RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 MRPL23Q16540 153 aaKnown RBP14.47□□□□□ -0.09
TRIM28-201ENST00000253024 Q8NAQ8 132 aa14.47□□□□□ -0.09
TRIM28-201ENST00000253024 APOC4P55056 127 aa14.46□□□□□ -0.1
TRIM28-201ENST00000253024 COL6A5A8TX70 2615 aa14.45□□□□□ -0.1
TRIM28-201ENST00000253024 SMIM9A6NGZ8 99 aa14.45□□□□□ -0.1
TRIM28-201ENST00000253024 Q8N814 137 aa14.45□□□□□ -0.1
TRIM28-201ENST00000253024 SPART-AS1P0CW21 52 aa14.44□□□□□ -0.1
TRIM28-201ENST00000253024 C9orf153Q5TBE3 101 aa14.43□□□□□ -0.1
TRIM28-201ENST00000253024 WFDC10BQ8IUB3 73 aa14.43□□□□□ -0.1
TRIM28-201ENST00000253024 TMEM126AQ9H061 195 aa14.43□□□□□ -0.1
TRIM28-201ENST00000253024 ENHOQ6UWT2 76 aa14.41□□□□□ -0.1
TRIM28-201ENST00000253024 LAMTOR3Q9UHA4 124 aa14.4□□□□□ -0.1
TRIM28-201ENST00000253024 M0R2N4 97 aa14.4□□□□□ -0.1
TRIM28-201ENST00000253024 A0A1B0GX51 115 aa14.36□□□□□ -0.11
TRIM28-201ENST00000253024 CYSTM1Q9H1C7 97 aa14.36□□□□□ -0.11
TRIM28-201ENST00000253024 TRBV10-3A0A0K0K1G6 114 aa14.35□□□□□ -0.11
TRIM28-201ENST00000253024 Q6ZTC4 211 aa14.35□□□□□ -0.11
TRIM28-201ENST00000253024 FAM19A1Q7Z5A9 133 aa14.35□□□□□ -0.11
TRIM28-201ENST00000253024 PRB2P02812 416 aaPredicted RBP14.34□□□□□ -0.11
TRIM28-201ENST00000253024 LELP1Q5T871 98 aa14.34□□□□□ -0.11
TRIM28-201ENST00000253024 LYPD5Q6UWN5 251 aa14.34□□□□□ -0.11
TRIM28-201ENST00000253024 Q6ZQY7 126 aa14.34□□□□□ -0.11
TRIM28-201ENST00000253024 C6orf48Q9UBA6 75 aa14.34□□□□□ -0.11
TRIM28-201ENST00000253024 hADV29S1A0JD25 119 aa14.34□□□□□ -0.11
TRIM28-201ENST00000253024 MIFP14174 115 aa14.34□□□□□ -0.11
TRIM28-201ENST00000253024 PPDPFQ9H3Y8 114 aa14.34□□□□□ -0.11
TRIM28-201ENST00000253024 TRAV23DV6A0A075B6W5 121 aa14.33□□□□□ -0.12
TRIM28-201ENST00000253024 IMUPQ9GZP8 106 aa14.32□□□□□ -0.12
TRIM28-201ENST00000253024 KPRPQ5T749 579 aaPredicted RBP14.31□□□□□ -0.12
TRIM28-201ENST00000253024 LINC01561Q8N1V8 128 aa14.31□□□□□ -0.12
TRIM28-201ENST00000253024 CCKP06307 115 aa14.3□□□□□ -0.12
TRIM28-201ENST00000253024 C3orf22Q8N5N4 141 aa14.3□□□□□ -0.12
TRIM28-201ENST00000253024 OBSCN-AS1Q96MR7 158 aa14.3□□□□□ -0.12
TRIM28-201ENST00000253024 ZNF561-AS1K7EIQ3 104 aa14.3□□□□□ -0.12
TRIM28-201ENST00000253024 CAMK2N2Q96S95 79 aa14.3□□□□□ -0.12
TRIM28-201ENST00000253024 TMEM256-PLSCR3K7ERE1 68 aa14.29□□□□□ -0.12
TRIM28-201ENST00000253024 COX17Q14061 63 aa14.29□□□□□ -0.12
TRIM28-201ENST00000253024 LINC00575Q6W349 94 aa14.29□□□□□ -0.12
TRIM28-201ENST00000253024 CSMD3Q7Z407 3707 aa14.28□□□□□ -0.12
TRIM28-201ENST00000253024 SCXQ7RTU7 201 aa14.28□□□□□ -0.12
TRIM28-201ENST00000253024 NDUFC2O95298 119 aa14.27□□□□□ -0.12
TRIM28-201ENST00000253024 KRTAP10-11P60412 298 aa14.26□□□□□ -0.13
TRIM28-201ENST00000253024 HAMPP81172 84 aa14.26□□□□□ -0.13
TRIM28-201ENST00000253024 IGKV2D-24A0A075B6R9 120 aa14.25□□□□□ -0.13
TRIM28-201ENST00000253024 LOC107984640A0A0U1RRK4 108 aa14.25□□□□□ -0.13
TRIM28-201ENST00000253024 MGAM2Q2M2H8 2515 aa14.25□□□□□ -0.13
TRIM28-201ENST00000253024 USP17L23D6RBM5 183 aa14.25□□□□□ -0.13
TRIM28-201ENST00000253024 Q6ZRU5 148 aa14.25□□□□□ -0.13
TRIM28-201ENST00000253024 RBM3P98179 157 aaKnown RBP14.23□□□□□ -0.13
TRIM28-201ENST00000253024 UQCRQO14949 82 aa14.23□□□□□ -0.13
TRIM28-201ENST00000253024 Q6JHZ5 121 aa14.22□□□□□ -0.13
TRIM28-201ENST00000253024 PRR34Q9NV39 138 aa14.22□□□□□ -0.13
TRIM28-201ENST00000253024 JMJD7-PLA2G4BH0Y9G9 81 aa14.22□□□□□ -0.13
TRIM28-201ENST00000253024 COX7CP15954 63 aa14.22□□□□□ -0.13
TRIM28-201ENST00000253024 ESRGQ1W209 222 aa14.22□□□□□ -0.13
TRIM28-201ENST00000253024 C2orf48Q96LS8 159 aa14.21□□□□□ -0.13
TRIM28-201ENST00000253024 A0A0J9YWU9 116 aa14.21□□□□□ -0.14
TRIM28-201ENST00000253024 ATOX1O00244 68 aa14.19□□□□□ -0.14
TRIM28-201ENST00000253024 DEFB105AQ8NG35 78 aa14.19□□□□□ -0.14
TRIM28-201ENST00000253024 LINC00167Q96N53 147 aa14.18□□□□□ -0.14
TRIM28-201ENST00000253024 UBL5Q9BZL1 73 aa14.18□□□□□ -0.14
TRIM28-201ENST00000253024 ZNF73O43830 326 aaPredicted RBP14.17□□□□□ -0.14
TRIM28-201ENST00000253024 IGLV6-57P01721 117 aa14.17□□□□□ -0.14
TRIM28-201ENST00000253024 DIRC1Q969H9 104 aa14.17□□□□□ -0.14
TRIM28-201ENST00000253024 MRAPQ8TCY5 172 aa14.16□□□□□ -0.14
TRIM28-201ENST00000253024 GHRHP01286 108 aa14.15□□□□□ -0.14
TRIM28-201ENST00000253024 DSCR8Q96T75 97 aa14.15□□□□□ -0.14
TRIM28-201ENST00000253024 UPK3BQ9BT76 320 aa14.15□□□□□ -0.14
TRIM28-201ENST00000253024 Q6ZQT0 140 aa14.13□□□□□ -0.15
TRIM28-201ENST00000253024 C1orf43Q9BWL3 253 aa14.13□□□□□ -0.15
TRIM28-201ENST00000253024 Q6ZRP5 223 aa14.13□□□□□ -0.15
TRIM28-201ENST00000253024 C15orf56Q8N910 161 aa14.13□□□□□ -0.15
TRIM28-201ENST00000253024 COX7BP24311 80 aa14.12□□□□□ -0.15
TRIM28-201ENST00000253024 TENM2Q9NT68 2774 aa14.12□□□□□ -0.15
TRIM28-201ENST00000253024 DEFB131BA0A096LNP1 70 aa14.11□□□□□ -0.15
TRIM28-201ENST00000253024 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP14.11□□□□□ -0.15
TRIM28-201ENST00000253024 RPL37AP8A6NKH3 93 aa14.1□□□□□ -0.15
TRIM28-201ENST00000253024 Q8N9L7 120 aa14.1□□□□□ -0.15
TRIM28-201ENST00000253024 CASC10Q5T4H9 136 aa14.09□□□□□ -0.15
TRIM28-201ENST00000253024 VPREB1P12018 145 aa14.08□□□□□ -0.16
TRIM28-201ENST00000253024 SERP2Q8N6R1 65 aa14.08□□□□□ -0.16
TRIM28-201ENST00000253024 Q6ZVQ6 151 aa14.07□□□□□ -0.16
TRIM28-201ENST00000253024 STAB2Q8WWQ8 2551 aa14.07□□□□□ -0.16
TRIM28-201ENST00000253024 C20orf197Q8N268 126 aa14.07□□□□□ -0.16
TRIM28-201ENST00000253024 FAM168BA1KXE4 195 aa14.06□□□□□ -0.16
TRIM28-201ENST00000253024 LYSTQ99698 3801 aa14.05□□□□□ -0.16
TRIM28-201ENST00000253024 C11orf45Q8TAV5 145 aa14.05□□□□□ -0.16
TRIM28-201ENST00000253024 LINC01547P58512 204 aaPredicted RBP14.05□□□□□ -0.16
TRIM28-201ENST00000253024 SERTAD4-AS1Q5TG53 156 aa14.04□□□□□ -0.16
TRIM28-201ENST00000253024 KRTAP26-1Q6PEX3 210 aa14.04□□□□□ -0.16
TRIM28-201ENST00000253024 MUC7Q8TAX7 377 aa14.04□□□□□ -0.16
TRIM28-201ENST00000253024 KRTAP24-1Q3LI83 254 aa14.04□□□□□ -0.16
TRIM28-201ENST00000253024 TRAV10A0A0B4J240 114 aa14.04□□□□□ -0.16
TRIM28-201ENST00000253024 C3orf84H3BNL1 204 aa14.04□□□□□ -0.16
TRIM28-201ENST00000253024 NDUFC2-KCTD14E9PQ53 114 aa14.02□□□□□ -0.17
TRIM28-201ENST00000253024 FAM19A5Q7Z5A7 132 aaPredicted RBP14.02□□□□□ -0.17
TRIM28-201ENST00000253024 CRYGAP11844 174 aa14.01□□□□□ -0.17
TRIM28-201ENST00000253024 ELOF1P60002 83 aaKnown RBP14□□□□□ -0.17
TRIM28-201ENST00000253024 SYCNQ0VAF6 134 aa14□□□□□ -0.17
TRIM28-201ENST00000253024 SNURFQ9Y675 71 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms