RNA–Protein interactions for RNA: ENST00000409326.6

PTCD3-202, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 522 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-202ENST00000409326 LINC00587B1AMM8 73 aa12.59□□□□□ -0.39
PTCD3-202ENST00000409326 SMIM13P0DJ93 91 aa12.59□□□□□ -0.39
PTCD3-202ENST00000409326 AKR1D1P51857 326 aa12.59□□□□□ -0.39
PTCD3-202ENST00000409326 C22orf24Q9Y442 160 aa12.59□□□□□ -0.39
PTCD3-202ENST00000409326 A0A0U1RRA0 63 aa12.58□□□□□ -0.4
PTCD3-202ENST00000409326 TP73-AS1Q9UF72 201 aa12.58□□□□□ -0.4
PTCD3-202ENST00000409326 HNRNPA3P51991 378 aaKnown RBP12.57□□□□□ -0.4
PTCD3-202ENST00000409326 PSORS1C2Q9UIG4 136 aa12.57□□□□□ -0.4
PTCD3-202ENST00000409326 MYCBP2O75592 4640 aa12.57□□□□□ -0.4
PTCD3-202ENST00000409326 IGLV5-37A0A075B6J1 123 aa12.56□□□□□ -0.4
PTCD3-202ENST00000409326 UBE2BP63146 152 aa12.56□□□□□ -0.4
PTCD3-202ENST00000409326 LBHQ53QV2 105 aaPredicted RBP12.55□□□□□ -0.4
PTCD3-202ENST00000409326 MRPL55Q7Z7F7 128 aaKnown RBP12.55□□□□□ -0.4
PTCD3-202ENST00000409326 KRTAP11-1Q8IUC1 163 aa12.55□□□□□ -0.4
PTCD3-202ENST00000409326 ATOH7Q8N100 152 aa12.54□□□□□ -0.4
PTCD3-202ENST00000409326 MIR7-3HGQ8N6C7 128 aa12.54□□□□□ -0.4
PTCD3-202ENST00000409326 IGKV2D-26A0A0A0MRZ7 120 aa12.53□□□□□ -0.4
PTCD3-202ENST00000409326 VPREB1P12018 145 aa12.53□□□□□ -0.4
PTCD3-202ENST00000409326 NKAPP1Q8N9T2 125 aa12.53□□□□□ -0.4
PTCD3-202ENST00000409326 RPL24P83731 157 aaKnown RBP12.52□□□□□ -0.41
PTCD3-202ENST00000409326 C1orf137Q5JT78 98 aa12.51□□□□□ -0.41
PTCD3-202ENST00000409326 A0A0J9YXY3 114 aa12.5□□□□□ -0.41
PTCD3-202ENST00000409326 ANKRD39Q53RE8 183 aa12.5□□□□□ -0.41
PTCD3-202ENST00000409326 Q8NDZ9 215 aa12.5□□□□□ -0.41
PTCD3-202ENST00000409326 LINC00167Q96N53 147 aa12.5□□□□□ -0.41
PTCD3-202ENST00000409326 ZNF815PA8K554 130 aa12.48□□□□□ -0.41
PTCD3-202ENST00000409326 DAND5Q8N907 189 aa12.48□□□□□ -0.41
PTCD3-202ENST00000409326 FAT3Q8TDW7 4589 aa12.47□□□□□ -0.41
PTCD3-202ENST00000409326 GAGE10A6NGK3 116 aa12.47□□□□□ -0.41
PTCD3-202ENST00000409326 TTTY13Q9BZ97 58 aa12.47□□□□□ -0.41
PTCD3-202ENST00000409326 LRP1Q07954 4544 aaKnown RBP12.46□□□□□ -0.41
PTCD3-202ENST00000409326 BOD1L2Q8IYS8 172 aa12.46□□□□□ -0.41
PTCD3-202ENST00000409326 LOC107984156A0A0G2JMH3 177 aa12.45□□□□□ -0.42
PTCD3-202ENST00000409326 RPL37AP8A6NKH3 93 aa12.45□□□□□ -0.42
PTCD3-202ENST00000409326 IGLV7-43P04211 117 aa12.45□□□□□ -0.42
PTCD3-202ENST00000409326 SRSF9Q13242 221 aaKnown RBP eCLIP12.45□□□□□ -0.42
PTCD3-202ENST00000409326 SPINK6Q6UWN8 80 aa12.45□□□□□ -0.42
PTCD3-202ENST00000409326 ARL17AQ8IVW1 177 aa12.45□□□□□ -0.42
PTCD3-202ENST00000409326 TIMM17BO60830 172 aa12.44□□□□□ -0.42
PTCD3-202ENST00000409326 ADAMTSL4-AS1Q5T5F5 129 aa12.43□□□□□ -0.42
PTCD3-202ENST00000409326 SCGB1D1O95968 90 aa12.42□□□□□ -0.42
PTCD3-202ENST00000409326 LITAFQ99732 161 aa12.42□□□□□ -0.42
PTCD3-202ENST00000409326 MIEN1Q9BRT3 115 aa12.42□□□□□ -0.42
PTCD3-202ENST00000409326 IGLV1-50A0A075B6I6 118 aa12.41□□□□□ -0.42
PTCD3-202ENST00000409326 IGKV2-28A0A075B6P5 120 aa12.41□□□□□ -0.42
PTCD3-202ENST00000409326 HSBP1L1C9JCN9 74 aa12.41□□□□□ -0.42
PTCD3-202ENST00000409326 IGKV2D-28P01615 120 aa12.41□□□□□ -0.42
PTCD3-202ENST00000409326 KRTAP29-1A8MX34 341 aaPredicted RBP12.4□□□□□ -0.42
PTCD3-202ENST00000409326 M0R378 163 aa12.4□□□□□ -0.42
PTCD3-202ENST00000409326 PCP2Q8IVA1 136 aa12.4□□□□□ -0.42
PTCD3-202ENST00000409326 OXTP01178 125 aa12.39□□□□□ -0.43
PTCD3-202ENST00000409326 TMA7Q9Y2S6 64 aaKnown RBP12.39□□□□□ -0.43
PTCD3-202ENST00000409326 NCR3O14931 201 aa12.38□□□□□ -0.43
PTCD3-202ENST00000409326 BCE1O60756 84 aa12.38□□□□□ -0.43
PTCD3-202ENST00000409326 SOSTDC1Q6X4U4 206 aa12.38□□□□□ -0.43
PTCD3-202ENST00000409326 SCGB1D4Q6XE38 83 aa12.38□□□□□ -0.43
PTCD3-202ENST00000409326 NPC2P61916 151 aa12.37□□□□□ -0.43
PTCD3-202ENST00000409326 EIF4EBP3O60516 100 aaPredicted RBP12.36□□□□□ -0.43
PTCD3-202ENST00000409326 NDUFC2O95298 119 aa12.36□□□□□ -0.43
PTCD3-202ENST00000409326 DMBT1Q9UGM3 2413 aaPredicted RBP12.35□□□□□ -0.43
PTCD3-202ENST00000409326 TMEM238C9JI98 176 aa12.35□□□□□ -0.43
PTCD3-202ENST00000409326 LINC00308Q8TCZ7 52 aa12.35□□□□□ -0.43
PTCD3-202ENST00000409326 DIRC1Q969H9 104 aa12.35□□□□□ -0.43
PTCD3-202ENST00000409326 TRBV10-2A0A0K0K1G8 114 aa12.34□□□□□ -0.43
PTCD3-202ENST00000409326 ZNF861PO60384 105 aa12.34□□□□□ -0.43
PTCD3-202ENST00000409326 SPANXB1Q9NS25 103 aaPredicted RBP12.34□□□□□ -0.43
PTCD3-202ENST00000409326 REG3GQ6UW15 175 aa12.33□□□□□ -0.44
PTCD3-202ENST00000409326 SPANXDQ9BXN6 97 aa12.33□□□□□ -0.44
PTCD3-202ENST00000409326 TMEM126AQ9H061 195 aa12.33□□□□□ -0.44
PTCD3-202ENST00000409326 SPANXCQ9NY87 97 aa12.33□□□□□ -0.44
PTCD3-202ENST00000409326 H0Y9J4 135 aa12.32□□□□□ -0.44
PTCD3-202ENST00000409326 J3QL48 77 aa12.32□□□□□ -0.44
PTCD3-202ENST00000409326 JOSD1Q15040 202 aaPredicted RBP12.32□□□□□ -0.44
PTCD3-202ENST00000409326 RPL28P46779 137 aaKnown RBP12.31□□□□□ -0.44
PTCD3-202ENST00000409326 TRBV10-3A0A0K0K1G6 114 aa12.3□□□□□ -0.44
PTCD3-202ENST00000409326 PRYO14603 147 aa12.29□□□□□ -0.44
PTCD3-202ENST00000409326 UBE2AP49459 152 aa12.29□□□□□ -0.44
PTCD3-202ENST00000409326 Q6ZVH6 145 aa12.29□□□□□ -0.44
PTCD3-202ENST00000409326 KRTAP13-1Q8IUC0 172 aa12.29□□□□□ -0.44
PTCD3-202ENST00000409326 KCNQ1DNQ9H478 68 aa12.29□□□□□ -0.44
PTCD3-202ENST00000409326 LINC01600Q96MT4 127 aa12.28□□□□□ -0.44
PTCD3-202ENST00000409326 DDTP30046 118 aa12.27□□□□□ -0.45
PTCD3-202ENST00000409326 FAM19A1Q7Z5A9 133 aa12.27□□□□□ -0.45
PTCD3-202ENST00000409326 COPS9Q8WXC6 57 aa12.27□□□□□ -0.45
PTCD3-202ENST00000409326 PPDPFQ9H3Y8 114 aa12.27□□□□□ -0.45
PTCD3-202ENST00000409326 TNXBP22105 4242 aa12.26□□□□□ -0.45
PTCD3-202ENST00000409326 IFITM1P13164 125 aa12.26□□□□□ -0.45
PTCD3-202ENST00000409326 IGLV6-57P01721 117 aa12.25□□□□□ -0.45
PTCD3-202ENST00000409326 COX8AP10176 69 aa12.25□□□□□ -0.45
PTCD3-202ENST00000409326 SPRR1AP35321 89 aa12.25□□□□□ -0.45
PTCD3-202ENST00000409326 S100A12P80511 92 aa12.25□□□□□ -0.45
PTCD3-202ENST00000409326 PRLHP81277 87 aa12.25□□□□□ -0.45
PTCD3-202ENST00000409326 S100A7L2Q5SY68 101 aa12.25□□□□□ -0.45
PTCD3-202ENST00000409326 VAMP8Q9BV40 100 aa12.24□□□□□ -0.45
PTCD3-202ENST00000409326 PAM16Q9Y3D7 125 aa12.24□□□□□ -0.45
PTCD3-202ENST00000409326 MT1HL1P0DM35 61 aa12.23□□□□□ -0.45
PTCD3-202ENST00000409326 SPATA45Q537H7 98 aa12.23□□□□□ -0.45
PTCD3-202ENST00000409326 LINC00337Q8N6G1 96 aa12.23□□□□□ -0.45
PTCD3-202ENST00000409326 PYY3Q5JQD4 70 aa12.22□□□□□ -0.45
PTCD3-202ENST00000409326 HERC1Q15751 4861 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 159.1 ms