RNA–Protein interactions for RNA: ENST00000228251.8

YBX3-201, Transcript of Y-box binding protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene YBX3, Length 1,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-201ENST00000228251 FAM240AA0A1B0GVK7 77 aa12.74□□□□□ -0.37
YBX3-201ENST00000228251 TMEM126AQ9H061 195 aa12.74□□□□□ -0.37
YBX3-201ENST00000228251 C15orf53Q8NAA6 179 aa12.72□□□□□ -0.37
YBX3-201ENST00000228251 LINC00167Q96N53 147 aa12.72□□□□□ -0.37
YBX3-201ENST00000228251 C2orf48Q96LS8 159 aa12.71□□□□□ -0.38
YBX3-201ENST00000228251 NCR3O14931 201 aa12.7□□□□□ -0.38
YBX3-201ENST00000228251 LECT2O14960 151 aa12.7□□□□□ -0.38
YBX3-201ENST00000228251 DNAH9Q9NYC9 4486 aa12.69□□□□□ -0.38
YBX3-201ENST00000228251 A0A1B0GX51 115 aa12.69□□□□□ -0.38
YBX3-201ENST00000228251 HIGD2BQ4VC39 106 aa12.69□□□□□ -0.38
YBX3-201ENST00000228251 IGLV6-57P01721 117 aa12.69□□□□□ -0.38
YBX3-201ENST00000228251 C1orf43Q9BWL3 253 aa12.69□□□□□ -0.38
YBX3-201ENST00000228251 ZNF561-AS1K7EIQ3 104 aa12.68□□□□□ -0.38
YBX3-201ENST00000228251 DNAL4O96015 105 aa12.68□□□□□ -0.38
YBX3-201ENST00000228251 OBSCN-AS1Q96MR7 158 aa12.68□□□□□ -0.38
YBX3-201ENST00000228251 LINC00588Q9Y4M8 146 aa12.68□□□□□ -0.38
YBX3-201ENST00000228251 MGAM2Q2M2H8 2515 aa12.67□□□□□ -0.38
YBX3-201ENST00000228251 Q6ZRU5 148 aa12.66□□□□□ -0.38
YBX3-201ENST00000228251 CAMK2N2Q96S95 79 aa12.66□□□□□ -0.38
YBX3-201ENST00000228251 MDFIQ99750 246 aa12.66□□□□□ -0.38
YBX3-201ENST00000228251 MRAPQ8TCY5 172 aa12.66□□□□□ -0.38
YBX3-201ENST00000228251 F8WDY8 70 aa12.65□□□□□ -0.38
YBX3-201ENST00000228251 C9orf129Q5T035 196 aaKnown RBP12.64□□□□□ -0.39
YBX3-201ENST00000228251 IGKV2D-24A0A075B6R9 120 aa12.64□□□□□ -0.39
YBX3-201ENST00000228251 C6orf99Q4VX62 202 aa12.64□□□□□ -0.39
YBX3-201ENST00000228251 Q8N814 137 aa12.64□□□□□ -0.39
YBX3-201ENST00000228251 S100A7L2Q5SY68 101 aa12.63□□□□□ -0.39
YBX3-201ENST00000228251 XAGE1AQ9HD64 81 aa12.63□□□□□ -0.39
YBX3-201ENST00000228251 ACYP1P07311 99 aa12.62□□□□□ -0.39
YBX3-201ENST00000228251 INAFM2P0DMQ5 153 aa12.62□□□□□ -0.39
YBX3-201ENST00000228251 RPL18AQ02543 176 aaKnown RBP12.62□□□□□ -0.39
YBX3-201ENST00000228251 DYNC2H1Q8NCM8 4307 aaKnown RBP12.62□□□□□ -0.39
YBX3-201ENST00000228251 COL7A1Q02388 2944 aa12.62□□□□□ -0.39
YBX3-201ENST00000228251 SLPIP03973 132 aa12.61□□□□□ -0.39
YBX3-201ENST00000228251 VPREB1P12018 145 aa12.61□□□□□ -0.39
YBX3-201ENST00000228251 SDIM1Q6ZPB5 146 aa12.61□□□□□ -0.39
YBX3-201ENST00000228251 NDUFC2-KCTD14E9PQ53 114 aa12.61□□□□□ -0.39
YBX3-201ENST00000228251 ORMDL1Q9P0S3 153 aa12.61□□□□□ -0.39
YBX3-201ENST00000228251 UPK3BQ9BT76 320 aa12.6□□□□□ -0.39
YBX3-201ENST00000228251 LINC00575Q6W349 94 aa12.59□□□□□ -0.39
YBX3-201ENST00000228251 TRBV10-3A0A0K0K1G6 114 aa12.58□□□□□ -0.4
YBX3-201ENST00000228251 SNCGO76070 127 aa12.56□□□□□ -0.4
YBX3-201ENST00000228251 SYCNQ0VAF6 134 aa12.56□□□□□ -0.4
YBX3-201ENST00000228251 Q6Q795 121 aa12.56□□□□□ -0.4
YBX3-201ENST00000228251 Q6ZRP5 223 aa12.56□□□□□ -0.4
YBX3-201ENST00000228251 STAB2Q8WWQ8 2551 aa12.55□□□□□ -0.4
YBX3-201ENST00000228251 SMCR5Q8TEV8 140 aa12.55□□□□□ -0.4
YBX3-201ENST00000228251 TRAV23DV6A0A075B6W5 121 aa12.53□□□□□ -0.4
YBX3-201ENST00000228251 TTC32Q5I0X7 151 aa12.53□□□□□ -0.4
YBX3-201ENST00000228251 CASC10Q5T4H9 136 aa12.53□□□□□ -0.4
YBX3-201ENST00000228251 C14orf132Q9NPU4 83 aa12.53□□□□□ -0.4
YBX3-201ENST00000228251 M0R378 163 aa12.52□□□□□ -0.41
YBX3-201ENST00000228251 TLX1NBP0CAT3 122 aa12.52□□□□□ -0.41
YBX3-201ENST00000228251 TMEM256-PLSCR3K7ERE1 68 aa12.51□□□□□ -0.41
YBX3-201ENST00000228251 TRBV7-6A0A0J9YX20 115 aa12.5□□□□□ -0.41
YBX3-201ENST00000228251 TRBV7-7A0A0K0K1E9 115 aa12.5□□□□□ -0.41
YBX3-201ENST00000228251 hADV29S1A0JD25 119 aa12.5□□□□□ -0.41
YBX3-201ENST00000228251 DIRC1Q969H9 104 aa12.5□□□□□ -0.41
YBX3-201ENST00000228251 USP17L23D6RBM5 183 aa12.49□□□□□ -0.41
YBX3-201ENST00000228251 ZNF73O43830 326 aaPredicted RBP12.49□□□□□ -0.41
YBX3-201ENST00000228251 GAGE2BQ13066 116 aa12.49□□□□□ -0.41
YBX3-201ENST00000228251 GAGE2EQ4V326 116 aa12.49□□□□□ -0.41
YBX3-201ENST00000228251 GAGE2DQ9UEU5 116 aa12.49□□□□□ -0.41
YBX3-201ENST00000228251 GAGE2AQ6NT46 116 aa12.48□□□□□ -0.41
YBX3-201ENST00000228251 ELOF1P60002 83 aaKnown RBP12.47□□□□□ -0.41
YBX3-201ENST00000228251 LINC00643Q86TS7 51 aa12.47□□□□□ -0.41
YBX3-201ENST00000228251 RMI2Q96E14 147 aa12.47□□□□□ -0.41
YBX3-201ENST00000228251 JMJD7-PLA2G4BH0Y9G9 81 aa12.46□□□□□ -0.41
YBX3-201ENST00000228251 B9D2Q9BPU9 175 aa12.46□□□□□ -0.41
YBX3-201ENST00000228251 PLA2G2DQ9UNK4 145 aa12.46□□□□□ -0.42
YBX3-201ENST00000228251 COX7BP24311 80 aa12.43□□□□□ -0.42
YBX3-201ENST00000228251 KRTAP1-5Q9BYS1 174 aa12.43□□□□□ -0.42
YBX3-201ENST00000228251 DNAH10Q8IVF4 4471 aa12.43□□□□□ -0.42
YBX3-201ENST00000228251 CCKP06307 115 aa12.43□□□□□ -0.42
YBX3-201ENST00000228251 SERTAD4-AS1Q5TG53 156 aa12.43□□□□□ -0.42
YBX3-201ENST00000228251 APLNQ9ULZ1 77 aa12.43□□□□□ -0.42
YBX3-201ENST00000228251 Q6ZQY7 126 aa12.42□□□□□ -0.42
YBX3-201ENST00000228251 LYSTQ99698 3801 aa12.42□□□□□ -0.42
YBX3-201ENST00000228251 LINC00528Q8N1L1 170 aa12.41□□□□□ -0.42
YBX3-201ENST00000228251 IMUPQ9GZP8 106 aa12.41□□□□□ -0.42
YBX3-201ENST00000228251 IGLV5-37A0A075B6J1 123 aa12.41□□□□□ -0.42
YBX3-201ENST00000228251 A0A1B0GV72 72 aa12.4□□□□□ -0.42
YBX3-201ENST00000228251 H3BQ85 93 aa12.4□□□□□ -0.42
YBX3-201ENST00000228251 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.4□□□□□ -0.42
YBX3-201ENST00000228251 KCNQ1DNQ9H478 68 aa12.4□□□□□ -0.42
YBX3-201ENST00000228251 LINC00846Q9NV44 126 aa12.4□□□□□ -0.42
YBX3-201ENST00000228251 CSMD3Q7Z407 3707 aa12.39□□□□□ -0.43
YBX3-201ENST00000228251 NHLRC4P0CG21 123 aaPredicted RBP12.38□□□□□ -0.43
YBX3-201ENST00000228251 C7orf33Q8WU49 177 aa12.38□□□□□ -0.43
YBX3-201ENST00000228251 NDUFV3P56181 108 aaKnown RBP12.38□□□□□ -0.43
YBX3-201ENST00000228251 KRTAP7-1Q8IUC3 87 aa12.38□□□□□ -0.43
YBX3-201ENST00000228251 PLECQ15149 4684 aaKnown RBP12.38□□□□□ -0.43
YBX3-201ENST00000228251 LOC110117498A0A087WWA1 95 aa12.35□□□□□ -0.43
YBX3-201ENST00000228251 KRTAP21-3Q3LHN1 58 aa12.35□□□□□ -0.43
YBX3-201ENST00000228251 NKAPP1Q8N9T2 125 aa12.35□□□□□ -0.43
YBX3-201ENST00000228251 Q6ZQT0 140 aa12.34□□□□□ -0.43
YBX3-201ENST00000228251 FAM168BA1KXE4 195 aa12.33□□□□□ -0.44
YBX3-201ENST00000228251 KRTAP4-16G5E9R7 235 aaPredicted RBP12.32□□□□□ -0.44
YBX3-201ENST00000228251 RBM3P98179 157 aaKnown RBP12.32□□□□□ -0.44
YBX3-201ENST00000228251 Q6JHZ5 121 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms