RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 ELOF1P60002 83 aaKnown RBP9.68□□□□□ -0.86
CSPG4-201ENST00000308508 ZFYVE26Q68DK2 2539 aa9.68□□□□□ -0.86
CSPG4-201ENST00000308508 IGHV3OR16-9A0A0B4J2B5 98 aa9.67□□□□□ -0.86
CSPG4-201ENST00000308508 C1orf134Q5TEV5 83 aa9.67□□□□□ -0.86
CSPG4-201ENST00000308508 MOBPQ13875 183 aa9.67□□□□□ -0.86
CSPG4-201ENST00000308508 FAM218AQ96MZ4 157 aa9.66□□□□□ -0.86
CSPG4-201ENST00000308508 KIF25-AS1Q9Y6Z4 181 aa9.66□□□□□ -0.86
CSPG4-201ENST00000308508 Q8NBF4 154 aa9.66□□□□□ -0.86
CSPG4-201ENST00000308508 IGLV8-61A0A075B6I0 122 aa9.66□□□□□ -0.86
CSPG4-201ENST00000308508 ERC2-IT1O76042 136 aa9.66□□□□□ -0.86
CSPG4-201ENST00000308508 ZNF462Q96JM2 2506 aa9.66□□□□□ -0.86
CSPG4-201ENST00000308508 IGLV5-45A0A087WSX0 123 aa9.65□□□□□ -0.86
CSPG4-201ENST00000308508 SSBP3-AS1Q7Z2R9 100 aa9.65□□□□□ -0.86
CSPG4-201ENST00000308508 LINC00313P59037 77 aa9.65□□□□□ -0.86
CSPG4-201ENST00000308508 AVPP01185 164 aa9.64□□□□□ -0.87
CSPG4-201ENST00000308508 C16orf95Q9H693 158 aa9.64□□□□□ -0.87
CSPG4-201ENST00000308508 TLN2Q9Y4G6 2542 aa9.64□□□□□ -0.87
CSPG4-201ENST00000308508 SPACA4Q8TDM5 124 aa9.63□□□□□ -0.87
CSPG4-201ENST00000308508 LINC00167Q96N53 147 aa9.63□□□□□ -0.87
CSPG4-201ENST00000308508 LINC00476Q8WZB0 136 aa9.62□□□□□ -0.87
CSPG4-201ENST00000308508 LOC101927531A0A1B0GV80 90 aa9.62□□□□□ -0.87
CSPG4-201ENST00000308508 FAM19A4Q96LR4 140 aa9.61□□□□□ -0.87
CSPG4-201ENST00000308508 Q6ZRX8 168 aa9.61□□□□□ -0.87
CSPG4-201ENST00000308508 UQCR11O14957 56 aa9.61□□□□□ -0.87
CSPG4-201ENST00000308508 CD164Q04900 197 aa9.6□□□□□ -0.87
CSPG4-201ENST00000308508 LINC01600Q96MT4 127 aa9.59□□□□□ -0.87
CSPG4-201ENST00000308508 ABCA12Q86UK0 2595 aa9.59□□□□□ -0.87
CSPG4-201ENST00000308508 COA5Q86WW8 74 aa9.58□□□□□ -0.88
CSPG4-201ENST00000308508 TRBV7-4A0A0J9YYF1 115 aa9.56□□□□□ -0.88
CSPG4-201ENST00000308508 F8P00451 2351 aa9.56□□□□□ -0.88
CSPG4-201ENST00000308508 CRIPTQ9P021 101 aa9.56□□□□□ -0.88
CSPG4-201ENST00000308508 A8MUN3 132 aa9.56□□□□□ -0.88
CSPG4-201ENST00000308508 A8MWP4 228 aa9.54□□□□□ -0.88
CSPG4-201ENST00000308508 LINC00315P59091 139 aa9.54□□□□□ -0.88
CSPG4-201ENST00000308508 TLN1Q9Y490 2541 aaKnown RBP9.54□□□□□ -0.88
CSPG4-201ENST00000308508 MDFIQ99750 246 aa9.53□□□□□ -0.88
CSPG4-201ENST00000308508 KTN1-AS1Q86SY8 53 aa9.52□□□□□ -0.89
CSPG4-201ENST00000308508 SETD2Q9BYW2 2564 aaPredicted RBP9.52□□□□□ -0.89
CSPG4-201ENST00000308508 FAM229AH3BQW9 127 aa9.52□□□□□ -0.89
CSPG4-201ENST00000308508 RPL37AP61513 92 aaKnown RBP9.52□□□□□ -0.89
CSPG4-201ENST00000308508 NHLRC4P0CG21 123 aaPredicted RBP9.52□□□□□ -0.89
CSPG4-201ENST00000308508 CDSNQ15517 529 aa9.51□□□□□ -0.89
CSPG4-201ENST00000308508 FHL3Q13643 280 aa9.51□□□□□ -0.89
CSPG4-201ENST00000308508 MIR22HGQ0VDD5 57 aa9.51□□□□□ -0.89
CSPG4-201ENST00000308508 EPM2AB3EWF7 344 aa9.5□□□□□ -0.89
CSPG4-201ENST00000308508 PKD1L2Q7Z442 2459 aa9.5□□□□□ -0.89
CSPG4-201ENST00000308508 ACANP16112 2415 aa9.49□□□□□ -0.89
CSPG4-201ENST00000308508 H3BNG1 76 aa9.49□□□□□ -0.89
CSPG4-201ENST00000308508 KLKP1Q107X0 134 aa9.49□□□□□ -0.89
CSPG4-201ENST00000308508 SMR3AQ99954 134 aa9.49□□□□□ -0.89
CSPG4-201ENST00000308508 IGF2RP11717 2491 aa9.48□□□□□ -0.89
CSPG4-201ENST00000308508 JMJD1CQ15652 2540 aa9.48□□□□□ -0.89
CSPG4-201ENST00000308508 C16orf90A8MZG2 172 aa9.48□□□□□ -0.89
CSPG4-201ENST00000308508 K7EQZ3 153 aa9.48□□□□□ -0.89
CSPG4-201ENST00000308508 MRPL34Q9BQ48 92 aaKnown RBP9.47□□□□□ -0.89
CSPG4-201ENST00000308508 Q96NJ1 140 aa9.46□□□□□ -0.89
CSPG4-201ENST00000308508 LCA10Q71F78 164 aa9.46□□□□□ -0.89
CSPG4-201ENST00000308508 IGLV6-57P01721 117 aa9.46□□□□□ -0.89
CSPG4-201ENST00000308508 TYMSOSQ8TAI1 123 aa9.46□□□□□ -0.9
CSPG4-201ENST00000308508 PHF5AQ7RTV0 110 aaKnown RBP9.45□□□□□ -0.9
CSPG4-201ENST00000308508 ST20-AS1Q8NBB2 130 aa9.45□□□□□ -0.9
CSPG4-201ENST00000308508 USP9XQ93008 2570 aaPredicted RBP9.44□□□□□ -0.9
CSPG4-201ENST00000308508 GVQW2A0A096LPI5 108 aaPredicted RBP9.44□□□□□ -0.9
CSPG4-201ENST00000308508 LINC00336Q6ZUF6 198 aa9.44□□□□□ -0.9
CSPG4-201ENST00000308508 Q6ZRP5 223 aa9.43□□□□□ -0.9
CSPG4-201ENST00000308508 APLNQ9ULZ1 77 aa9.42□□□□□ -0.9
CSPG4-201ENST00000308508 LITAFQ99732 161 aa9.41□□□□□ -0.9
CSPG4-201ENST00000308508 CHTF8P0CG12 524 aa9.4□□□□□ -0.9
CSPG4-201ENST00000308508 ANKRD17O75179 2603 aaKnown RBP9.38□□□□□ -0.91
CSPG4-201ENST00000308508 KRTAP10-9P60411 292 aa9.38□□□□□ -0.91
CSPG4-201ENST00000308508 PCSK5Q92824 1860 aa9.37□□□□□ -0.91
CSPG4-201ENST00000308508 H7BZZ5 65 aa9.36□□□□□ -0.91
CSPG4-201ENST00000308508 RTL8CO15255 209 aa9.36□□□□□ -0.91
CSPG4-201ENST00000308508 PRR15Q8IV56 129 aa9.36□□□□□ -0.91
CSPG4-201ENST00000308508 PIEZO1Q92508 2521 aa9.34□□□□□ -0.91
CSPG4-201ENST00000308508 A0A1W2PPR1 153 aa9.33□□□□□ -0.92
CSPG4-201ENST00000308508 CDC42SE1Q9NRR8 79 aa9.33□□□□□ -0.92
CSPG4-201ENST00000308508 KCNQ1DNQ9H478 68 aa9.32□□□□□ -0.92
CSPG4-201ENST00000308508 C8orf17Q9NRJ1 99 aa9.31□□□□□ -0.92
CSPG4-201ENST00000308508 LUZP6Q538Z0 58 aa9.3□□□□□ -0.92
CSPG4-201ENST00000308508 C9orf129Q5T035 196 aaKnown RBP9.3□□□□□ -0.92
CSPG4-201ENST00000308508 SPANXA2-OT1Q8N9U9 137 aa9.3□□□□□ -0.92
CSPG4-201ENST00000308508 IGFL1Q6UW32 110 aa9.29□□□□□ -0.92
CSPG4-201ENST00000308508 A0A1B0GVX0 72 aa9.29□□□□□ -0.92
CSPG4-201ENST00000308508 NBDYA0A0U1RRE5 68 aa9.28□□□□□ -0.92
CSPG4-201ENST00000308508 FAM168BA1KXE4 195 aa9.28□□□□□ -0.92
CSPG4-201ENST00000308508 LINC00528Q8N1L1 170 aa9.28□□□□□ -0.92
CSPG4-201ENST00000308508 IGLV1-50A0A075B6I6 118 aa9.28□□□□□ -0.92
CSPG4-201ENST00000308508 C10orf142B7Z368 130 aa9.27□□□□□ -0.92
CSPG4-201ENST00000308508 NCOR2Q9Y618 2525 aa9.27□□□□□ -0.92
CSPG4-201ENST00000308508 DNAH10OSP0CZ25 163 aa9.27□□□□□ -0.93
CSPG4-201ENST00000308508 USP9YO00507 2555 aaPredicted RBP9.27□□□□□ -0.93
CSPG4-201ENST00000308508 LINC00588Q9Y4M8 146 aa9.26□□□□□ -0.93
CSPG4-201ENST00000308508 DSCR10P59022 87 aa9.25□□□□□ -0.93
CSPG4-201ENST00000308508 PRO3102Q9H379 93 aa9.24□□□□□ -0.93
CSPG4-201ENST00000308508 Q8NAQ8 132 aa9.24□□□□□ -0.93
CSPG4-201ENST00000308508 LINC01554Q52M75 96 aa9.23□□□□□ -0.93
CSPG4-201ENST00000308508 ANKRD11Q6UB99 2663 aaPredicted RBP9.23□□□□□ -0.93
CSPG4-201ENST00000308508 CR1P17927 2039 aa9.23□□□□□ -0.93
CSPG4-201ENST00000308508 Q8N377 158 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms