RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 C16orf90A8MZG2 172 aa11.88□□□□□ -0.51
SHANK1-201ENST00000293441 Q9UF83 564 aa11.88□□□□□ -0.51
SHANK1-201ENST00000293441 NBDYA0A0U1RRE5 68 aa11.87□□□□□ -0.51
SHANK1-201ENST00000293441 LINC01546A6NGU7 62 aa11.86□□□□□ -0.51
SHANK1-201ENST00000293441 LINC00588Q9Y4M8 146 aa11.85□□□□□ -0.51
SHANK1-201ENST00000293441 Q8NAQ8 132 aa11.85□□□□□ -0.51
SHANK1-201ENST00000293441 C7orf65Q6ZTY9 151 aa11.85□□□□□ -0.51
SHANK1-201ENST00000293441 CENPFP49454 3210 aa11.85□□□□□ -0.51
SHANK1-201ENST00000293441 CRYGAP11844 174 aa11.84□□□□□ -0.51
SHANK1-201ENST00000293441 SPATA3Q8NHX4 192 aa11.84□□□□□ -0.51
SHANK1-201ENST00000293441 TLN2Q9Y4G6 2542 aa11.84□□□□□ -0.51
SHANK1-201ENST00000293441 C1orf64Q8NEQ6 169 aa11.83□□□□□ -0.52
SHANK1-201ENST00000293441 SMIM29Q86T20 159 aa11.82□□□□□ -0.52
SHANK1-201ENST00000293441 PSPHP1O15172 72 aa11.82□□□□□ -0.52
SHANK1-201ENST00000293441 CXCL6P80162 114 aa11.81□□□□□ -0.52
SHANK1-201ENST00000293441 TMEM254Q8TBM7 123 aa11.81□□□□□ -0.52
SHANK1-201ENST00000293441 TYMSOSQ8TAI1 123 aa11.8□□□□□ -0.52
SHANK1-201ENST00000293441 ANKRD11Q6UB99 2663 aaPredicted RBP11.8□□□□□ -0.52
SHANK1-201ENST00000293441 Q6ZRP5 223 aa11.78□□□□□ -0.52
SHANK1-201ENST00000293441 WWC2-AS2Q96NR7 200 aa11.78□□□□□ -0.52
SHANK1-201ENST00000293441 EPM2AB3EWF7 344 aa11.78□□□□□ -0.52
SHANK1-201ENST00000293441 hDV103S1A0JD37 113 aa11.77□□□□□ -0.52
SHANK1-201ENST00000293441 ELOF1P60002 83 aaKnown RBP11.77□□□□□ -0.52
SHANK1-201ENST00000293441 IGLV5-45A0A087WSX0 123 aa11.76□□□□□ -0.53
SHANK1-201ENST00000293441 C1orf195Q5TG92 126 aa11.76□□□□□ -0.53
SHANK1-201ENST00000293441 USP9XQ93008 2570 aaPredicted RBP11.75□□□□□ -0.53
SHANK1-201ENST00000293441 LINC00476Q8WZB0 136 aa11.74□□□□□ -0.53
SHANK1-201ENST00000293441 FAM218AQ96MZ4 157 aa11.74□□□□□ -0.53
SHANK1-201ENST00000293441 PMAIP1Q13794 54 aa11.74□□□□□ -0.53
SHANK1-201ENST00000293441 Q6ZRX8 168 aa11.74□□□□□ -0.53
SHANK1-201ENST00000293441 ST20-AS1Q8NBB2 130 aa11.73□□□□□ -0.53
SHANK1-201ENST00000293441 Q8NBF4 154 aa11.73□□□□□ -0.53
SHANK1-201ENST00000293441 LINC00313P59037 77 aa11.71□□□□□ -0.54
SHANK1-201ENST00000293441 GVQW2A0A096LPI5 108 aaPredicted RBP11.7□□□□□ -0.54
SHANK1-201ENST00000293441 FAM168BA1KXE4 195 aa11.68□□□□□ -0.54
SHANK1-201ENST00000293441 TP53AIP1Q9HCN2 124 aa11.68□□□□□ -0.54
SHANK1-201ENST00000293441 BCE1O60756 84 aa11.68□□□□□ -0.54
SHANK1-201ENST00000293441 KRTAP10-11P60412 298 aa11.67□□□□□ -0.54
SHANK1-201ENST00000293441 RPL37AP61513 92 aaKnown RBP11.67□□□□□ -0.54
SHANK1-201ENST00000293441 ZNF462Q96JM2 2506 aa11.67□□□□□ -0.54
SHANK1-201ENST00000293441 DNAH10OSP0CZ25 163 aa11.67□□□□□ -0.54
SHANK1-201ENST00000293441 PLA2G1BP04054 148 aaKnown RBP11.66□□□□□ -0.54
SHANK1-201ENST00000293441 J3QL48 77 aa11.66□□□□□ -0.54
SHANK1-201ENST00000293441 ANKRD17O75179 2603 aaKnown RBP11.65□□□□□ -0.54
SHANK1-201ENST00000293441 Q96NJ1 140 aa11.64□□□□□ -0.55
SHANK1-201ENST00000293441 SPTBN4Q9H254 2564 aa11.64□□□□□ -0.55
SHANK1-201ENST00000293441 CEP295Q9C0D2 2601 aa11.64□□□□□ -0.55
SHANK1-201ENST00000293441 SETD2Q9BYW2 2564 aaPredicted RBP11.64□□□□□ -0.55
SHANK1-201ENST00000293441 Q6ZQT0 140 aa11.64□□□□□ -0.55
SHANK1-201ENST00000293441 K7EIL1 84 aa11.63□□□□□ -0.55
SHANK1-201ENST00000293441 ACYP2P14621 99 aa11.63□□□□□ -0.55
SHANK1-201ENST00000293441 CDIP1Q9H305 208 aa11.63□□□□□ -0.55
SHANK1-201ENST00000293441 A0A1B0GU69 56 aa11.63□□□□□ -0.55
SHANK1-201ENST00000293441 SMCPP49901 116 aaPredicted RBP11.59□□□□□ -0.55
SHANK1-201ENST00000293441 CSNK1G2-AS1Q8NCQ2 148 aa11.58□□□□□ -0.56
SHANK1-201ENST00000293441 CHD8Q9HCK8 2581 aa11.58□□□□□ -0.56
SHANK1-201ENST00000293441 SERTAD4-AS1Q5TG53 156 aa11.58□□□□□ -0.56
SHANK1-201ENST00000293441 USP9YO00507 2555 aaPredicted RBP11.58□□□□□ -0.56
SHANK1-201ENST00000293441 ATP11AUNQ6ZP68 121 aa11.57□□□□□ -0.56
SHANK1-201ENST00000293441 A0A1B0GW54 56 aa11.56□□□□□ -0.56
SHANK1-201ENST00000293441 LOC110117498A0A087WWA1 95 aa11.56□□□□□ -0.56
SHANK1-201ENST00000293441 KRTAP10-3P60369 221 aa11.56□□□□□ -0.56
SHANK1-201ENST00000293441 VPREB1P12018 145 aa11.56□□□□□ -0.56
SHANK1-201ENST00000293441 KLK9Q2XQG4 91 aa11.55□□□□□ -0.56
SHANK1-201ENST00000293441 UTRNP46939 3433 aa11.55□□□□□ -0.56
SHANK1-201ENST00000293441 SPAG11AQ6PDA7 123 aa11.53□□□□□ -0.56
SHANK1-201ENST00000293441 IGLV6-57P01721 117 aa11.52□□□□□ -0.57
SHANK1-201ENST00000293441 PKD1L2Q7Z442 2459 aa11.51□□□□□ -0.57
SHANK1-201ENST00000293441 TRAV22A0A0B4J277 110 aa11.51□□□□□ -0.57
SHANK1-201ENST00000293441 C19orf73Q9NVV2 129 aa11.51□□□□□ -0.57
SHANK1-201ENST00000293441 IGLV1-50A0A075B6I6 118 aa11.5□□□□□ -0.57
SHANK1-201ENST00000293441 IGLV8-61A0A075B6I0 122 aa11.49□□□□□ -0.57
SHANK1-201ENST00000293441 A0A096LNT2 108 aa11.48□□□□□ -0.57
SHANK1-201ENST00000293441 LITAFQ99732 161 aa11.47□□□□□ -0.57
SHANK1-201ENST00000293441 TRBV7-4A0A0J9YYF1 115 aa11.47□□□□□ -0.57
SHANK1-201ENST00000293441 MTORP42345 2549 aa11.47□□□□□ -0.57
SHANK1-201ENST00000293441 PRO0461Q9UI25 63 aa11.46□□□□□ -0.57
SHANK1-201ENST00000293441 SMR3BP02814 79 aaPredicted RBP11.46□□□□□ -0.57
SHANK1-201ENST00000293441 POLQO75417 2590 aa11.46□□□□□ -0.58
SHANK1-201ENST00000293441 TM2D3Q9BRN9 247 aa11.45□□□□□ -0.58
SHANK1-201ENST00000293441 ACANP16112 2415 aa11.45□□□□□ -0.58
SHANK1-201ENST00000293441 A8MWP4 228 aa11.45□□□□□ -0.58
SHANK1-201ENST00000293441 H3BPC8 53 aa11.45□□□□□ -0.58
SHANK1-201ENST00000293441 C15orf56Q8N910 161 aa11.45□□□□□ -0.58
SHANK1-201ENST00000293441 C8orf87E5RJ46 101 aa11.44□□□□□ -0.58
SHANK1-201ENST00000293441 COX6B2Q6YFQ2 88 aa11.43□□□□□ -0.58
SHANK1-201ENST00000293441 K7EQZ3 153 aa11.42□□□□□ -0.58
SHANK1-201ENST00000293441 KCNQ1DNQ9H478 68 aa11.42□□□□□ -0.58
SHANK1-201ENST00000293441 A0A087WTM6 91 aa11.42□□□□□ -0.58
SHANK1-201ENST00000293441 FASNP49327 2511 aaKnown RBP11.41□□□□□ -0.58
SHANK1-201ENST00000293441 C9orf92A6NGG3 77 aa11.41□□□□□ -0.58
SHANK1-201ENST00000293441 LINC00304Q8N9R0 145 aa11.41□□□□□ -0.58
SHANK1-201ENST00000293441 MRPL34Q9BQ48 92 aaKnown RBP11.41□□□□□ -0.58
SHANK1-201ENST00000293441 DSCR10P59022 87 aa11.41□□□□□ -0.58
SHANK1-201ENST00000293441 GIG44P09565 113 aaPredicted RBP11.4□□□□□ -0.58
SHANK1-201ENST00000293441 PRR34Q9NV39 138 aa11.38□□□□□ -0.59
SHANK1-201ENST00000293441 ZNF861PO60384 105 aa11.38□□□□□ -0.59
SHANK1-201ENST00000293441 C9orf129Q5T035 196 aaKnown RBP11.38□□□□□ -0.59
SHANK1-201ENST00000293441 IGFL1Q6UW32 110 aa11.38□□□□□ -0.59
SHANK1-201ENST00000293441 LOC101927531A0A1B0GV80 90 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms