RNA–Protein interactions for RNA: ENST00000362455.1

RNU4-39P-201, Transcript of RNA, U4 small nuclear 39, pseudogene, humanhuman

BASIC

Gene RNU4-39P, Length 127 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-39P-201ENST00000362455 NIT2Q9NQR4 276 aa2.68□□□□□ -1.98
RNU4-39P-201ENST00000362455 LINC00474Q9P2X8 69 aa2.68□□□□□ -1.98
RNU4-39P-201ENST00000362455 LINC00959A0A1B0GUT2 108 aa2.67□□□□□ -1.98
RNU4-39P-201ENST00000362455 CCL25O15444 150 aa2.67□□□□□ -1.98
RNU4-39P-201ENST00000362455 FGF6P10767 208 aa2.67□□□□□ -1.98
RNU4-39P-201ENST00000362455 CCL20P78556 96 aa2.67□□□□□ -1.98
RNU4-39P-201ENST00000362455 COTL1Q14019 142 aa2.67□□□□□ -1.98
RNU4-39P-201ENST00000362455 LINC00299Q6ZSB3 139 aa2.67□□□□□ -1.98
RNU4-39P-201ENST00000362455 NUP35Q8NFH5 326 aa2.67□□□□□ -1.98
RNU4-39P-201ENST00000362455 MBD3L1Q8WWY6 194 aa2.67□□□□□ -1.98
RNU4-39P-201ENST00000362455 RPL39LQ96EH5 51 aaKnown RBP2.67□□□□□ -1.98
RNU4-39P-201ENST00000362455 HIGD2AQ9BW72 106 aa2.67□□□□□ -1.98
RNU4-39P-201ENST00000362455 ALG5Q9Y673 324 aa2.67□□□□□ -1.98
RNU4-39P-201ENST00000362455 TRBV20OR9-2A0A075B6H5 130 aa2.66□□□□□ -1.98
RNU4-39P-201ENST00000362455 IGHV1-58A0A0C4DH39 117 aa2.66□□□□□ -1.98
RNU4-39P-201ENST00000362455 A0A1B0GV50 99 aa2.66□□□□□ -1.98
RNU4-39P-201ENST00000362455 MT-ND6P03923 174 aa2.66□□□□□ -1.98
RNU4-39P-201ENST00000362455 SMIM17P0DL12 118 aa2.66□□□□□ -1.98
RNU4-39P-201ENST00000362455 ESDP10768 282 aa2.66□□□□□ -1.98
RNU4-39P-201ENST00000362455 ZNF22P17026 224 aaPredicted RBP2.66□□□□□ -1.98
RNU4-39P-201ENST00000362455 RPL35P42766 123 aaKnown RBP2.66□□□□□ -1.98
RNU4-39P-201ENST00000362455 C4orf26Q17RF5 130 aa2.66□□□□□ -1.98
RNU4-39P-201ENST00000362455 AKR1C8PQ5T2L2 129 aa2.66□□□□□ -1.98
RNU4-39P-201ENST00000362455 LYZL1Q6UWQ5 148 aa2.66□□□□□ -1.98
RNU4-39P-201ENST00000362455 C9orf62Q8N4C0 152 aa2.66□□□□□ -1.98
RNU4-39P-201ENST00000362455 OR2D3Q8NGH3 330 aa2.66□□□□□ -1.98
RNU4-39P-201ENST00000362455 OR5A1Q8NGJ0 315 aa2.66□□□□□ -1.98
RNU4-39P-201ENST00000362455 TCEAL7Q9BRU2 100 aa2.66□□□□□ -1.98
RNU4-39P-201ENST00000362455 MED28Q9H204 178 aa2.66□□□□□ -1.98
RNU4-39P-201ENST00000362455 CRCT1Q9UGL9 99 aa2.66□□□□□ -1.98
RNU4-39P-201ENST00000362455 LOC107984640A0A0U1RRK4 108 aa2.65□□□□□ -1.99
RNU4-39P-201ENST00000362455 UBE2L6O14933 153 aa2.65□□□□□ -1.99
RNU4-39P-201ENST00000362455 SLC25A20O43772 301 aa2.65□□□□□ -1.99
RNU4-39P-201ENST00000362455 LGALS3P17931 250 aaKnown RBP2.65□□□□□ -1.99
RNU4-39P-201ENST00000362455 SFT2D1Q8WV19 159 aa2.65□□□□□ -1.99
RNU4-39P-201ENST00000362455 S100ZQ8WXG8 99 aa2.65□□□□□ -1.99
RNU4-39P-201ENST00000362455 DIRC1Q969H9 104 aa2.65□□□□□ -1.99
RNU4-39P-201ENST00000362455 CNFNQ9BYD5 112 aa2.65□□□□□ -1.99
RNU4-39P-201ENST00000362455 RNASE7Q9H1E1 156 aaKnown RBP2.65□□□□□ -1.99
RNU4-39P-201ENST00000362455 CDC42SE2Q9NRR3 84 aa2.65□□□□□ -1.99
RNU4-39P-201ENST00000362455 CARHSP1Q9Y2V2 147 aaKnown RBP2.65□□□□□ -1.99
RNU4-39P-201ENST00000362455 FXYD6-FXYD2A0A087WZ82 144 aa2.64□□□□□ -1.99
RNU4-39P-201ENST00000362455 BORCS7-ASMTA0A0B4J1R7 106 aa2.64□□□□□ -1.99
RNU4-39P-201ENST00000362455 A0A1W2PNM2 257 aa2.64□□□□□ -1.99
RNU4-39P-201ENST00000362455 SDHAF1A6NFY7 115 aa2.64□□□□□ -1.99
RNU4-39P-201ENST00000362455 APOMO95445 188 aa2.64□□□□□ -1.99
RNU4-39P-201ENST00000362455 KRTAP4-1Q9BYQ7 146 aa2.64□□□□□ -1.99
RNU4-39P-201ENST00000362455 TRBV6-5A0A0K0K1A5 114 aa2.63□□□□□ -1.99
RNU4-39P-201ENST00000362455 F2Z2F3 143 aa2.63□□□□□ -1.99
RNU4-39P-201ENST00000362455 NCR2O95944 276 aa2.63□□□□□ -1.99
RNU4-39P-201ENST00000362455 IFNA1P01562 189 aa2.63□□□□□ -1.99
RNU4-39P-201ENST00000362455 TRGC1P0CF51 173 aa2.63□□□□□ -1.99
RNU4-39P-201ENST00000362455 ZNF25P17030 456 aaPredicted RBP2.63□□□□□ -1.99
RNU4-39P-201ENST00000362455 POLR2KP53803 58 aaKnown RBP2.63□□□□□ -1.99
RNU4-39P-201ENST00000362455 RPS20P60866 119 aaKnown RBP2.63□□□□□ -1.99
RNU4-39P-201ENST00000362455 SMAGPQ0VAQ4 97 aa2.63□□□□□ -1.99
RNU4-39P-201ENST00000362455 SS18Q15532 418 aa2.63□□□□□ -1.99
RNU4-39P-201ENST00000362455 C5orf38Q86SI9 138 aa2.63□□□□□ -1.99
RNU4-39P-201ENST00000362455 OR10D4PQ8NGN7 298 aa2.63□□□□□ -1.99
RNU4-39P-201ENST00000362455 FAM213BQ8TBF2 198 aa2.63□□□□□ -1.99
RNU4-39P-201ENST00000362455 TMEM242Q9NWH2 141 aa2.63□□□□□ -1.99
RNU4-39P-201ENST00000362455 I3L3M4 83 aa2.62□□□□□ -1.99
RNU4-39P-201ENST00000362455 ARPC5O15511 151 aa2.62□□□□□ -1.99
RNU4-39P-201ENST00000362455 UNQ6190/PRO20217Q6UXQ8 127 aa2.62□□□□□ -1.99
RNU4-39P-201ENST00000362455 SCGB1D4Q6XE38 83 aa2.62□□□□□ -1.99
RNU4-39P-201ENST00000362455 KCNRGQ8N5I3 272 aa2.62□□□□□ -1.99
RNU4-39P-201ENST00000362455 RETNLBQ9BQ08 111 aa2.62□□□□□ -1.99
RNU4-39P-201ENST00000362455 C6orf48Q9UBA6 75 aa2.62□□□□□ -1.99
RNU4-39P-201ENST00000362455 TRAV13-1A0A0B4J241 112 aa2.61□□□□□ -1.99
RNU4-39P-201ENST00000362455 COX7A2LO14548 114 aa2.61□□□□□ -1.99
RNU4-39P-201ENST00000362455 PFDN1O60925 122 aa2.61□□□□□ -1.99
RNU4-39P-201ENST00000362455 GNG4P50150 75 aa2.61□□□□□ -1.99
RNU4-39P-201ENST00000362455 EIF5AP63241 154 aaKnown RBP2.61□□□□□ -1.99
RNU4-39P-201ENST00000362455 Q6ZUT4 128 aa2.61□□□□□ -1.99
RNU4-39P-201ENST00000362455 FAM19A5Q7Z5A7 132 aaPredicted RBP2.61□□□□□ -1.99
RNU4-39P-201ENST00000362455 MRPL35Q9NZE8 188 aaKnown RBP2.61□□□□□ -1.99
RNU4-39P-201ENST00000362455 GNG13Q9P2W3 67 aa2.61□□□□□ -1.99
RNU4-39P-201ENST00000362455 PKIGQ9Y2B9 76 aa2.61□□□□□ -1.99
RNU4-39P-201ENST00000362455 UBE2D4Q9Y2X8 147 aa2.61□□□□□ -1.99
RNU4-39P-201ENST00000362455 TRAV1-1A0A0B4J248 108 aa2.6□□□□□ -1.99
RNU4-39P-201ENST00000362455 TRBV27A0A0K0K1C4 114 aa2.6□□□□□ -1.99
RNU4-39P-201ENST00000362455 C1orf196B1AJZ1 125 aa2.6□□□□□ -1.99
RNU4-39P-201ENST00000362455 UMAD1C9J7I0 102 aa2.6□□□□□ -1.99
RNU4-39P-201ENST00000362455 UBE2D1P51668 147 aa2.6□□□□□ -1.99
RNU4-39P-201ENST00000362455 SPAG11BQ08648 103 aa2.6□□□□□ -1.99
RNU4-39P-201ENST00000362455 EIF5AL1Q6IS14 154 aaKnown RBP2.6□□□□□ -1.99
RNU4-39P-201ENST00000362455 BTF3L4Q96K17 158 aa2.6□□□□□ -1.99
RNU4-39P-201ENST00000362455 SMDT1Q9H4I9 107 aa2.6□□□□□ -1.99
RNU4-39P-201ENST00000362455 TINCRA0A1B0GVN0 87 aa2.59□□□□□ -1.99
RNU4-39P-201ENST00000362455 C7orf77A4D0Y5 90 aa2.59□□□□□ -1.99
RNU4-39P-201ENST00000362455 TPRXLQ17RH7 258 aa2.59□□□□□ -1.99
RNU4-39P-201ENST00000362455 LCE1CQ5T751 118 aa2.59□□□□□ -1.99
RNU4-39P-201ENST00000362455 LCE1BQ5T7P3 118 aa2.59□□□□□ -1.99
RNU4-39P-201ENST00000362455 C2orf82Q6UX34 121 aa2.59□□□□□ -1.99
RNU4-39P-201ENST00000362455 ST20Q9HBF5 79 aa2.59□□□□□ -1.99
RNU4-39P-201ENST00000362455 MED9Q9NWA0 146 aa2.59□□□□□ -1.99
RNU4-39P-201ENST00000362455 LINC00313P59037 77 aa2.58□□□□□ -2
RNU4-39P-201ENST00000362455 RPL39P62891 51 aaKnown RBP2.58□□□□□ -2
RNU4-39P-201ENST00000362455 KRTAP19-2Q3LHN2 52 aa2.58□□□□□ -2
RNU4-39P-201ENST00000362455 TEX261Q6UWH6 196 aa2.58□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms