RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 CIRBPQ14011 172 aaKnown RBP4.64□□□□□ -1.67
VPS13A-201ENST00000355766 LCE1EQ5T753 118 aa4.64□□□□□ -1.67
VPS13A-201ENST00000355766 Q8IZM0 81 aa4.64□□□□□ -1.67
VPS13A-201ENST00000355766 CEND1Q8N111 149 aa4.64□□□□□ -1.67
VPS13A-201ENST00000355766 ZNF625Q96I27 306 aaPredicted RBP4.64□□□□□ -1.67
VPS13A-201ENST00000355766 SPANXDQ9BXN6 97 aa4.64□□□□□ -1.67
VPS13A-201ENST00000355766 SPANXCQ9NY87 97 aa4.64□□□□□ -1.67
VPS13A-201ENST00000355766 FLG2Q5D862 2391 aaPredicted RBP4.64□□□□□ -1.67
VPS13A-201ENST00000355766 A0A1B0GWB2 263 aa4.63□□□□□ -1.67
VPS13A-201ENST00000355766 COX7A2LO14548 114 aa4.63□□□□□ -1.67
VPS13A-201ENST00000355766 APOMO95445 188 aa4.63□□□□□ -1.67
VPS13A-201ENST00000355766 SPINK8P0C7L1 97 aa4.63□□□□□ -1.67
VPS13A-201ENST00000355766 COX6A2Q02221 97 aa4.63□□□□□ -1.67
VPS13A-201ENST00000355766 LINC00269Q8N2A0 174 aa4.63□□□□□ -1.67
VPS13A-201ENST00000355766 HIST1H4GQ99525 98 aa4.63□□□□□ -1.67
VPS13A-201ENST00000355766 TRAV8-3A0A0A6YYJ7 113 aa4.62□□□□□ -1.67
VPS13A-201ENST00000355766 HINT1P49773 126 aaPredicted RBP4.62□□□□□ -1.67
VPS13A-201ENST00000355766 RPL24P83731 157 aaKnown RBP4.62□□□□□ -1.67
VPS13A-201ENST00000355766 ESRGQ1W209 222 aa4.62□□□□□ -1.67
VPS13A-201ENST00000355766 COX7B2Q8TF08 81 aa4.62□□□□□ -1.67
VPS13A-201ENST00000355766 CHCHD10Q8WYQ3 142 aaPredicted RBP4.62□□□□□ -1.67
VPS13A-201ENST00000355766 TTTY13Q9BZ97 58 aa4.62□□□□□ -1.67
VPS13A-201ENST00000355766 IGHV3-64A0A075B6Q5 118 aa4.61□□□□□ -1.67
VPS13A-201ENST00000355766 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.61□□□□□ -1.67
VPS13A-201ENST00000355766 IBA57-AS1B1ANH7 110 aa4.61□□□□□ -1.67
VPS13A-201ENST00000355766 IGHV3-30P01768 117 aa4.61□□□□□ -1.67
VPS13A-201ENST00000355766 PRSS2P07478 247 aa4.61□□□□□ -1.67
VPS13A-201ENST00000355766 IGHV3-30-5P0DP03 117 aa4.61□□□□□ -1.67
VPS13A-201ENST00000355766 XCL1P47992 114 aa4.61□□□□□ -1.67
VPS13A-201ENST00000355766 SRSF9Q13242 221 aaKnown RBP eCLIP4.61□□□□□ -1.67
VPS13A-201ENST00000355766 COX17Q14061 63 aa4.61□□□□□ -1.67
VPS13A-201ENST00000355766 TTC32Q5I0X7 151 aa4.61□□□□□ -1.67
VPS13A-201ENST00000355766 SERTAD4-AS1Q5TG53 156 aa4.61□□□□□ -1.67
VPS13A-201ENST00000355766 RMI2Q96E14 147 aa4.61□□□□□ -1.67
VPS13A-201ENST00000355766 LITAFQ99732 161 aa4.61□□□□□ -1.67
VPS13A-201ENST00000355766 Q9H8V8 135 aa4.61□□□□□ -1.67
VPS13A-201ENST00000355766 A0A0B4J2C4 111 aa4.6□□□□□ -1.67
VPS13A-201ENST00000355766 BATFQ16520 125 aa4.6□□□□□ -1.67
VPS13A-201ENST00000355766 ENHOQ6UWT2 76 aa4.6□□□□□ -1.67
VPS13A-201ENST00000355766 WFDC10BQ8IUB3 73 aa4.6□□□□□ -1.67
VPS13A-201ENST00000355766 KLK12Q9UKR0 248 aa4.6□□□□□ -1.67
VPS13A-201ENST00000355766 LINC00588Q9Y4M8 146 aa4.6□□□□□ -1.67
VPS13A-201ENST00000355766 GVQW2A0A096LPI5 108 aaPredicted RBP4.59□□□□□ -1.67
VPS13A-201ENST00000355766 SMR3BP02814 79 aaPredicted RBP4.59□□□□□ -1.67
VPS13A-201ENST00000355766 FXYD2P54710 66 aa4.59□□□□□ -1.67
VPS13A-201ENST00000355766 IGKV3OR2-268A0A0C4DH90 116 aa4.58□□□□□ -1.68
VPS13A-201ENST00000355766 LOC107984156A0A0G2JMH3 177 aa4.58□□□□□ -1.68
VPS13A-201ENST00000355766 SMIM13P0DJ93 91 aa4.58□□□□□ -1.68
VPS13A-201ENST00000355766 FUSP35637 526 aaKnown RBP eCLIP4.58□□□□□ -1.68
VPS13A-201ENST00000355766 CKS1BP61024 79 aa4.58□□□□□ -1.68
VPS13A-201ENST00000355766 LYRM7Q5U5X0 104 aa4.58□□□□□ -1.68
VPS13A-201ENST00000355766 CFAP161Q6P656 301 aa4.58□□□□□ -1.68
VPS13A-201ENST00000355766 ARL17AQ8IVW1 177 aa4.58□□□□□ -1.68
VPS13A-201ENST00000355766 UBE2WQ96B02 151 aa4.58□□□□□ -1.68
VPS13A-201ENST00000355766 TAX1BP3O14907 124 aa4.57□□□□□ -1.68
VPS13A-201ENST00000355766 KRTAP10-1P60331 282 aa4.57□□□□□ -1.68
VPS13A-201ENST00000355766 KIAA0087Q14695 138 aa4.57□□□□□ -1.68
VPS13A-201ENST00000355766 C6orf226Q5I0X4 101 aa4.57□□□□□ -1.68
VPS13A-201ENST00000355766 MEIG1Q5JSS6 88 aa4.57□□□□□ -1.68
VPS13A-201ENST00000355766 KRTAP26-1Q6PEX3 210 aa4.57□□□□□ -1.68
VPS13A-201ENST00000355766 CLPSL2Q6UWE3 100 aa4.57□□□□□ -1.68
VPS13A-201ENST00000355766 Q6ZRN7 208 aaPredicted RBP4.57□□□□□ -1.68
VPS13A-201ENST00000355766 C5orf38Q86SI9 138 aa4.57□□□□□ -1.68
VPS13A-201ENST00000355766 C2orf48Q96LS8 159 aa4.57□□□□□ -1.68
VPS13A-201ENST00000355766 ERG28Q9UKR5 140 aa4.57□□□□□ -1.68
VPS13A-201ENST00000355766 TRBV30A0A0K0K1B3 111 aa4.56□□□□□ -1.68
VPS13A-201ENST00000355766 IGHV3-33P01772 117 aa4.56□□□□□ -1.68
VPS13A-201ENST00000355766 SPAG11BQ08648 103 aa4.56□□□□□ -1.68
VPS13A-201ENST00000355766 LINC00308Q8TCZ7 52 aa4.56□□□□□ -1.68
VPS13A-201ENST00000355766 NHP2Q9NX24 153 aaKnown RBP4.56□□□□□ -1.68
VPS13A-201ENST00000355766 RNF213Q63HN8 5207 aa4.55□□□□□ -1.68
VPS13A-201ENST00000355766 IGLV10-54A0A075B6I4 117 aa4.55□□□□□ -1.68
VPS13A-201ENST00000355766 A4D1N5 150 aa4.55□□□□□ -1.68
VPS13A-201ENST00000355766 HAMPP81172 84 aa4.55□□□□□ -1.68
VPS13A-201ENST00000355766 ADAMTSL4-AS1Q5T5F5 129 aa4.55□□□□□ -1.68
VPS13A-201ENST00000355766 TOMM7Q9P0U1 55 aa4.55□□□□□ -1.68
VPS13A-201ENST00000355766 PRO1854Q9UHT4 67 aa4.55□□□□□ -1.68
VPS13A-201ENST00000355766 A0A1W2PPM0 123 aa4.54□□□□□ -1.68
VPS13A-201ENST00000355766 NDUFC2O95298 119 aa4.54□□□□□ -1.68
VPS13A-201ENST00000355766 CFC1BP0CG36 223 aa4.54□□□□□ -1.68
VPS13A-201ENST00000355766 CFC1P0CG37 223 aa4.54□□□□□ -1.68
VPS13A-201ENST00000355766 FABP2P12104 132 aa4.54□□□□□ -1.68
VPS13A-201ENST00000355766 GTF2H5Q6ZYL4 71 aa4.54□□□□□ -1.68
VPS13A-201ENST00000355766 MUSTN1Q8IVN3 82 aa4.54□□□□□ -1.68
VPS13A-201ENST00000355766 RAB37Q96AX2 223 aa4.54□□□□□ -1.68
VPS13A-201ENST00000355766 PKIGQ9Y2B9 76 aa4.54□□□□□ -1.68
VPS13A-201ENST00000355766 LRP1Q07954 4544 aaKnown RBP4.54□□□□□ -1.68
VPS13A-201ENST00000355766 TRAV13-2A0A0B4J235 113 aa4.53□□□□□ -1.68
VPS13A-201ENST00000355766 A0A1B0GV90 55 aa4.53□□□□□ -1.68
VPS13A-201ENST00000355766 PRYO14603 147 aa4.53□□□□□ -1.68
VPS13A-201ENST00000355766 C14orf177Q52M58 125 aa4.53□□□□□ -1.68
VPS13A-201ENST00000355766 TRBV20-1A0A075B6N2 111 aa4.52□□□□□ -1.69
VPS13A-201ENST00000355766 IGKV2D-24A0A075B6R9 120 aa4.52□□□□□ -1.69
VPS13A-201ENST00000355766 K7EP34 96 aa4.52□□□□□ -1.69
VPS13A-201ENST00000355766 K7ERJ3 54 aa4.52□□□□□ -1.69
VPS13A-201ENST00000355766 MT3P25713 68 aa4.52□□□□□ -1.69
VPS13A-201ENST00000355766 LINC00158P58513 81 aa4.52□□□□□ -1.69
VPS13A-201ENST00000355766 MIR7-3HGQ8N6C7 128 aa4.52□□□□□ -1.69
VPS13A-201ENST00000355766 C15orf56Q8N910 161 aa4.52□□□□□ -1.69
VPS13A-201ENST00000355766 FAT3Q8TDW7 4589 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms