RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 X6R8D5 127 aa4.16□□□□□ -1.74
SCN1A-203ENST00000409050 CPAMD8Q8IZJ3 1885 aa4.16□□□□□ -1.74
SCN1A-203ENST00000409050 DOPEY1Q5JWR5 2465 aa4.16□□□□□ -1.74
SCN1A-203ENST00000409050 CEP192Q8TEP8 1941 aa4.16□□□□□ -1.74
SCN1A-203ENST00000409050 SPINK1P00995 79 aa4.16□□□□□ -1.74
SCN1A-203ENST00000409050 CD164Q04900 197 aa4.16□□□□□ -1.74
SCN1A-203ENST00000409050 FAM218AQ96MZ4 157 aa4.16□□□□□ -1.74
SCN1A-203ENST00000409050 TLX1NBP0CAT3 122 aa4.16□□□□□ -1.74
SCN1A-203ENST00000409050 MED13LQ71F56 2210 aa4.15□□□□□ -1.74
SCN1A-203ENST00000409050 ZFHX2Q9C0A1 2572 aaPredicted RBP4.15□□□□□ -1.74
SCN1A-203ENST00000409050 PIEZO1Q92508 2521 aa4.15□□□□□ -1.75
SCN1A-203ENST00000409050 EPM2AB3EWF7 344 aa4.14□□□□□ -1.75
SCN1A-203ENST00000409050 LINC00528Q8N1L1 170 aa4.14□□□□□ -1.75
SCN1A-203ENST00000409050 PCDH15Q96QU1 1955 aa4.14□□□□□ -1.75
SCN1A-203ENST00000409050 NBDYA0A0U1RRE5 68 aa4.13□□□□□ -1.75
SCN1A-203ENST00000409050 BDP1A6H8Y1 2624 aa4.13□□□□□ -1.75
SCN1A-203ENST00000409050 CDSNQ15517 529 aa4.13□□□□□ -1.75
SCN1A-203ENST00000409050 COA5Q86WW8 74 aa4.13□□□□□ -1.75
SCN1A-203ENST00000409050 MDFIQ99750 246 aa4.13□□□□□ -1.75
SCN1A-203ENST00000409050 PRR15Q8IV56 129 aa4.13□□□□□ -1.75
SCN1A-203ENST00000409050 IGLV1-50A0A075B6I6 118 aa4.13□□□□□ -1.75
SCN1A-203ENST00000409050 TM2D3Q9BRN9 247 aa4.13□□□□□ -1.75
SCN1A-203ENST00000409050 A0A1W2PPR1 153 aa4.12□□□□□ -1.75
SCN1A-203ENST00000409050 C4orf26Q17RF5 130 aa4.12□□□□□ -1.75
SCN1A-203ENST00000409050 Q8NAQ8 132 aa4.12□□□□□ -1.75
SCN1A-203ENST00000409050 TYMSOSQ8TAI1 123 aa4.12□□□□□ -1.75
SCN1A-203ENST00000409050 WNK1Q9H4A3 2382 aa4.12□□□□□ -1.75
SCN1A-203ENST00000409050 PLA2G1BP04054 148 aaKnown RBP4.12□□□□□ -1.75
SCN1A-203ENST00000409050 PRR34Q9NV39 138 aa4.12□□□□□ -1.75
SCN1A-203ENST00000409050 DEFB116Q30KQ4 102 aa4.11□□□□□ -1.75
SCN1A-203ENST00000409050 ST20-AS1Q8NBB2 130 aa4.11□□□□□ -1.75
SCN1A-203ENST00000409050 RTL8CO15255 209 aa4.11□□□□□ -1.75
SCN1A-203ENST00000409050 LCA10Q71F78 164 aa4.11□□□□□ -1.75
SCN1A-203ENST00000409050 LINC00612Q8N6U2 182 aa4.11□□□□□ -1.75
SCN1A-203ENST00000409050 CRIPTQ9P021 101 aa4.11□□□□□ -1.75
SCN1A-203ENST00000409050 C8orf17Q9NRJ1 99 aa4.1□□□□□ -1.75
SCN1A-203ENST00000409050 SPACA4Q8TDM5 124 aa4.1□□□□□ -1.75
SCN1A-203ENST00000409050 PLXNB1O43157 2135 aa4.1□□□□□ -1.75
SCN1A-203ENST00000409050 PRRC2AP48634 2157 aaKnown RBP4.1□□□□□ -1.75
SCN1A-203ENST00000409050 CUL9Q8IWT3 2517 aa4.1□□□□□ -1.75
SCN1A-203ENST00000409050 A0A1B0GVX0 72 aa4.1□□□□□ -1.75
SCN1A-203ENST00000409050 KRTAP10-9P60411 292 aa4.1□□□□□ -1.75
SCN1A-203ENST00000409050 KTN1-AS1Q86SY8 53 aa4.1□□□□□ -1.75
SCN1A-203ENST00000409050 OTOGLQ3ZCN5 2332 aa4.09□□□□□ -1.75
SCN1A-203ENST00000409050 MIR22HGQ0VDD5 57 aa4.09□□□□□ -1.75
SCN1A-203ENST00000409050 SORL1Q92673 2214 aa4.09□□□□□ -1.75
SCN1A-203ENST00000409050 EXPH5Q8NEV8 1989 aa4.09□□□□□ -1.76
SCN1A-203ENST00000409050 IGLV5-37A0A075B6J1 123 aa4.08□□□□□ -1.76
SCN1A-203ENST00000409050 CCDC168Q8NDH2 2452 aa4.08□□□□□ -1.76
SCN1A-203ENST00000409050 SPINT4Q6UDR6 99 aa4.08□□□□□ -1.76
SCN1A-203ENST00000409050 C15orf56Q8N910 161 aa4.08□□□□□ -1.76
SCN1A-203ENST00000409050 CSPG4Q6UVK1 2322 aa4.08□□□□□ -1.76
SCN1A-203ENST00000409050 RAI1Q7Z5J4 1906 aaPredicted RBP4.08□□□□□ -1.76
SCN1A-203ENST00000409050 WIPF1O43516 503 aa4.08□□□□□ -1.76
SCN1A-203ENST00000409050 SMR3AQ99954 134 aa4.08□□□□□ -1.76
SCN1A-203ENST00000409050 LINC00588Q9Y4M8 146 aa4.07□□□□□ -1.76
SCN1A-203ENST00000409050 A8MUN3 132 aa4.07□□□□□ -1.76
SCN1A-203ENST00000409050 PHF5AQ7RTV0 110 aaKnown RBP4.07□□□□□ -1.76
SCN1A-203ENST00000409050 ARHGAP32A7KAX9 2087 aa4.07□□□□□ -1.76
SCN1A-203ENST00000409050 NAV2Q8IVL1 2488 aa4.07□□□□□ -1.76
SCN1A-203ENST00000409050 K7EQZ3 153 aa4.07□□□□□ -1.76
SCN1A-203ENST00000409050 H7BZZ5 65 aa4.06□□□□□ -1.76
SCN1A-203ENST00000409050 CDC42SE1Q9NRR8 79 aa4.06□□□□□ -1.76
SCN1A-203ENST00000409050 ZNF861PO60384 105 aa4.06□□□□□ -1.76
SCN1A-203ENST00000409050 IGFL1Q6UW32 110 aa4.06□□□□□ -1.76
SCN1A-203ENST00000409050 FAM104AQ969W3 186 aa4.06□□□□□ -1.76
SCN1A-203ENST00000409050 OBSCN-AS1Q96MR7 158 aa4.06□□□□□ -1.76
SCN1A-203ENST00000409050 CSNK1G2-AS1Q8NCQ2 148 aa4.05□□□□□ -1.76
SCN1A-203ENST00000409050 Q96NJ1 140 aa4.05□□□□□ -1.76
SCN1A-203ENST00000409050 Q9UF83 564 aa4.05□□□□□ -1.76
SCN1A-203ENST00000409050 COL4A2P08572 1712 aa4.05□□□□□ -1.76
SCN1A-203ENST00000409050 WWC2-AS2Q96NR7 200 aa4.05□□□□□ -1.76
SCN1A-203ENST00000409050 CNBPP62633 177 aaKnown RBP4.04□□□□□ -1.76
SCN1A-203ENST00000409050 IGLV5-48A0A075B6I7 105 aa4.04□□□□□ -1.76
SCN1A-203ENST00000409050 Q1T7F1 81 aa4.04□□□□□ -1.76
SCN1A-203ENST00000409050 C19orf73Q9NVV2 129 aa4.04□□□□□ -1.76
SCN1A-203ENST00000409050 AGRNO00468 2067 aa4.04□□□□□ -1.76
SCN1A-203ENST00000409050 PTPN13Q12923 2485 aa4.03□□□□□ -1.76
SCN1A-203ENST00000409050 C9orf163Q8N9P6 203 aa4.03□□□□□ -1.76
SCN1A-203ENST00000409050 LINC00336Q6ZUF6 198 aa4.03□□□□□ -1.76
SCN1A-203ENST00000409050 Q8N377 158 aa4.03□□□□□ -1.76
SCN1A-203ENST00000409050 LINC00304Q8N9R0 145 aa4.03□□□□□ -1.76
SCN1A-203ENST00000409050 MYO9AB2RTY4 2548 aa4.02□□□□□ -1.77
SCN1A-203ENST00000409050 TET2Q6N021 2002 aaPredicted RBP4.01□□□□□ -1.77
SCN1A-203ENST00000409050 PTPRBP23467 1997 aa4.01□□□□□ -1.77
SCN1A-203ENST00000409050 RBM12B-AS1Q9P1G2 102 aa4□□□□□ -1.77
SCN1A-203ENST00000409050 C2CD3Q4AC94 2353 aa4□□□□□ -1.77
SCN1A-203ENST00000409050 SPRR4Q96PI1 79 aa3.99□□□□□ -1.77
SCN1A-203ENST00000409050 ABCA2Q9BZC7 2435 aa3.98□□□□□ -1.77
SCN1A-203ENST00000409050 IGLV7-43P04211 117 aa3.98□□□□□ -1.77
SCN1A-203ENST00000409050 KRTAP24-1Q3LI83 254 aa3.98□□□□□ -1.77
SCN1A-203ENST00000409050 IGLV7-46A0A075B6I9 117 aa3.98□□□□□ -1.77
SCN1A-203ENST00000409050 C9orf129Q5T035 196 aaKnown RBP3.97□□□□□ -1.77
SCN1A-203ENST00000409050 Q75L30 129 aa3.97□□□□□ -1.77
SCN1A-203ENST00000409050 FAM229BQ4G0N7 80 aa3.97□□□□□ -1.77
SCN1A-203ENST00000409050 PCSK5Q92824 1860 aa3.97□□□□□ -1.77
SCN1A-203ENST00000409050 HIVEP3Q5T1R4 2406 aa3.97□□□□□ -1.77
SCN1A-203ENST00000409050 LUZP6Q538Z0 58 aa3.97□□□□□ -1.77
SCN1A-203ENST00000409050 OCR1Q9BZK8 76 aa3.97□□□□□ -1.77
SCN1A-203ENST00000409050 ZNF575Q86XF7 245 aa3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 121.5 ms