RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 Q6ZRN7 208 aaPredicted RBP9.24□□□□□ -0.93
SS18-201ENST00000269137 SLPIP03973 132 aa9.23□□□□□ -0.93
SS18-201ENST00000269137 TRBV20-1A0A075B6N2 111 aa9.22□□□□□ -0.93
SS18-201ENST00000269137 LECT2O14960 151 aa9.22□□□□□ -0.93
SS18-201ENST00000269137 CARD19Q96LW7 228 aa9.22□□□□□ -0.93
SS18-201ENST00000269137 NDUFC2-KCTD14E9PQ53 114 aa9.21□□□□□ -0.93
SS18-201ENST00000269137 TCL1BO95988 128 aa9.21□□□□□ -0.93
SS18-201ENST00000269137 C14orf177Q52M58 125 aa9.21□□□□□ -0.93
SS18-201ENST00000269137 LINC00476Q8WZB0 136 aa9.21□□□□□ -0.93
SS18-201ENST00000269137 M0R2N4 97 aa9.21□□□□□ -0.94
SS18-201ENST00000269137 NDUFC2O95298 119 aa9.21□□□□□ -0.94
SS18-201ENST00000269137 SCGB1C2P0DMR2 95 aa9.21□□□□□ -0.94
SS18-201ENST00000269137 MTURNQ8N3F0 131 aa9.2□□□□□ -0.94
SS18-201ENST00000269137 VPS25Q9BRG1 176 aa9.2□□□□□ -0.94
SS18-201ENST00000269137 IGKV2-28A0A075B6P5 120 aa9.19□□□□□ -0.94
SS18-201ENST00000269137 TRAV13-2A0A0B4J235 113 aa9.19□□□□□ -0.94
SS18-201ENST00000269137 LRCOL1A6NCL2 159 aa9.19□□□□□ -0.94
SS18-201ENST00000269137 H7C2G1 150 aa9.19□□□□□ -0.94
SS18-201ENST00000269137 LY6G6CO95867 125 aa9.19□□□□□ -0.94
SS18-201ENST00000269137 IGKV2D-28P01615 120 aa9.19□□□□□ -0.94
SS18-201ENST00000269137 TLX1NBP0CAT3 122 aa9.19□□□□□ -0.94
SS18-201ENST00000269137 DNAH2Q9P225 4427 aa9.19□□□□□ -0.94
SS18-201ENST00000269137 RPL13AP40429 203 aaKnown RBP9.18□□□□□ -0.94
SS18-201ENST00000269137 SMCPP49901 116 aaPredicted RBP9.18□□□□□ -0.94
SS18-201ENST00000269137 CNBPP62633 177 aaKnown RBP9.18□□□□□ -0.94
SS18-201ENST00000269137 Q1RN00 199 aa9.18□□□□□ -0.94
SS18-201ENST00000269137 ETDBQ3ZM63 59 aa9.18□□□□□ -0.94
SS18-201ENST00000269137 LINC00337Q8N6G1 96 aa9.17□□□□□ -0.94
SS18-201ENST00000269137 Q6ZRP5 223 aa9.17□□□□□ -0.94
SS18-201ENST00000269137 XAGE1AQ9HD64 81 aa9.16□□□□□ -0.94
SS18-201ENST00000269137 TRIAP1O43715 76 aa9.15□□□□□ -0.95
SS18-201ENST00000269137 Q8NDZ9 215 aa9.15□□□□□ -0.95
SS18-201ENST00000269137 GAGE2EQ4V326 116 aa9.14□□□□□ -0.95
SS18-201ENST00000269137 GAGE2DQ9UEU5 116 aa9.14□□□□□ -0.95
SS18-201ENST00000269137 J3QR89 54 aa9.13□□□□□ -0.95
SS18-201ENST00000269137 PRR3P79522 188 aaKnown RBP9.13□□□□□ -0.95
SS18-201ENST00000269137 C1orf134Q5TEV5 83 aa9.13□□□□□ -0.95
SS18-201ENST00000269137 TRBV10-2A0A0K0K1G8 114 aa9.12□□□□□ -0.95
SS18-201ENST00000269137 LOC107984640A0A0U1RRK4 108 aa9.12□□□□□ -0.95
SS18-201ENST00000269137 ATXN8Q156A1 80 aa9.12□□□□□ -0.95
SS18-201ENST00000269137 RPL18AQ02543 176 aaKnown RBP9.12□□□□□ -0.95
SS18-201ENST00000269137 DNAH17Q9UFH2 4485 aa9.11□□□□□ -0.95
SS18-201ENST00000269137 A0A087WTM6 91 aa9.11□□□□□ -0.95
SS18-201ENST00000269137 COX6CP09669 75 aa9.11□□□□□ -0.95
SS18-201ENST00000269137 C9orf129Q5T035 196 aaKnown RBP9.11□□□□□ -0.95
SS18-201ENST00000269137 M0QXV9 152 aa9.1□□□□□ -0.95
SS18-201ENST00000269137 VPREB1P12018 145 aa9.1□□□□□ -0.95
SS18-201ENST00000269137 RPL28P46779 137 aaKnown RBP9.1□□□□□ -0.95
SS18-201ENST00000269137 Q8N814 137 aa9.1□□□□□ -0.95
SS18-201ENST00000269137 OR13C6PQ8NH95 151 aa9.1□□□□□ -0.95
SS18-201ENST00000269137 TMEM126AQ9H061 195 aa9.1□□□□□ -0.95
SS18-201ENST00000269137 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.1□□□□□ -0.95
SS18-201ENST00000269137 C9JAW5 83 aa9.1□□□□□ -0.95
SS18-201ENST00000269137 LINC01620Q4KN68 170 aa9.1□□□□□ -0.95
SS18-201ENST00000269137 TEN1Q86WV5 123 aa9.1□□□□□ -0.95
SS18-201ENST00000269137 PLA2G2DQ9UNK4 145 aa9.1□□□□□ -0.95
SS18-201ENST00000269137 NCR3O14931 201 aa9.09□□□□□ -0.95
SS18-201ENST00000269137 SLC25A20O43772 301 aa9.09□□□□□ -0.95
SS18-201ENST00000269137 C9orf163Q8N9P6 203 aa9.08□□□□□ -0.96
SS18-201ENST00000269137 SMIM11BQ8TCY0 68 aa9.08□□□□□ -0.96
SS18-201ENST00000269137 HECTD4Q9Y4D8 3996 aa9.08□□□□□ -0.96
SS18-201ENST00000269137 IGLV6-57P01721 117 aa9.08□□□□□ -0.96
SS18-201ENST00000269137 GAGE2BQ13066 116 aa9.08□□□□□ -0.96
SS18-201ENST00000269137 PPDPFLQ8WWR9 84 aa9.08□□□□□ -0.96
SS18-201ENST00000269137 LINC01600Q96MT4 127 aa9.08□□□□□ -0.96
SS18-201ENST00000269137 M0R378 163 aa9.07□□□□□ -0.96
SS18-201ENST00000269137 S100A7L2Q5SY68 101 aa9.07□□□□□ -0.96
SS18-201ENST00000269137 PKIGQ9Y2B9 76 aa9.07□□□□□ -0.96
SS18-201ENST00000269137 SACSQ9NZJ4 4579 aa9.06□□□□□ -0.96
SS18-201ENST00000269137 C16orf90A8MZG2 172 aa9.06□□□□□ -0.96
SS18-201ENST00000269137 ANKRD29Q8N6D5 301 aa9.06□□□□□ -0.96
SS18-201ENST00000269137 FRAS1Q86XX4 4008 aa9.06□□□□□ -0.96
SS18-201ENST00000269137 LST1O00453 97 aa9.05□□□□□ -0.96
SS18-201ENST00000269137 PCP4P48539 62 aa9.05□□□□□ -0.96
SS18-201ENST00000269137 IGLV5-37A0A075B6J1 123 aa9.05□□□□□ -0.96
SS18-201ENST00000269137 CLEC2BQ92478 149 aa9.05□□□□□ -0.96
SS18-201ENST00000269137 HYDINQ4G0P3 5121 aa9.04□□□□□ -0.96
SS18-201ENST00000269137 SERTAD4-AS1Q5TG53 156 aa9.04□□□□□ -0.96
SS18-201ENST00000269137 A0A096LNI7 61 aa9.03□□□□□ -0.96
SS18-201ENST00000269137 TRBV10-3A0A0K0K1G6 114 aa9.03□□□□□ -0.96
SS18-201ENST00000269137 SDIM1Q6ZPB5 146 aa9.03□□□□□ -0.96
SS18-201ENST00000269137 NKAPP1Q8N9T2 125 aa9.03□□□□□ -0.96
SS18-201ENST00000269137 H0YGX0 51 aa9.02□□□□□ -0.97
SS18-201ENST00000269137 FAM168BA1KXE4 195 aa9.01□□□□□ -0.97
SS18-201ENST00000269137 H3BT86 120 aa9.01□□□□□ -0.97
SS18-201ENST00000269137 RTL8CO15255 209 aa9.01□□□□□ -0.97
SS18-201ENST00000269137 KRTAP7-1Q8IUC3 87 aa9.01□□□□□ -0.97
SS18-201ENST00000269137 LCE6AA0A183 80 aa9□□□□□ -0.97
SS18-201ENST00000269137 TNP2Q05952 138 aa9□□□□□ -0.97
SS18-201ENST00000269137 DNAH11Q96DT5 4516 aa8.99□□□□□ -0.97
SS18-201ENST00000269137 TRAV23DV6A0A075B6W5 121 aa8.99□□□□□ -0.97
SS18-201ENST00000269137 IGKV2-24A0A0C4DH68 120 aa8.99□□□□□ -0.97
SS18-201ENST00000269137 C7orf33Q8WU49 177 aa8.99□□□□□ -0.97
SS18-201ENST00000269137 LINC00474Q9P2X8 69 aa8.99□□□□□ -0.97
SS18-201ENST00000269137 C6orf99Q4VX62 202 aa8.98□□□□□ -0.97
SS18-201ENST00000269137 SIGMAR1Q99720 223 aa8.98□□□□□ -0.97
SS18-201ENST00000269137 C22orf24Q9Y442 160 aa8.98□□□□□ -0.97
SS18-201ENST00000269137 FAM19A5Q7Z5A7 132 aaPredicted RBP8.98□□□□□ -0.97
SS18-201ENST00000269137 FAT2Q9NYQ8 4349 aa8.98□□□□□ -0.97
SS18-201ENST00000269137 FAM218AQ96MZ4 157 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms