RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 TET3O43151 1660 aa-0.51□□□□□ -2.49
VPS35-212ENST00000640313 ADGRL2O95490 1459 aa-0.51□□□□□ -2.49
VPS35-212ENST00000640313 IFNGP01579 166 aa-0.51□□□□□ -2.49
VPS35-212ENST00000640313 MYH6P13533 1939 aa-0.51□□□□□ -2.49
VPS35-212ENST00000640313 CFTRP13569 1480 aa-0.51□□□□□ -2.49
VPS35-212ENST00000640313 NKTRP30414 1462 aaKnown RBP-0.51□□□□□ -2.49
VPS35-212ENST00000640313 ADAMTS12P58397 1594 aa-0.51□□□□□ -2.49
VPS35-212ENST00000640313 DR1Q01658 176 aa-0.51□□□□□ -2.49
VPS35-212ENST00000640313 SMCO1Q147U7 214 aa-0.51□□□□□ -2.49
VPS35-212ENST00000640313 MYOM3Q5VTT5 1437 aa-0.51□□□□□ -2.49
VPS35-212ENST00000640313 C12orf73Q69YU5 71 aa-0.51□□□□□ -2.49
VPS35-212ENST00000640313 C5orf38Q86SI9 138 aa-0.51□□□□□ -2.49
VPS35-212ENST00000640313 FAM223AQ8IWN6 122 aa-0.51□□□□□ -2.49
VPS35-212ENST00000640313 TSTD1Q8NFU3 115 aa-0.51□□□□□ -2.49
VPS35-212ENST00000640313 FAM167A-AS1Q96KT0 104 aa-0.51□□□□□ -2.49
VPS35-212ENST00000640313 SELENOSQ9BQE4 189 aa-0.51□□□□□ -2.49
VPS35-212ENST00000640313 SNRNP25Q9BV90 132 aaKnown RBP-0.51□□□□□ -2.49
VPS35-212ENST00000640313 PTPN23Q9H3S7 1636 aa-0.51□□□□□ -2.49
VPS35-212ENST00000640313 TPT1P8Q9HAU6 139 aa-0.51□□□□□ -2.49
VPS35-212ENST00000640313 LINC00846Q9NV44 126 aa-0.51□□□□□ -2.49
VPS35-212ENST00000640313 CCDC167Q9P0B6 97 aa-0.51□□□□□ -2.49
VPS35-212ENST00000640313 SETBP1Q9Y6X0 1596 aa-0.51□□□□□ -2.49
VPS35-212ENST00000640313 RIF1Q5UIP0 2472 aaKnown RBP-0.52□□□□□ -2.49
VPS35-212ENST00000640313 SBF2Q86WG5 1849 aa-0.52□□□□□ -2.49
VPS35-212ENST00000640313 CSMD1Q96PZ7 3565 aa-0.52□□□□□ -2.49
VPS35-212ENST00000640313 ARAP2Q8WZ64 1704 aa-0.52□□□□□ -2.49
VPS35-212ENST00000640313 KDM5AP29375 1690 aaKnown RBP-0.52□□□□□ -2.49
VPS35-212ENST00000640313 SLIT1O75093 1534 aa-0.52□□□□□ -2.49
VPS35-212ENST00000640313 C1orf167Q5SNV9 1468 aa-0.52□□□□□ -2.49
VPS35-212ENST00000640313 LRBAP50851 2863 aa-0.52□□□□□ -2.49
VPS35-212ENST00000640313 CPSF1Q10570 1443 aaKnown RBP-0.52□□□□□ -2.49
VPS35-212ENST00000640313 CEP295Q9C0D2 2601 aa-0.52□□□□□ -2.49
VPS35-212ENST00000640313 LOC105371267A0A1B0GV96 52 aa-0.52□□□□□ -2.49
VPS35-212ENST00000640313 UBE2D3P61077 147 aa-0.52□□□□□ -2.49
VPS35-212ENST00000640313 UBE2D2P62837 147 aa-0.52□□□□□ -2.49
VPS35-212ENST00000640313 UBA52P62987 128 aaKnown RBP-0.52□□□□□ -2.49
VPS35-212ENST00000640313 BTG2P78543 158 aa-0.52□□□□□ -2.49
VPS35-212ENST00000640313 MT1HP80294 61 aa-0.52□□□□□ -2.49
VPS35-212ENST00000640313 SMIM21Q3B7S5 101 aa-0.52□□□□□ -2.49
VPS35-212ENST00000640313 Q56UQ5 140 aa-0.52□□□□□ -2.49
VPS35-212ENST00000640313 MEIG1Q5JSS6 88 aa-0.52□□□□□ -2.49
VPS35-212ENST00000640313 COMMD6Q7Z4G1 85 aa-0.52□□□□□ -2.49
VPS35-212ENST00000640313 PYDC1Q8WXC3 89 aa-0.52□□□□□ -2.49
VPS35-212ENST00000640313 ANP32BQ92688 251 aaKnown RBP-0.52□□□□□ -2.49
VPS35-212ENST00000640313 PPP3R2Q96LZ3 170 aa-0.52□□□□□ -2.49
VPS35-212ENST00000640313 PDCD10Q9BUL8 212 aa-0.52□□□□□ -2.49
VPS35-212ENST00000640313 ARL2-SNX15V9GYD0 113 aa-0.52□□□□□ -2.49
VPS35-212ENST00000640313 PAPPA2Q9BXP8 1791 aa-0.52□□□□□ -2.49
VPS35-212ENST00000640313 COL4A6Q14031 1691 aa-0.53□□□□□ -2.49
VPS35-212ENST00000640313 RANBP2P49792 3224 aaKnown RBP-0.53□□□□□ -2.49
VPS35-212ENST00000640313 ARHGEF5Q12774 1597 aa-0.53□□□□□ -2.49
VPS35-212ENST00000640313 GRIN2AQ12879 1464 aa-0.53□□□□□ -2.49
VPS35-212ENST00000640313 PLEKHH2Q8IVE3 1493 aa-0.53□□□□□ -2.49
VPS35-212ENST00000640313 SMG6Q86US8 1419 aaKnown RBP-0.53□□□□□ -2.49
VPS35-212ENST00000640313 NCOA3Q9Y6Q9 1424 aa-0.53□□□□□ -2.49
VPS35-212ENST00000640313 PIGBOS1A0A0B4J2F0 54 aa-0.53□□□□□ -2.49
VPS35-212ENST00000640313 FAM223BA6NKX1 122 aa-0.53□□□□□ -2.49
VPS35-212ENST00000640313 OOSP1A8MZH6 123 aa-0.53□□□□□ -2.49
VPS35-212ENST00000640313 H3BNG1 76 aa-0.53□□□□□ -2.49
VPS35-212ENST00000640313 SSSCA1O60232 199 aa-0.53□□□□□ -2.49
VPS35-212ENST00000640313 ARPC4P59998 168 aa-0.53□□□□□ -2.49
VPS35-212ENST00000640313 WHAMMP3Q1A5X7 153 aa-0.53□□□□□ -2.49
VPS35-212ENST00000640313 AKAP14Q86UN6 197 aa-0.53□□□□□ -2.49
VPS35-212ENST00000640313 WFDC13Q8IUB5 93 aa-0.53□□□□□ -2.49
VPS35-212ENST00000640313 FDCSPQ8NFU4 85 aa-0.53□□□□□ -2.49
VPS35-212ENST00000640313 MRPL34Q9BQ48 92 aaKnown RBP-0.53□□□□□ -2.49
VPS35-212ENST00000640313 LINC00470Q9BZP3 86 aa-0.53□□□□□ -2.49
VPS35-212ENST00000640313 PRO1933Q9H354 126 aa-0.53□□□□□ -2.49
VPS35-212ENST00000640313 DPH3P1Q9H4G8 78 aa-0.53□□□□□ -2.49
VPS35-212ENST00000640313 FAIMQ9NVQ4 179 aa-0.53□□□□□ -2.49
VPS35-212ENST00000640313 COPZ2Q9P299 210 aa-0.53□□□□□ -2.49
VPS35-212ENST00000640313 PATJQ8NI35 1801 aa-0.53□□□□□ -2.49
VPS35-212ENST00000640313 FMN2Q9NZ56 1722 aa-0.53□□□□□ -2.49
VPS35-212ENST00000640313 NWD2Q9ULI1 1742 aa-0.53□□□□□ -2.49
VPS35-212ENST00000640313 MYOM1P52179 1685 aa-0.53□□□□□ -2.49
VPS35-212ENST00000640313 ITPR1Q14643 2758 aa-0.54□□□□□ -2.5
VPS35-212ENST00000640313 A0A1B0GU69 56 aa-0.54□□□□□ -2.5
VPS35-212ENST00000640313 I3L3M4 83 aa-0.54□□□□□ -2.5
VPS35-212ENST00000640313 SELENOWP63302 87 aa-0.54□□□□□ -2.5
VPS35-212ENST00000640313 SEC11AP67812 179 aa-0.54□□□□□ -2.5
VPS35-212ENST00000640313 CATR1Q13166 79 aa-0.54□□□□□ -2.5
VPS35-212ENST00000640313 KRTAP19-5Q3LI72 72 aa-0.54□□□□□ -2.5
VPS35-212ENST00000640313 SFTA2Q6UW10 78 aa-0.54□□□□□ -2.5
VPS35-212ENST00000640313 C8orf59Q8N0T1 100 aaPredicted RBP-0.54□□□□□ -2.5
VPS35-212ENST00000640313 ZNF436-AS1Q8NC38 126 aaPredicted RBP-0.54□□□□□ -2.5
VPS35-212ENST00000640313 COPS9Q8WXC6 57 aa-0.54□□□□□ -2.5
VPS35-212ENST00000640313 HIGD1BQ9P298 99 aa-0.54□□□□□ -2.5
VPS35-212ENST00000640313 ACACBO00763 2458 aa-0.54□□□□□ -2.5
VPS35-212ENST00000640313 CICQ96RK0 1608 aaPredicted RBP-0.54□□□□□ -2.5
VPS35-212ENST00000640313 NLRP1Q9C000 1473 aa-0.54□□□□□ -2.5
VPS35-212ENST00000640313 MBD5Q9P267 1494 aa-0.54□□□□□ -2.5
VPS35-212ENST00000640313 MRC2Q9UBG0 1479 aa-0.54□□□□□ -2.5
VPS35-212ENST00000640313 SPENQ96T58 3664 aaKnown RBP-0.54□□□□□ -2.5
VPS35-212ENST00000640313 BTAF1O14981 1849 aa-0.54□□□□□ -2.5
VPS35-212ENST00000640313 SMG1Q96Q15 3661 aaKnown RBP-0.55□□□□□ -2.5
VPS35-212ENST00000640313 MYH8P13535 1937 aa-0.55□□□□□ -2.5
VPS35-212ENST00000640313 A0A087WVE0 104 aa-0.55□□□□□ -2.5
VPS35-212ENST00000640313 A0A1B0GWA3 101 aa-0.55□□□□□ -2.5
VPS35-212ENST00000640313 C9orf92A6NGG3 77 aa-0.55□□□□□ -2.5
VPS35-212ENST00000640313 MIF4GDA9UHW6 222 aaKnown RBP-0.55□□□□□ -2.5
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms