RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 DAND5Q8N907 189 aa18.35■□□□□ 0.53
USP42-202ENST00000404008 M0QXV9 152 aa18.34■□□□□ 0.53
USP42-202ENST00000404008 PYY3Q5JQD4 70 aa18.34■□□□□ 0.53
USP42-202ENST00000404008 C7orf33Q8WU49 177 aa18.34■□□□□ 0.53
USP42-202ENST00000404008 VPS13BQ7Z7G8 4022 aa18.34■□□□□ 0.53
USP42-202ENST00000404008 FAM229AH3BQW9 127 aa18.33■□□□□ 0.53
USP42-202ENST00000404008 Q5VSD8 79 aa18.33■□□□□ 0.53
USP42-202ENST00000404008 TIMM17BO60830 172 aa18.32■□□□□ 0.52
USP42-202ENST00000404008 ADAMTSL4-AS1Q5T5F5 129 aa18.32■□□□□ 0.52
USP42-202ENST00000404008 LITAFQ99732 161 aa18.32■□□□□ 0.52
USP42-202ENST00000404008 C22orf24Q9Y442 160 aa18.31■□□□□ 0.52
USP42-202ENST00000404008 IGLV5-37A0A075B6J1 123 aa18.3■□□□□ 0.52
USP42-202ENST00000404008 SCGB1D4Q6XE38 83 aa18.3■□□□□ 0.52
USP42-202ENST00000404008 Q8NDZ9 215 aa18.3■□□□□ 0.52
USP42-202ENST00000404008 SRRM2Q9UQ35 2752 aaKnown RBP18.29■□□□□ 0.52
USP42-202ENST00000404008 VPREB1P12018 145 aa18.29■□□□□ 0.52
USP42-202ENST00000404008 VAMP8Q9BV40 100 aa18.29■□□□□ 0.52
USP42-202ENST00000404008 TP73-AS1Q9UF72 201 aa18.29■□□□□ 0.52
USP42-202ENST00000404008 LOC107984156A0A0G2JMH3 177 aa18.28■□□□□ 0.52
USP42-202ENST00000404008 ARL17AQ8IVW1 177 aa18.28■□□□□ 0.52
USP42-202ENST00000404008 PAM16Q9Y3D7 125 aa18.28■□□□□ 0.52
USP42-202ENST00000404008 RPL24P83731 157 aaKnown RBP18.27■□□□□ 0.51
USP42-202ENST00000404008 RPL37AP61513 92 aaKnown RBP18.26■□□□□ 0.51
USP42-202ENST00000404008 SPATA45Q537H7 98 aa18.26■□□□□ 0.51
USP42-202ENST00000404008 MRPL55Q7Z7F7 128 aaKnown RBP18.26■□□□□ 0.51
USP42-202ENST00000404008 NKAPP1Q8N9T2 125 aa18.26■□□□□ 0.51
USP42-202ENST00000404008 BOD1L2Q8IYS8 172 aa18.25■□□□□ 0.51
USP42-202ENST00000404008 PLA2G1BP04054 148 aaKnown RBP18.24■□□□□ 0.51
USP42-202ENST00000404008 LBHQ53QV2 105 aaPredicted RBP18.24■□□□□ 0.51
USP42-202ENST00000404008 KRTAP10-4P60372 401 aaPredicted RBP18.23■□□□□ 0.51
USP42-202ENST00000404008 TMEM238C9JI98 176 aa18.22■□□□□ 0.51
USP42-202ENST00000404008 COX8AP10176 69 aa18.22■□□□□ 0.51
USP42-202ENST00000404008 MIEN1Q9BRT3 115 aa18.22■□□□□ 0.51
USP42-202ENST00000404008 KRTAP4-5Q9BYR2 181 aa18.22■□□□□ 0.51
USP42-202ENST00000404008 NPC2P61916 151 aa18.21■□□□□ 0.51
USP42-202ENST00000404008 SOSTDC1Q6X4U4 206 aa18.21■□□□□ 0.51
USP42-202ENST00000404008 KRTAP11-1Q8IUC1 163 aa18.21■□□□□ 0.51
USP42-202ENST00000404008 EIF4EBP3O60516 100 aaPredicted RBP18.2■□□□□ 0.5
USP42-202ENST00000404008 UBE2BP63146 152 aa18.2■□□□□ 0.5
USP42-202ENST00000404008 SPANXDQ9BXN6 97 aa18.2■□□□□ 0.5
USP42-202ENST00000404008 SPANXCQ9NY87 97 aa18.2■□□□□ 0.5
USP42-202ENST00000404008 LINC00167Q96N53 147 aa18.19■□□□□ 0.5
USP42-202ENST00000404008 PRR3P79522 188 aaKnown RBP18.18■□□□□ 0.5
USP42-202ENST00000404008 LINC00308Q8TCZ7 52 aa18.18■□□□□ 0.5
USP42-202ENST00000404008 GAGE10A6NGK3 116 aa18.17■□□□□ 0.5
USP42-202ENST00000404008 PSORS1C2Q9UIG4 136 aa18.17■□□□□ 0.5
USP42-202ENST00000404008 DLEU1O43261 78 aa18.17■□□□□ 0.5
USP42-202ENST00000404008 C14orf144Q96I85 54 aa18.16■□□□□ 0.5
USP42-202ENST00000404008 RPL37AP8A6NKH3 93 aa18.14■□□□□ 0.49
USP42-202ENST00000404008 Q6ZVH6 145 aa18.14■□□□□ 0.49
USP42-202ENST00000404008 M0R378 163 aa18.13■□□□□ 0.49
USP42-202ENST00000404008 NCR3O14931 201 aa18.13■□□□□ 0.49
USP42-202ENST00000404008 NDUFC2O95298 119 aa18.13■□□□□ 0.49
USP42-202ENST00000404008 SPANXB1Q9NS25 103 aaPredicted RBP18.1■□□□□ 0.49
USP42-202ENST00000404008 IGLV1-50A0A075B6I6 118 aa18.09■□□□□ 0.49
USP42-202ENST00000404008 LOC105371267A0A1B0GV96 52 aa18.09■□□□□ 0.49
USP42-202ENST00000404008 IFITM1P13164 125 aa18.09■□□□□ 0.49
USP42-202ENST00000404008 ABCA13Q86UQ4 5058 aa18.08■□□□□ 0.49
USP42-202ENST00000404008 IGKV2-28A0A075B6P5 120 aa18.08■□□□□ 0.49
USP42-202ENST00000404008 IGKV2D-28P01615 120 aa18.08■□□□□ 0.49
USP42-202ENST00000404008 C1orf137Q5JT78 98 aa18.08■□□□□ 0.49
USP42-202ENST00000404008 SLC25A34Q6PIV7 304 aa18.08■□□□□ 0.49
USP42-202ENST00000404008 COPS9Q8WXC6 57 aa18.08■□□□□ 0.49
USP42-202ENST00000404008 PPDPFQ9H3Y8 114 aa18.08■□□□□ 0.49
USP42-202ENST00000404008 TRBV10-2A0A0K0K1G8 114 aa18.07■□□□□ 0.48
USP42-202ENST00000404008 S100A12P80511 92 aa18.05■□□□□ 0.48
USP42-202ENST00000404008 MUSTN1Q8IVN3 82 aa18.05■□□□□ 0.48
USP42-202ENST00000404008 PKHD1L1Q86WI1 4243 aa18.05■□□□□ 0.48
USP42-202ENST00000404008 SRSF9Q13242 221 aaKnown RBP eCLIP18.04■□□□□ 0.48
USP42-202ENST00000404008 HNRNPA3P51991 378 aaKnown RBP18.04■□□□□ 0.48
USP42-202ENST00000404008 SMIM6P0DI80 62 aa18.03■□□□□ 0.48
USP42-202ENST00000404008 HIGD1BQ9P298 99 aa18.01■□□□□ 0.47
USP42-202ENST00000404008 TRBV10-3A0A0K0K1G6 114 aa18■□□□□ 0.47
USP42-202ENST00000404008 C2orf91Q6ZV80 131 aa18■□□□□ 0.47
USP42-202ENST00000404008 IGLV7-43P04211 117 aa17.99■□□□□ 0.47
USP42-202ENST00000404008 INAFM2P0DMQ5 153 aa17.98■□□□□ 0.47
USP42-202ENST00000404008 BCE1O60756 84 aa17.97■□□□□ 0.47
USP42-202ENST00000404008 DDTP30046 118 aa17.97■□□□□ 0.47
USP42-202ENST00000404008 HIST1H4GQ99525 98 aa17.97■□□□□ 0.47
USP42-202ENST00000404008 TMEM126AQ9H061 195 aa17.97■□□□□ 0.47
USP42-202ENST00000404008 IGLV6-57P01721 117 aa17.96■□□□□ 0.47
USP42-202ENST00000404008 REG3GQ6UW15 175 aa17.96■□□□□ 0.47
USP42-202ENST00000404008 S100A7L2Q5SY68 101 aa17.95■□□□□ 0.46
USP42-202ENST00000404008 LINC00518Q8N0U6 118 aa17.95■□□□□ 0.46
USP42-202ENST00000404008 KCNQ1DNQ9H478 68 aa17.95■□□□□ 0.46
USP42-202ENST00000404008 PRYO14603 147 aa17.94■□□□□ 0.46
USP42-202ENST00000404008 PCLOQ9Y6V0 5065 aa17.93■□□□□ 0.46
USP42-202ENST00000404008 LINC00337Q8N6G1 96 aa17.91■□□□□ 0.46
USP42-202ENST00000404008 SPINK6Q6UWN8 80 aa17.91■□□□□ 0.46
USP42-202ENST00000404008 UQCR10Q9UDW1 63 aa17.9■□□□□ 0.46
USP42-202ENST00000404008 A4D1N5 150 aa17.88■□□□□ 0.45
USP42-202ENST00000404008 OR13C6PQ8NH95 151 aa17.88■□□□□ 0.45
USP42-202ENST00000404008 ZNF861PO60384 105 aa17.87■□□□□ 0.45
USP42-202ENST00000404008 SPRR1AP35321 89 aa17.87■□□□□ 0.45
USP42-202ENST00000404008 KRTAP13-1Q8IUC0 172 aa17.86■□□□□ 0.45
USP42-202ENST00000404008 TRAV23DV6A0A075B6W5 121 aa17.85■□□□□ 0.45
USP42-202ENST00000404008 TAL2Q16559 108 aa17.85■□□□□ 0.45
USP42-202ENST00000404008 MYCBP2O75592 4640 aa17.85■□□□□ 0.45
USP42-202ENST00000404008 RPL28P46779 137 aaKnown RBP17.84■□□□□ 0.45
USP42-202ENST00000404008 FAM19A1Q7Z5A9 133 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 89 ms