RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 CXCL5P42830 114 aa6.97□□□□□ -1.29
LIMA1-201ENST00000341247 RPL18AQ02543 176 aaKnown RBP6.97□□□□□ -1.29
LIMA1-201ENST00000341247 H0YGX0 51 aa6.97□□□□□ -1.29
LIMA1-201ENST00000341247 ESRGQ1W209 222 aa6.97□□□□□ -1.29
LIMA1-201ENST00000341247 ANAPC13Q9BS18 74 aa6.97□□□□□ -1.29
LIMA1-201ENST00000341247 MGAM2Q2M2H8 2515 aa6.97□□□□□ -1.29
LIMA1-201ENST00000341247 C6orf99Q4VX62 202 aa6.96□□□□□ -1.29
LIMA1-201ENST00000341247 PPDPFQ9H3Y8 114 aa6.96□□□□□ -1.29
LIMA1-201ENST00000341247 PRR34Q9NV39 138 aa6.96□□□□□ -1.29
LIMA1-201ENST00000341247 DEFB121Q5J5C9 76 aa6.96□□□□□ -1.3
LIMA1-201ENST00000341247 LINC01561Q8N1V8 128 aa6.96□□□□□ -1.3
LIMA1-201ENST00000341247 SMCR5Q8TEV8 140 aa6.96□□□□□ -1.3
LIMA1-201ENST00000341247 DEFB131BA0A096LNP1 70 aa6.95□□□□□ -1.3
LIMA1-201ENST00000341247 KLK5Q9Y337 293 aaPredicted RBP6.95□□□□□ -1.3
LIMA1-201ENST00000341247 ZNF561-AS1K7EIQ3 104 aa6.94□□□□□ -1.3
LIMA1-201ENST00000341247 COX17Q14061 63 aa6.94□□□□□ -1.3
LIMA1-201ENST00000341247 C11orf45Q8TAV5 145 aa6.94□□□□□ -1.3
LIMA1-201ENST00000341247 TMEM126AQ9H061 195 aa6.94□□□□□ -1.3
LIMA1-201ENST00000341247 C6orf48Q9UBA6 75 aa6.94□□□□□ -1.3
LIMA1-201ENST00000341247 TENM2Q9NT68 2774 aa6.94□□□□□ -1.3
LIMA1-201ENST00000341247 IGKV2D-24A0A075B6R9 120 aa6.94□□□□□ -1.3
LIMA1-201ENST00000341247 CAMK2N2Q96S95 79 aa6.93□□□□□ -1.3
LIMA1-201ENST00000341247 ORMDL1Q9P0S3 153 aa6.93□□□□□ -1.3
LIMA1-201ENST00000341247 DNHD1Q96M86 4753 aa6.92□□□□□ -1.3
LIMA1-201ENST00000341247 FAM240AA0A1B0GVK7 77 aa6.92□□□□□ -1.3
LIMA1-201ENST00000341247 INAFM2P0DMQ5 153 aa6.92□□□□□ -1.3
LIMA1-201ENST00000341247 EGFEM1PQ0D2K5 195 aa6.92□□□□□ -1.3
LIMA1-201ENST00000341247 NDUFC2O95298 119 aa6.91□□□□□ -1.3
LIMA1-201ENST00000341247 NDUFV3P56181 108 aaKnown RBP6.91□□□□□ -1.3
LIMA1-201ENST00000341247 Q8N814 137 aa6.91□□□□□ -1.3
LIMA1-201ENST00000341247 Q6ZRU5 148 aa6.9□□□□□ -1.3
LIMA1-201ENST00000341247 C1orf43Q9BWL3 253 aa6.9□□□□□ -1.3
LIMA1-201ENST00000341247 TRBV10-3A0A0K0K1G6 114 aa6.9□□□□□ -1.3
LIMA1-201ENST00000341247 PRKDCP78527 4128 aaKnown RBP6.9□□□□□ -1.31
LIMA1-201ENST00000341247 NHLRC4P0CG21 123 aaPredicted RBP6.89□□□□□ -1.31
LIMA1-201ENST00000341247 STAB2Q8WWQ8 2551 aa6.89□□□□□ -1.31
LIMA1-201ENST00000341247 ACYP1P07311 99 aa6.88□□□□□ -1.31
LIMA1-201ENST00000341247 IGKV3D-7A0A0C4DH55 119 aa6.88□□□□□ -1.31
LIMA1-201ENST00000341247 C15orf56Q8N910 161 aa6.88□□□□□ -1.31
LIMA1-201ENST00000341247 LINC00846Q9NV44 126 aa6.87□□□□□ -1.31
LIMA1-201ENST00000341247 FAM236AA0A1B0GUQ0 79 aa6.87□□□□□ -1.31
LIMA1-201ENST00000341247 FAM236BA0A1B0GV22 79 aa6.87□□□□□ -1.31
LIMA1-201ENST00000341247 PLECQ15149 4684 aaKnown RBP6.87□□□□□ -1.31
LIMA1-201ENST00000341247 KRTAP26-1Q6PEX3 210 aa6.87□□□□□ -1.31
LIMA1-201ENST00000341247 SDIM1Q6ZPB5 146 aa6.87□□□□□ -1.31
LIMA1-201ENST00000341247 CCDC179H3BU77 68 aa6.86□□□□□ -1.31
LIMA1-201ENST00000341247 LINC00643Q86TS7 51 aa6.86□□□□□ -1.31
LIMA1-201ENST00000341247 H3BNG1 76 aa6.86□□□□□ -1.31
LIMA1-201ENST00000341247 LINC00575Q6W349 94 aa6.86□□□□□ -1.31
LIMA1-201ENST00000341247 hADV29S1A0JD25 119 aa6.86□□□□□ -1.31
LIMA1-201ENST00000341247 Q6ZQY7 126 aa6.85□□□□□ -1.31
LIMA1-201ENST00000341247 LAMTOR3Q9UHA4 124 aa6.85□□□□□ -1.31
LIMA1-201ENST00000341247 B5MCH6 92 aa6.85□□□□□ -1.31
LIMA1-201ENST00000341247 TRAV23DV6A0A075B6W5 121 aa6.85□□□□□ -1.31
LIMA1-201ENST00000341247 IGLV6-57P01721 117 aa6.85□□□□□ -1.31
LIMA1-201ENST00000341247 CASC10Q5T4H9 136 aa6.85□□□□□ -1.31
LIMA1-201ENST00000341247 Q6Q795 121 aa6.85□□□□□ -1.31
LIMA1-201ENST00000341247 TMEM256-PLSCR3K7ERE1 68 aa6.84□□□□□ -1.31
LIMA1-201ENST00000341247 LINC01556Q5JQF7 62 aa6.84□□□□□ -1.31
LIMA1-201ENST00000341247 GVQW2A0A096LPI5 108 aaPredicted RBP6.84□□□□□ -1.32
LIMA1-201ENST00000341247 Q6ZRP5 223 aa6.84□□□□□ -1.32
LIMA1-201ENST00000341247 TRBV7-7A0A0K0K1E9 115 aa6.83□□□□□ -1.32
LIMA1-201ENST00000341247 OBSCN-AS1Q96MR7 158 aa6.83□□□□□ -1.32
LIMA1-201ENST00000341247 LINC00588Q9Y4M8 146 aa6.83□□□□□ -1.32
LIMA1-201ENST00000341247 STARD9Q9P2P6 4700 aa6.83□□□□□ -1.32
LIMA1-201ENST00000341247 K7EIL1 84 aa6.83□□□□□ -1.32
LIMA1-201ENST00000341247 DIRC1Q969H9 104 aa6.83□□□□□ -1.32
LIMA1-201ENST00000341247 ZNF73O43830 326 aaPredicted RBP6.83□□□□□ -1.32
LIMA1-201ENST00000341247 A0A087WVE0 104 aa6.82□□□□□ -1.32
LIMA1-201ENST00000341247 VPREB1P12018 145 aa6.82□□□□□ -1.32
LIMA1-201ENST00000341247 SYCNQ0VAF6 134 aa6.82□□□□□ -1.32
LIMA1-201ENST00000341247 LINC00167Q96N53 147 aa6.82□□□□□ -1.32
LIMA1-201ENST00000341247 NDUFC2-KCTD14E9PQ53 114 aa6.81□□□□□ -1.32
LIMA1-201ENST00000341247 TRAV10A0A0B4J240 114 aa6.81□□□□□ -1.32
LIMA1-201ENST00000341247 A0A1B0GX51 115 aa6.8□□□□□ -1.32
LIMA1-201ENST00000341247 M0R2N4 97 aa6.8□□□□□ -1.32
LIMA1-201ENST00000341247 SS18L2Q9UHA2 77 aa6.8□□□□□ -1.32
LIMA1-201ENST00000341247 CCKP06307 115 aa6.8□□□□□ -1.32
LIMA1-201ENST00000341247 JMJD7-PLA2G4BH0Y9G9 81 aa6.8□□□□□ -1.32
LIMA1-201ENST00000341247 COX7BP24311 80 aa6.8□□□□□ -1.32
LIMA1-201ENST00000341247 HIST1H4AP62805 103 aaKnown RBP6.79□□□□□ -1.32
LIMA1-201ENST00000341247 DYNC2H1Q8NCM8 4307 aaKnown RBP6.79□□□□□ -1.32
LIMA1-201ENST00000341247 RBM3P98179 157 aaKnown RBP6.79□□□□□ -1.32
LIMA1-201ENST00000341247 MUC7Q8TAX7 377 aa6.79□□□□□ -1.32
LIMA1-201ENST00000341247 USP17L23D6RBM5 183 aa6.78□□□□□ -1.32
LIMA1-201ENST00000341247 SERTAD4-AS1Q5TG53 156 aa6.78□□□□□ -1.32
LIMA1-201ENST00000341247 KMT2AQ03164 3969 aa6.78□□□□□ -1.32
LIMA1-201ENST00000341247 FAM168BA1KXE4 195 aa6.78□□□□□ -1.32
LIMA1-201ENST00000341247 RPL37AP8A6NKH3 93 aa6.78□□□□□ -1.32
LIMA1-201ENST00000341247 DNAH10OSP0CZ25 163 aa6.78□□□□□ -1.32
LIMA1-201ENST00000341247 C2orf48Q96LS8 159 aa6.78□□□□□ -1.32
LIMA1-201ENST00000341247 M0R378 163 aa6.78□□□□□ -1.32
LIMA1-201ENST00000341247 NKAPP1Q8N9T2 125 aa6.77□□□□□ -1.33
LIMA1-201ENST00000341247 DEFB105AQ8NG35 78 aa6.77□□□□□ -1.33
LIMA1-201ENST00000341247 TM2D3Q9BRN9 247 aa6.77□□□□□ -1.33
LIMA1-201ENST00000341247 IMUPQ9GZP8 106 aa6.76□□□□□ -1.33
LIMA1-201ENST00000341247 MEGF8Q7Z7M0 2845 aa6.76□□□□□ -1.33
LIMA1-201ENST00000341247 ELOF1P60002 83 aaKnown RBP6.75□□□□□ -1.33
LIMA1-201ENST00000341247 DSCR8Q96T75 97 aa6.75□□□□□ -1.33
LIMA1-201ENST00000341247 C7orf33Q8WU49 177 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 86.4 ms