RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 RNF151Q2KHN1 245 aa12.92□□□□□ -0.34
CLN3-205ENST00000359984 PGPEP1Q9NXJ5 209 aa12.92□□□□□ -0.34
CLN3-205ENST00000359984 DNAH17Q9UFH2 4485 aa12.91□□□□□ -0.34
CLN3-205ENST00000359984 RPL24P83731 157 aaKnown RBP12.91□□□□□ -0.34
CLN3-205ENST00000359984 TSPAN13O95857 204 aa12.9□□□□□ -0.34
CLN3-205ENST00000359984 NPC2P61916 151 aa12.9□□□□□ -0.34
CLN3-205ENST00000359984 A0A0B4J2C4 111 aa12.89□□□□□ -0.35
CLN3-205ENST00000359984 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.88□□□□□ -0.35
CLN3-205ENST00000359984 SOSTDC1Q6X4U4 206 aa12.88□□□□□ -0.35
CLN3-205ENST00000359984 LINC00308Q8TCZ7 52 aa12.88□□□□□ -0.35
CLN3-205ENST00000359984 FRAS1Q86XX4 4008 aa12.88□□□□□ -0.35
CLN3-205ENST00000359984 IFITM1P13164 125 aa12.87□□□□□ -0.35
CLN3-205ENST00000359984 PRO1854Q9UHT4 67 aa12.87□□□□□ -0.35
CLN3-205ENST00000359984 NDUFC2-KCTD14E9PQ53 114 aa12.87□□□□□ -0.35
CLN3-205ENST00000359984 KMT2CQ8NEZ4 4911 aaKnown RBP12.87□□□□□ -0.35
CLN3-205ENST00000359984 SND1-IT1Q9HBX3 110 aa12.86□□□□□ -0.35
CLN3-205ENST00000359984 TLX1NBP0CAT3 122 aa12.85□□□□□ -0.35
CLN3-205ENST00000359984 Q6ZRP5 223 aa12.85□□□□□ -0.35
CLN3-205ENST00000359984 C9orf163Q8N9P6 203 aa12.83□□□□□ -0.36
CLN3-205ENST00000359984 RYR2Q92736 4967 aa12.83□□□□□ -0.36
CLN3-205ENST00000359984 FUSP35637 526 aaKnown RBP eCLIP12.82□□□□□ -0.36
CLN3-205ENST00000359984 GAGE2EQ4V326 116 aa12.82□□□□□ -0.36
CLN3-205ENST00000359984 GAGE2DQ9UEU5 116 aa12.82□□□□□ -0.36
CLN3-205ENST00000359984 LOC107984640A0A0U1RRK4 108 aa12.82□□□□□ -0.36
CLN3-205ENST00000359984 RPL18AQ02543 176 aaKnown RBP12.82□□□□□ -0.36
CLN3-205ENST00000359984 COPS9Q8WXC6 57 aa12.82□□□□□ -0.36
CLN3-205ENST00000359984 XAGE1AQ9HD64 81 aa12.82□□□□□ -0.36
CLN3-205ENST00000359984 LOC107984156A0A0G2JMH3 177 aa12.81□□□□□ -0.36
CLN3-205ENST00000359984 ARL17AQ8IVW1 177 aa12.81□□□□□ -0.36
CLN3-205ENST00000359984 VPS25Q9BRG1 176 aa12.8□□□□□ -0.36
CLN3-205ENST00000359984 PPDPFQ9H3Y8 114 aa12.8□□□□□ -0.36
CLN3-205ENST00000359984 LINC01620Q4KN68 170 aa12.8□□□□□ -0.36
CLN3-205ENST00000359984 H3BMG7 143 aa12.78□□□□□ -0.36
CLN3-205ENST00000359984 GAGE2BQ13066 116 aa12.78□□□□□ -0.36
CLN3-205ENST00000359984 FAT2Q9NYQ8 4349 aa12.78□□□□□ -0.36
CLN3-205ENST00000359984 C9orf129Q5T035 196 aaKnown RBP12.77□□□□□ -0.37
CLN3-205ENST00000359984 PRO0461Q9UI25 63 aa12.77□□□□□ -0.37
CLN3-205ENST00000359984 HECTD4Q9Y4D8 3996 aa12.77□□□□□ -0.37
CLN3-205ENST00000359984 LYRM7Q5U5X0 104 aa12.76□□□□□ -0.37
CLN3-205ENST00000359984 SDIM1Q6ZPB5 146 aa12.76□□□□□ -0.37
CLN3-205ENST00000359984 IGLV5-52A0A0A0MRZ9 124 aa12.76□□□□□ -0.37
CLN3-205ENST00000359984 KRTAP10-2P60368 255 aa12.76□□□□□ -0.37
CLN3-205ENST00000359984 LINC00336Q6ZUF6 198 aa12.76□□□□□ -0.37
CLN3-205ENST00000359984 Q8NDZ9 215 aa12.76□□□□□ -0.37
CLN3-205ENST00000359984 DNAH11Q96DT5 4516 aa12.75□□□□□ -0.37
CLN3-205ENST00000359984 A0A096LNI7 61 aa12.75□□□□□ -0.37
CLN3-205ENST00000359984 F8W1H4 67 aa12.75□□□□□ -0.37
CLN3-205ENST00000359984 OCIAD2Q56VL3 154 aa12.74□□□□□ -0.37
CLN3-205ENST00000359984 C16orf90A8MZG2 172 aa12.74□□□□□ -0.37
CLN3-205ENST00000359984 TCL1BO95988 128 aa12.73□□□□□ -0.37
CLN3-205ENST00000359984 TRBV20-1A0A075B6N2 111 aa12.72□□□□□ -0.37
CLN3-205ENST00000359984 PRR3P79522 188 aaKnown RBP12.72□□□□□ -0.37
CLN3-205ENST00000359984 IGKV2-24A0A0C4DH68 120 aa12.72□□□□□ -0.37
CLN3-205ENST00000359984 NDUFC2O95298 119 aa12.72□□□□□ -0.37
CLN3-205ENST00000359984 PSMB2P49721 201 aa12.72□□□□□ -0.37
CLN3-205ENST00000359984 PKIGQ9Y2B9 76 aa12.72□□□□□ -0.37
CLN3-205ENST00000359984 IGKV2-28A0A075B6P5 120 aa12.71□□□□□ -0.37
CLN3-205ENST00000359984 H7C2G1 150 aa12.71□□□□□ -0.37
CLN3-205ENST00000359984 IGKV2D-28P01615 120 aa12.71□□□□□ -0.37
CLN3-205ENST00000359984 K7ERU9 68 aa12.7□□□□□ -0.38
CLN3-205ENST00000359984 CHTF8P0CG12 524 aa12.7□□□□□ -0.38
CLN3-205ENST00000359984 VPREB1P12018 145 aa12.69□□□□□ -0.38
CLN3-205ENST00000359984 PKD1P98161 4303 aa12.69□□□□□ -0.38
CLN3-205ENST00000359984 FAM168BA1KXE4 195 aa12.68□□□□□ -0.38
CLN3-205ENST00000359984 SCGB1C2P0DMR2 95 aa12.68□□□□□ -0.38
CLN3-205ENST00000359984 TRIAP1O43715 76 aa12.68□□□□□ -0.38
CLN3-205ENST00000359984 SMCPP49901 116 aaPredicted RBP12.68□□□□□ -0.38
CLN3-205ENST00000359984 Q1RN00 199 aa12.68□□□□□ -0.38
CLN3-205ENST00000359984 SERTAD4-AS1Q5TG53 156 aa12.68□□□□□ -0.38
CLN3-205ENST00000359984 PLA2G2DQ9UNK4 145 aa12.68□□□□□ -0.38
CLN3-205ENST00000359984 PANO1I0J062 215 aa12.67□□□□□ -0.38
CLN3-205ENST00000359984 NCR3O14931 201 aa12.67□□□□□ -0.38
CLN3-205ENST00000359984 LINC00337Q8N6G1 96 aa12.67□□□□□ -0.38
CLN3-205ENST00000359984 SCGB1A1P11684 91 aa12.66□□□□□ -0.38
CLN3-205ENST00000359984 RPL13AP40429 203 aaKnown RBP12.66□□□□□ -0.38
CLN3-205ENST00000359984 KRTAP7-1Q8IUC3 87 aa12.66□□□□□ -0.38
CLN3-205ENST00000359984 MTURNQ8N3F0 131 aa12.66□□□□□ -0.38
CLN3-205ENST00000359984 LINC00474Q9P2X8 69 aa12.65□□□□□ -0.38
CLN3-205ENST00000359984 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.65□□□□□ -0.38
CLN3-205ENST00000359984 A0A1W2PNN7 141 aa12.63□□□□□ -0.39
CLN3-205ENST00000359984 TRAV13-2A0A0B4J235 113 aa12.63□□□□□ -0.39
CLN3-205ENST00000359984 TRBV10-2A0A0K0K1G8 114 aa12.63□□□□□ -0.39
CLN3-205ENST00000359984 A0A1B0GVY2 172 aa12.63□□□□□ -0.39
CLN3-205ENST00000359984 FAM19A5Q7Z5A7 132 aaPredicted RBP12.63□□□□□ -0.39
CLN3-205ENST00000359984 RYR3Q15413 4870 aa12.63□□□□□ -0.39
CLN3-205ENST00000359984 DNAH5Q8TE73 4624 aa12.62□□□□□ -0.39
CLN3-205ENST00000359984 SPACA4Q8TDM5 124 aa12.62□□□□□ -0.39
CLN3-205ENST00000359984 IGLV5-37A0A075B6J1 123 aa12.61□□□□□ -0.39
CLN3-205ENST00000359984 OR13C6PQ8NH95 151 aa12.61□□□□□ -0.39
CLN3-205ENST00000359984 M0R378 163 aa12.61□□□□□ -0.39
CLN3-205ENST00000359984 ETDBQ3ZM63 59 aa12.61□□□□□ -0.39
CLN3-205ENST00000359984 NKAPP1Q8N9T2 125 aa12.61□□□□□ -0.39
CLN3-205ENST00000359984 C22orf24Q9Y442 160 aa12.6□□□□□ -0.39
CLN3-205ENST00000359984 ATXN8Q156A1 80 aa12.59□□□□□ -0.39
CLN3-205ENST00000359984 DPH3Q96FX2 82 aa12.59□□□□□ -0.39
CLN3-205ENST00000359984 KRTAP10-1P60331 282 aa12.59□□□□□ -0.39
CLN3-205ENST00000359984 COX6CP09669 75 aa12.58□□□□□ -0.4
CLN3-205ENST00000359984 S100A7L2Q5SY68 101 aa12.58□□□□□ -0.4
CLN3-205ENST00000359984 C7orf33Q8WU49 177 aa12.57□□□□□ -0.4
CLN3-205ENST00000359984 A0A1B0GV72 72 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms