RNA–Protein interactions for RNA: ENST00000254667.7

PTPRE-201, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRE, Length 5,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-201ENST00000254667 PCSK5Q92824 1860 aa12.98□□□□□ -0.33
PTPRE-201ENST00000254667 DEFB116Q30KQ4 102 aa12.98□□□□□ -0.33
PTPRE-201ENST00000254667 Q9UF83 564 aa12.98□□□□□ -0.33
PTPRE-201ENST00000254667 ELOF1P60002 83 aaKnown RBP12.97□□□□□ -0.33
PTPRE-201ENST00000254667 SPATA3Q8NHX4 192 aa12.97□□□□□ -0.33
PTPRE-201ENST00000254667 TMEM254Q8TBM7 123 aa12.96□□□□□ -0.33
PTPRE-201ENST00000254667 NBDYA0A0U1RRE5 68 aa12.96□□□□□ -0.33
PTPRE-201ENST00000254667 hDV103S1A0JD37 113 aa12.95□□□□□ -0.34
PTPRE-201ENST00000254667 SOSTDC1Q6X4U4 206 aa12.95□□□□□ -0.34
PTPRE-201ENST00000254667 A0A0U1RQV1 116 aa12.94□□□□□ -0.34
PTPRE-201ENST00000254667 GVQW2A0A096LPI5 108 aaPredicted RBP12.94□□□□□ -0.34
PTPRE-201ENST00000254667 PCOTHQ58A44 107 aa12.94□□□□□ -0.34
PTPRE-201ENST00000254667 LINC00588Q9Y4M8 146 aa12.93□□□□□ -0.34
PTPRE-201ENST00000254667 FASNP49327 2511 aaKnown RBP12.93□□□□□ -0.34
PTPRE-201ENST00000254667 CENPFP49454 3210 aa12.92□□□□□ -0.34
PTPRE-201ENST00000254667 C16orf90A8MZG2 172 aa12.92□□□□□ -0.34
PTPRE-201ENST00000254667 ANKRD17O75179 2603 aaKnown RBP12.91□□□□□ -0.34
PTPRE-201ENST00000254667 Q6ZRX8 168 aa12.91□□□□□ -0.34
PTPRE-201ENST00000254667 RETNLBQ9BQ08 111 aa12.9□□□□□ -0.34
PTPRE-201ENST00000254667 DNAH10OSP0CZ25 163 aa12.89□□□□□ -0.35
PTPRE-201ENST00000254667 CDIP1Q9H305 208 aa12.89□□□□□ -0.35
PTPRE-201ENST00000254667 RTL8CO15255 209 aa12.88□□□□□ -0.35
PTPRE-201ENST00000254667 MOBPQ13875 183 aa12.88□□□□□ -0.35
PTPRE-201ENST00000254667 TP53AIP1Q9HCN2 124 aa12.88□□□□□ -0.35
PTPRE-201ENST00000254667 BCE1O60756 84 aa12.87□□□□□ -0.35
PTPRE-201ENST00000254667 FAM218AQ96MZ4 157 aa12.87□□□□□ -0.35
PTPRE-201ENST00000254667 POLQO75417 2590 aa12.86□□□□□ -0.35
PTPRE-201ENST00000254667 A0A096LNT2 108 aa12.85□□□□□ -0.35
PTPRE-201ENST00000254667 C1orf64Q8NEQ6 169 aa12.85□□□□□ -0.35
PTPRE-201ENST00000254667 LOC110117498A0A087WWA1 95 aa12.85□□□□□ -0.35
PTPRE-201ENST00000254667 Q6ZRP5 223 aa12.85□□□□□ -0.35
PTPRE-201ENST00000254667 PHF5AQ7RTV0 110 aaKnown RBP12.85□□□□□ -0.35
PTPRE-201ENST00000254667 CSNK1G2-AS1Q8NCQ2 148 aa12.85□□□□□ -0.35
PTPRE-201ENST00000254667 MUC4Q99102 2169 aa12.84□□□□□ -0.35
PTPRE-201ENST00000254667 Q8NBF4 154 aa12.84□□□□□ -0.35
PTPRE-201ENST00000254667 SMCPP49901 116 aaPredicted RBP12.84□□□□□ -0.35
PTPRE-201ENST00000254667 WWC2-AS2Q96NR7 200 aa12.82□□□□□ -0.36
PTPRE-201ENST00000254667 SMIM29Q86T20 159 aa12.82□□□□□ -0.36
PTPRE-201ENST00000254667 PRO0461Q9UI25 63 aa12.81□□□□□ -0.36
PTPRE-201ENST00000254667 CRYGAP11844 174 aa12.81□□□□□ -0.36
PTPRE-201ENST00000254667 EPM2AB3EWF7 344 aa12.81□□□□□ -0.36
PTPRE-201ENST00000254667 Q6ZQT0 140 aa12.81□□□□□ -0.36
PTPRE-201ENST00000254667 LINC00476Q8WZB0 136 aa12.81□□□□□ -0.36
PTPRE-201ENST00000254667 SPACA4Q8TDM5 124 aa12.8□□□□□ -0.36
PTPRE-201ENST00000254667 ACANP16112 2415 aa12.8□□□□□ -0.36
PTPRE-201ENST00000254667 FAM229AH3BQW9 127 aa12.78□□□□□ -0.36
PTPRE-201ENST00000254667 SPINK1P00995 79 aa12.78□□□□□ -0.36
PTPRE-201ENST00000254667 LITAFQ99732 161 aa12.78□□□□□ -0.36
PTPRE-201ENST00000254667 IGKV2D-30A0A075B6S6 120 aa12.76□□□□□ -0.37
PTPRE-201ENST00000254667 IGKV2-30P06310 120 aa12.76□□□□□ -0.37
PTPRE-201ENST00000254667 VPREB1P12018 145 aa12.76□□□□□ -0.37
PTPRE-201ENST00000254667 IGLV6-57P01721 117 aa12.75□□□□□ -0.37
PTPRE-201ENST00000254667 C19orf73Q9NVV2 129 aa12.75□□□□□ -0.37
PTPRE-201ENST00000254667 H3BPC8 53 aa12.74□□□□□ -0.37
PTPRE-201ENST00000254667 C1orf195Q5TG92 126 aa12.72□□□□□ -0.37
PTPRE-201ENST00000254667 EPG5Q9HCE0 2579 aa12.71□□□□□ -0.37
PTPRE-201ENST00000254667 ST20-AS1Q8NBB2 130 aa12.71□□□□□ -0.37
PTPRE-201ENST00000254667 TYMSOSQ8TAI1 123 aa12.71□□□□□ -0.38
PTPRE-201ENST00000254667 K7EIL1 84 aa12.69□□□□□ -0.38
PTPRE-201ENST00000254667 TRBV7-4A0A0J9YYF1 115 aa12.69□□□□□ -0.38
PTPRE-201ENST00000254667 KRTAP10-11P60412 298 aa12.69□□□□□ -0.38
PTPRE-201ENST00000254667 PRR34Q9NV39 138 aa12.69□□□□□ -0.38
PTPRE-201ENST00000254667 LINC00612Q8N6U2 182 aa12.68□□□□□ -0.38
PTPRE-201ENST00000254667 PSPHP1O15172 72 aa12.68□□□□□ -0.38
PTPRE-201ENST00000254667 CHTF8P0CG12 524 aa12.68□□□□□ -0.38
PTPRE-201ENST00000254667 C7orf65Q6ZTY9 151 aa12.68□□□□□ -0.38
PTPRE-201ENST00000254667 F8P00451 2351 aa12.67□□□□□ -0.38
PTPRE-201ENST00000254667 PMAIP1Q13794 54 aa12.66□□□□□ -0.38
PTPRE-201ENST00000254667 KCNQ1DNQ9H478 68 aa12.66□□□□□ -0.38
PTPRE-201ENST00000254667 ACYP2P14621 99 aa12.66□□□□□ -0.38
PTPRE-201ENST00000254667 LINC00313P59037 77 aa12.66□□□□□ -0.38
PTPRE-201ENST00000254667 IGLV1-50A0A075B6I6 118 aa12.65□□□□□ -0.38
PTPRE-201ENST00000254667 GIG44P09565 113 aaPredicted RBP12.65□□□□□ -0.38
PTPRE-201ENST00000254667 KRTAP10-3P60369 221 aa12.62□□□□□ -0.39
PTPRE-201ENST00000254667 TRAV22A0A0B4J277 110 aa12.62□□□□□ -0.39
PTPRE-201ENST00000254667 SERTAD4-AS1Q5TG53 156 aa12.61□□□□□ -0.39
PTPRE-201ENST00000254667 FAM168BA1KXE4 195 aa12.61□□□□□ -0.39
PTPRE-201ENST00000254667 PLA2G1BP04054 148 aaKnown RBP12.6□□□□□ -0.39
PTPRE-201ENST00000254667 C8orf87E5RJ46 101 aa12.6□□□□□ -0.39
PTPRE-201ENST00000254667 LINC00528Q8N1L1 170 aa12.58□□□□□ -0.4
PTPRE-201ENST00000254667 C15orf56Q8N910 161 aa12.57□□□□□ -0.4
PTPRE-201ENST00000254667 A8MWP4 228 aa12.56□□□□□ -0.4
PTPRE-201ENST00000254667 RPL37AP61513 92 aaKnown RBP12.56□□□□□ -0.4
PTPRE-201ENST00000254667 KRTAP1-3Q8IUG1 177 aa12.56□□□□□ -0.4
PTPRE-201ENST00000254667 A0A1B0GU69 56 aa12.55□□□□□ -0.4
PTPRE-201ENST00000254667 TM2D3Q9BRN9 247 aa12.55□□□□□ -0.4
PTPRE-201ENST00000254667 TLX1NBP0CAT3 122 aa12.54□□□□□ -0.4
PTPRE-201ENST00000254667 PLA2G2DQ9UNK4 145 aa12.52□□□□□ -0.4
PTPRE-201ENST00000254667 LOC101927531A0A1B0GV80 90 aa12.52□□□□□ -0.41
PTPRE-201ENST00000254667 RPS28P62857 69 aaKnown RBP12.48□□□□□ -0.41
PTPRE-201ENST00000254667 C9orf163Q8N9P6 203 aa12.48□□□□□ -0.41
PTPRE-201ENST00000254667 Q96NJ1 140 aa12.48□□□□□ -0.41
PTPRE-201ENST00000254667 KRTAP1-1Q07627 177 aa12.48□□□□□ -0.41
PTPRE-201ENST00000254667 SSBP3-AS1Q7Z2R9 100 aa12.47□□□□□ -0.41
PTPRE-201ENST00000254667 A0A087WTM6 91 aa12.47□□□□□ -0.41
PTPRE-201ENST00000254667 MRPL34Q9BQ48 92 aaKnown RBP12.47□□□□□ -0.41
PTPRE-201ENST00000254667 ZNF861PO60384 105 aa12.47□□□□□ -0.41
PTPRE-201ENST00000254667 C9orf129Q5T035 196 aaKnown RBP12.46□□□□□ -0.41
PTPRE-201ENST00000254667 ATP11AUNQ6ZP68 121 aa12.46□□□□□ -0.41
PTPRE-201ENST00000254667 ERC2-IT1O76042 136 aa12.46□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms