RNA–Protein interactions for RNA: ENST00000217402.2

CHMP4B-201, Transcript of charged multivesicular body protein 4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4B, Length 1,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4B-201ENST00000217402 XGP55808 180 aa17.21■□□□□ 0.35
CHMP4B-201ENST00000217402 SERTAD4-AS1Q5TG53 156 aa17.21■□□□□ 0.35
CHMP4B-201ENST00000217402 C12orf57Q99622 126 aa17.21■□□□□ 0.35
CHMP4B-201ENST00000217402 PLAC8Q9NZF1 115 aa17.21■□□□□ 0.35
CHMP4B-201ENST00000217402 MIEN1Q9BRT3 115 aa17.2■□□□□ 0.34
CHMP4B-201ENST00000217402 KRTAP7-1Q8IUC3 87 aa17.19■□□□□ 0.34
CHMP4B-201ENST00000217402 EIF4EBP3O60516 100 aaPredicted RBP17.18■□□□□ 0.34
CHMP4B-201ENST00000217402 SOSTDC1Q6X4U4 206 aa17.18■□□□□ 0.34
CHMP4B-201ENST00000217402 SPANXDQ9BXN6 97 aa17.18■□□□□ 0.34
CHMP4B-201ENST00000217402 SPANXCQ9NY87 97 aa17.18■□□□□ 0.34
CHMP4B-201ENST00000217402 Q8NDZ9 215 aa17.18■□□□□ 0.34
CHMP4B-201ENST00000217402 APOBP04114 4563 aaKnown RBP17.17■□□□□ 0.34
CHMP4B-201ENST00000217402 LINC00308Q8TCZ7 52 aa17.17■□□□□ 0.34
CHMP4B-201ENST00000217402 CDK2AP2O75956 126 aa17.16■□□□□ 0.34
CHMP4B-201ENST00000217402 PRO1933Q9H354 126 aa17.16■□□□□ 0.34
CHMP4B-201ENST00000217402 C2orf91Q6ZV80 131 aa17.15■□□□□ 0.34
CHMP4B-201ENST00000217402 M0QXV9 152 aa17.14■□□□□ 0.33
CHMP4B-201ENST00000217402 SRSF9Q13242 221 aaKnown RBP eCLIP17.14■□□□□ 0.33
CHMP4B-201ENST00000217402 PLA2G2DQ9UNK4 145 aa17.14■□□□□ 0.33
CHMP4B-201ENST00000217402 SPANXB1Q9NS25 103 aaPredicted RBP17.14■□□□□ 0.33
CHMP4B-201ENST00000217402 LOC107984156A0A0G2JMH3 177 aa17.13■□□□□ 0.33
CHMP4B-201ENST00000217402 VPREB1P12018 145 aa17.13■□□□□ 0.33
CHMP4B-201ENST00000217402 ARL17AQ8IVW1 177 aa17.13■□□□□ 0.33
CHMP4B-201ENST00000217402 UQCR10Q9UDW1 63 aa17.13■□□□□ 0.33
CHMP4B-201ENST00000217402 RPL24P83731 157 aaKnown RBP17.12■□□□□ 0.33
CHMP4B-201ENST00000217402 Q6ZVH6 145 aa17.12■□□□□ 0.33
CHMP4B-201ENST00000217402 PHF5AQ7RTV0 110 aaKnown RBP17.12■□□□□ 0.33
CHMP4B-201ENST00000217402 NKAPP1Q8N9T2 125 aa17.12■□□□□ 0.33
CHMP4B-201ENST00000217402 EPM2AB3EWF7 344 aa17.11■□□□□ 0.33
CHMP4B-201ENST00000217402 C22orf24Q9Y442 160 aa17.11■□□□□ 0.33
CHMP4B-201ENST00000217402 LINC00518Q8N0U6 118 aa17.1■□□□□ 0.33
CHMP4B-201ENST00000217402 HIGD1BQ9P298 99 aa17.1■□□□□ 0.33
CHMP4B-201ENST00000217402 PRR3P79522 188 aaKnown RBP17.1■□□□□ 0.33
CHMP4B-201ENST00000217402 MUSTN1Q8IVN3 82 aa17.1■□□□□ 0.33
CHMP4B-201ENST00000217402 HIST1H4GQ99525 98 aa17.1■□□□□ 0.33
CHMP4B-201ENST00000217402 BIRC6Q9NR09 4857 aa17.1■□□□□ 0.33
CHMP4B-201ENST00000217402 IGLV5-37A0A075B6J1 123 aa17.08■□□□□ 0.32
CHMP4B-201ENST00000217402 NCR3O14931 201 aa17.08■□□□□ 0.32
CHMP4B-201ENST00000217402 IFITM1P13164 125 aa17.08■□□□□ 0.32
CHMP4B-201ENST00000217402 SMR3BP02814 79 aaPredicted RBP17.07■□□□□ 0.32
CHMP4B-201ENST00000217402 COPS9Q8WXC6 57 aa17.07■□□□□ 0.32
CHMP4B-201ENST00000217402 GAGE10A6NGK3 116 aa17.07■□□□□ 0.32
CHMP4B-201ENST00000217402 MRPL55Q7Z7F7 128 aaKnown RBP17.07■□□□□ 0.32
CHMP4B-201ENST00000217402 KIAA1109Q2LD37 5005 aa17.04■□□□□ 0.32
CHMP4B-201ENST00000217402 C7orf33Q8WU49 177 aa17.03■□□□□ 0.32
CHMP4B-201ENST00000217402 NDUFC2O95298 119 aa17.03■□□□□ 0.32
CHMP4B-201ENST00000217402 HNRNPA3P51991 378 aaKnown RBP17.02■□□□□ 0.31
CHMP4B-201ENST00000217402 UBE2BP63146 152 aa17.02■□□□□ 0.31
CHMP4B-201ENST00000217402 LBHQ53QV2 105 aaPredicted RBP17.02■□□□□ 0.31
CHMP4B-201ENST00000217402 LINC00167Q96N53 147 aa17.02■□□□□ 0.31
CHMP4B-201ENST00000217402 RYR1P21817 5038 aa17.01■□□□□ 0.31
CHMP4B-201ENST00000217402 PPDPFQ9H3Y8 114 aa17■□□□□ 0.31
CHMP4B-201ENST00000217402 RPL37AP8A6NKH3 93 aa16.99■□□□□ 0.31
CHMP4B-201ENST00000217402 TSTD3H0UI37 97 aa16.99■□□□□ 0.31
CHMP4B-201ENST00000217402 M0R378 163 aa16.99■□□□□ 0.31
CHMP4B-201ENST00000217402 LINC00528Q8N1L1 170 aa16.99■□□□□ 0.31
CHMP4B-201ENST00000217402 HSPG2P98160 4391 aa16.98■□□□□ 0.31
CHMP4B-201ENST00000217402 KRTAP11-1Q8IUC1 163 aa16.98■□□□□ 0.31
CHMP4B-201ENST00000217402 IGKV2-28A0A075B6P5 120 aa16.97■□□□□ 0.31
CHMP4B-201ENST00000217402 IGKV2D-28P01615 120 aa16.97■□□□□ 0.31
CHMP4B-201ENST00000217402 A4D1N5 150 aa16.96■□□□□ 0.3
CHMP4B-201ENST00000217402 TAL2Q16559 108 aa16.96■□□□□ 0.3
CHMP4B-201ENST00000217402 TRBV10-2A0A0K0K1G8 114 aa16.95■□□□□ 0.3
CHMP4B-201ENST00000217402 HSD52Q0P140 79 aa16.94■□□□□ 0.3
CHMP4B-201ENST00000217402 CEND1Q8N111 149 aa16.93■□□□□ 0.3
CHMP4B-201ENST00000217402 TRBV10-3A0A0K0K1G6 114 aa16.92■□□□□ 0.3
CHMP4B-201ENST00000217402 S100A7L2Q5SY68 101 aa16.92■□□□□ 0.3
CHMP4B-201ENST00000217402 IGLV1-50A0A075B6I6 118 aa16.91■□□□□ 0.3
CHMP4B-201ENST00000217402 LINC00337Q8N6G1 96 aa16.91■□□□□ 0.3
CHMP4B-201ENST00000217402 DDTP30046 118 aa16.9■□□□□ 0.3
CHMP4B-201ENST00000217402 OR13C6PQ8NH95 151 aa16.9■□□□□ 0.3
CHMP4B-201ENST00000217402 PSORS1C2Q9UIG4 136 aa16.89■□□□□ 0.29
CHMP4B-201ENST00000217402 RPL37AP61513 92 aaKnown RBP16.88■□□□□ 0.29
CHMP4B-201ENST00000217402 FXYD2P54710 66 aa16.87■□□□□ 0.29
CHMP4B-201ENST00000217402 KRTAP17-1Q9BYP8 105 aa16.87■□□□□ 0.29
CHMP4B-201ENST00000217402 IGLV6-57P01721 117 aa16.86■□□□□ 0.29
CHMP4B-201ENST00000217402 CTAG1AP78358 180 aa16.86■□□□□ 0.29
CHMP4B-201ENST00000217402 FAM229AH3BQW9 127 aa16.85■□□□□ 0.29
CHMP4B-201ENST00000217402 A6NDN8 102 aa16.85■□□□□ 0.29
CHMP4B-201ENST00000217402 Q5VSD8 79 aa16.84■□□□□ 0.29
CHMP4B-201ENST00000217402 FAT1Q14517 4588 aa16.83■□□□□ 0.29
CHMP4B-201ENST00000217402 C1orf137Q5JT78 98 aa16.83■□□□□ 0.28
CHMP4B-201ENST00000217402 Q8N1X5 172 aa16.83■□□□□ 0.28
CHMP4B-201ENST00000217402 TMEM238LA0A1B0GVL6 79 aa16.82■□□□□ 0.28
CHMP4B-201ENST00000217402 A6NJY4 79 aa16.82■□□□□ 0.28
CHMP4B-201ENST00000217402 TMEM126AQ9H061 195 aa16.82■□□□□ 0.28
CHMP4B-201ENST00000217402 TRAV13-2A0A0B4J235 113 aa16.81■□□□□ 0.28
CHMP4B-201ENST00000217402 REG3GQ6UW15 175 aa16.81■□□□□ 0.28
CHMP4B-201ENST00000217402 KCNQ1DNQ9H478 68 aa16.81■□□□□ 0.28
CHMP4B-201ENST00000217402 PRYO14603 147 aa16.8■□□□□ 0.28
CHMP4B-201ENST00000217402 CFC1BP0CG36 223 aa16.8■□□□□ 0.28
CHMP4B-201ENST00000217402 CFC1P0CG37 223 aa16.8■□□□□ 0.28
CHMP4B-201ENST00000217402 TRAV23DV6A0A075B6W5 121 aa16.79■□□□□ 0.28
CHMP4B-201ENST00000217402 PLA2G1BP04054 148 aaKnown RBP16.78■□□□□ 0.28
CHMP4B-201ENST00000217402 VPS13BQ7Z7G8 4022 aa16.78■□□□□ 0.28
CHMP4B-201ENST00000217402 HINT1P49773 126 aaPredicted RBP16.78■□□□□ 0.28
CHMP4B-201ENST00000217402 RAB37Q96AX2 223 aa16.78■□□□□ 0.28
CHMP4B-201ENST00000217402 BVES-AS1Q5T3Y7 98 aa16.76■□□□□ 0.27
CHMP4B-201ENST00000217402 NHP2Q9NX24 153 aaKnown RBP16.76■□□□□ 0.27
CHMP4B-201ENST00000217402 A0A0B4J2C4 111 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms