00000417137 PRLHP81277 87 aa13.92□□□□□ -0.18
SMARCB1-205ENST00000417137 LINC00337Q8N6G1 96 aa13.92□□□□□ -0.18
SMARCB1-205ENST00000417137 ETDCA0A1B0GVM5 59 aa13.91□□□□□ -0.18
SMARCB1-205ENST00000417137 MT1HL1P0DM35 61 aa13.91□□□□□ -0.18
SMARCB1-205ENST00000417137 SPRR1AP35321 89 aa13.91□□□□□ -0.18
SMARCB1-205ENST00000417137 LRP1Q07954 4544 aaKnown RBP13.91□□□□□ -0.18
SMARCB1-205ENST00000417137 COX8AP10176 69 aa13.9□□□□□ -0.18
SMARCB1-205ENST00000417137 OR13C6PQ8NH95 151 aa13.9□□□□□ -0.18
SMARCB1-205ENST00000417137 VAMP8Q9BV40 100 aa13.9□□□□□ -0.18
SMARCB1-205ENST00000417137 MUSTN1Q8IVN3 82 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms