RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 TMEM256-PLSCR3K7ERE1 68 aa6.22□□□□□ -1.41
LIG4-202ENST00000405925 C2orf48Q96LS8 159 aa6.22□□□□□ -1.41
LIG4-202ENST00000405925 LINC00612Q8N6U2 182 aa6.22□□□□□ -1.41
LIG4-202ENST00000405925 C7orf33Q8WU49 177 aa6.22□□□□□ -1.41
LIG4-202ENST00000405925 RBM3P98179 157 aaKnown RBP6.21□□□□□ -1.41
LIG4-202ENST00000405925 IGLV5-52A0A0A0MRZ9 124 aa6.21□□□□□ -1.42
LIG4-202ENST00000405925 JMJD7-PLA2G4BH0Y9G9 81 aa6.21□□□□□ -1.42
LIG4-202ENST00000405925 M0QXV9 152 aa6.21□□□□□ -1.42
LIG4-202ENST00000405925 TRACP01848 142 aa6.21□□□□□ -1.42
LIG4-202ENST00000405925 FOXI1Q12951 378 aa6.21□□□□□ -1.42
LIG4-202ENST00000405925 Q6ZQY7 126 aa6.21□□□□□ -1.42
LIG4-202ENST00000405925 LINC01561Q8N1V8 128 aa6.21□□□□□ -1.42
LIG4-202ENST00000405925 C9orf153Q5TBE3 101 aa6.21□□□□□ -1.42
LIG4-202ENST00000405925 WWC2-AS2Q96NR7 200 aa6.21□□□□□ -1.42
LIG4-202ENST00000405925 IGLV5-45A0A087WSX0 123 aa6.2□□□□□ -1.42
LIG4-202ENST00000405925 TRBV10-3A0A0K0K1G6 114 aa6.2□□□□□ -1.42
LIG4-202ENST00000405925 ZNF73O43830 326 aaPredicted RBP6.2□□□□□ -1.42
LIG4-202ENST00000405925 PCP4P48539 62 aa6.2□□□□□ -1.42
LIG4-202ENST00000405925 ENHOQ6UWT2 76 aa6.2□□□□□ -1.42
LIG4-202ENST00000405925 LINC00474Q9P2X8 69 aa6.2□□□□□ -1.42
LIG4-202ENST00000405925 WIPF1O43516 503 aa6.2□□□□□ -1.42
LIG4-202ENST00000405925 ZNF575Q86XF7 245 aa6.2□□□□□ -1.42
LIG4-202ENST00000405925 C14orf132Q9NPU4 83 aa6.2□□□□□ -1.42
LIG4-202ENST00000405925 H3BQ85 93 aa6.19□□□□□ -1.42
LIG4-202ENST00000405925 ASH1LQ9NR48 2969 aaKnown RBP6.19□□□□□ -1.42
LIG4-202ENST00000405925 PPDPFQ9H3Y8 114 aa6.19□□□□□ -1.42
LIG4-202ENST00000405925 NBDYA0A0U1RRE5 68 aa6.18□□□□□ -1.42
LIG4-202ENST00000405925 C10orf25Q5T742 122 aa6.18□□□□□ -1.42
LIG4-202ENST00000405925 KMT2BQ9UMN6 2715 aaPredicted RBP6.18□□□□□ -1.42
LIG4-202ENST00000405925 FBN2P35556 2912 aa6.18□□□□□ -1.42
LIG4-202ENST00000405925 DNAH10OSP0CZ25 163 aa6.17□□□□□ -1.42
LIG4-202ENST00000405925 LST1O00453 97 aa6.17□□□□□ -1.42
LIG4-202ENST00000405925 TEX49A0A1B0GTD5 131 aa6.16□□□□□ -1.42
LIG4-202ENST00000405925 C4orf48Q5BLP8 95 aa6.16□□□□□ -1.42
LIG4-202ENST00000405925 ANAPC13Q9BS18 74 aa6.16□□□□□ -1.42
LIG4-202ENST00000405925 C6orf48Q9UBA6 75 aa6.16□□□□□ -1.42
LIG4-202ENST00000405925 F8WDY8 70 aa6.16□□□□□ -1.42
LIG4-202ENST00000405925 NREPQ16612 68 aa6.16□□□□□ -1.42
LIG4-202ENST00000405925 TENM4Q6N022 2769 aa6.15□□□□□ -1.42
LIG4-202ENST00000405925 LINC00337Q8N6G1 96 aa6.15□□□□□ -1.42
LIG4-202ENST00000405925 NDUFC2O95298 119 aa6.15□□□□□ -1.43
LIG4-202ENST00000405925 ACYP1P07311 99 aa6.15□□□□□ -1.43
LIG4-202ENST00000405925 DHRS4-AS1Q9P1J3 65 aa6.15□□□□□ -1.43
LIG4-202ENST00000405925 IGKV3D-7A0A0C4DH55 119 aa6.14□□□□□ -1.43
LIG4-202ENST00000405925 RPL28P46779 137 aaKnown RBP6.14□□□□□ -1.43
LIG4-202ENST00000405925 MRPL55Q7Z7F7 128 aaKnown RBP6.14□□□□□ -1.43
LIG4-202ENST00000405925 PDE6GP18545 87 aa6.13□□□□□ -1.43
LIG4-202ENST00000405925 SOSTDC1Q6X4U4 206 aa6.12□□□□□ -1.43
LIG4-202ENST00000405925 MXRA5Q9NR99 2828 aa6.12□□□□□ -1.43
LIG4-202ENST00000405925 REG3GQ6UW15 175 aa6.11□□□□□ -1.43
LIG4-202ENST00000405925 PRR34Q9NV39 138 aa6.11□□□□□ -1.43
LIG4-202ENST00000405925 C22orf24Q9Y442 160 aa6.11□□□□□ -1.43
LIG4-202ENST00000405925 ZFHX4Q86UP3 3567 aa6.11□□□□□ -1.43
LIG4-202ENST00000405925 CCKP06307 115 aa6.11□□□□□ -1.43
LIG4-202ENST00000405925 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.1□□□□□ -1.43
LIG4-202ENST00000405925 A0A087WYN8 130 aa6.09□□□□□ -1.43
LIG4-202ENST00000405925 GVQW2A0A096LPI5 108 aaPredicted RBP6.09□□□□□ -1.43
LIG4-202ENST00000405925 A0A1B0GX51 115 aa6.09□□□□□ -1.43
LIG4-202ENST00000405925 NDUFB1O75438 58 aa6.09□□□□□ -1.43
LIG4-202ENST00000405925 C1orf137Q5JT78 98 aa6.09□□□□□ -1.43
LIG4-202ENST00000405925 Q8N814 137 aa6.09□□□□□ -1.43
LIG4-202ENST00000405925 SMG1Q96Q15 3661 aaKnown RBP6.09□□□□□ -1.44
LIG4-202ENST00000405925 IGLV9-49A0A0B4J1Y8 123 aa6.09□□□□□ -1.44
LIG4-202ENST00000405925 PRLHP81277 87 aa6.09□□□□□ -1.44
LIG4-202ENST00000405925 C3orf84H3BNL1 204 aa6.08□□□□□ -1.44
LIG4-202ENST00000405925 NDUFS5O43920 106 aa6.08□□□□□ -1.44
LIG4-202ENST00000405925 CHTF8P0CG12 524 aa6.08□□□□□ -1.44
LIG4-202ENST00000405925 ZNF706Q9Y5V0 76 aaPredicted RBP6.08□□□□□ -1.44
LIG4-202ENST00000405925 STAB2Q8WWQ8 2551 aa6.08□□□□□ -1.44
LIG4-202ENST00000405925 PRYO14603 147 aa6.07□□□□□ -1.44
LIG4-202ENST00000405925 NDUFV3P56181 108 aaKnown RBP6.07□□□□□ -1.44
LIG4-202ENST00000405925 LINC00167Q96N53 147 aa6.07□□□□□ -1.44
LIG4-202ENST00000405925 APLNQ9ULZ1 77 aa6.07□□□□□ -1.44
LIG4-202ENST00000405925 H0Y9J4 135 aa6.06□□□□□ -1.44
LIG4-202ENST00000405925 RTL8CO15255 209 aa6.06□□□□□ -1.44
LIG4-202ENST00000405925 BPY2O14599 106 aa6.06□□□□□ -1.44
LIG4-202ENST00000405925 Q6ZRP5 223 aa6.06□□□□□ -1.44
LIG4-202ENST00000405925 SCXQ7RTU7 201 aa6.05□□□□□ -1.44
LIG4-202ENST00000405925 FAM19A3Q7Z5A8 133 aa6.05□□□□□ -1.44
LIG4-202ENST00000405925 KIAA0087Q14695 138 aa6.05□□□□□ -1.44
LIG4-202ENST00000405925 HRCT1Q6UXD1 115 aa6.05□□□□□ -1.44
LIG4-202ENST00000405925 LITAFQ99732 161 aa6.05□□□□□ -1.44
LIG4-202ENST00000405925 C15orf56Q8N910 161 aa6.04□□□□□ -1.44
LIG4-202ENST00000405925 LINC00575Q6W349 94 aa6.04□□□□□ -1.44
LIG4-202ENST00000405925 LINC00643Q86TS7 51 aa6.04□□□□□ -1.44
LIG4-202ENST00000405925 EIF4EBP3O60516 100 aaPredicted RBP6.04□□□□□ -1.44
LIG4-202ENST00000405925 CASC10Q5T4H9 136 aa6.03□□□□□ -1.44
LIG4-202ENST00000405925 SPINK6Q6UWN8 80 aa6.03□□□□□ -1.44
LIG4-202ENST00000405925 PHF5AQ7RTV0 110 aaKnown RBP6.03□□□□□ -1.44
LIG4-202ENST00000405925 UPK3BQ9BT76 320 aa6.03□□□□□ -1.44
LIG4-202ENST00000405925 C16orf90A8MZG2 172 aa6.03□□□□□ -1.44
LIG4-202ENST00000405925 FAM236AA0A1B0GUQ0 79 aa6.02□□□□□ -1.45
LIG4-202ENST00000405925 FAM236BA0A1B0GV22 79 aa6.02□□□□□ -1.45
LIG4-202ENST00000405925 SDIM1Q6ZPB5 146 aa6.01□□□□□ -1.45
LIG4-202ENST00000405925 SMCR5Q8TEV8 140 aa6.01□□□□□ -1.45
LIG4-202ENST00000405925 FAM168BA1KXE4 195 aa6.01□□□□□ -1.45
LIG4-202ENST00000405925 VPREB1P12018 145 aa6□□□□□ -1.45
LIG4-202ENST00000405925 Q9BRP9 147 aa6□□□□□ -1.45
LIG4-202ENST00000405925 A0A087WTM6 91 aa5.99□□□□□ -1.45
LIG4-202ENST00000405925 CIRBP-AS1Q8TBR5 109 aa5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 191.6 ms