RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 GAGE2EQ4V326 116 aa9.8□□□□□ -0.84
CLN3-264ENST00000637985 C1orf137Q5JT78 98 aa9.8□□□□□ -0.84
CLN3-264ENST00000637985 C2orf82Q6UX34 121 aa9.8□□□□□ -0.84
CLN3-264ENST00000637985 TOMM6Q96B49 74 aa9.8□□□□□ -0.84
CLN3-264ENST00000637985 GNB1LQ9BYB4 327 aa9.8□□□□□ -0.84
CLN3-264ENST00000637985 GAGE2DQ9UEU5 116 aa9.8□□□□□ -0.84
CLN3-264ENST00000637985 MUC17Q685J3 4493 aa9.79□□□□□ -0.84
CLN3-264ENST00000637985 FAM168BA1KXE4 195 aa9.79□□□□□ -0.84
CLN3-264ENST00000637985 NDUFC2-KCTD14E9PQ53 114 aa9.79□□□□□ -0.84
CLN3-264ENST00000637985 LINC01549A6NIU2 74 aa9.78□□□□□ -0.84
CLN3-264ENST00000637985 COX19Q49B96 90 aa9.78□□□□□ -0.84
CLN3-264ENST00000637985 C6orf226Q5I0X4 101 aa9.78□□□□□ -0.84
CLN3-264ENST00000637985 ERASQ7Z444 233 aa9.78□□□□□ -0.84
CLN3-264ENST00000637985 FAM19A5Q7Z5A7 132 aaPredicted RBP9.78□□□□□ -0.84
CLN3-264ENST00000637985 Q8IZM0 81 aa9.78□□□□□ -0.84
CLN3-264ENST00000637985 CKS1BP61024 79 aa9.77□□□□□ -0.85
CLN3-264ENST00000637985 GEMIN7Q9H840 131 aaKnown RBP9.77□□□□□ -0.85
CLN3-264ENST00000637985 LINC01546A6NGU7 62 aa9.76□□□□□ -0.85
CLN3-264ENST00000637985 H0Y9J4 135 aa9.76□□□□□ -0.85
CLN3-264ENST00000637985 IGLV7-43P04211 117 aa9.76□□□□□ -0.85
CLN3-264ENST00000637985 KRTAP1-4P0C5Y4 121 aa9.76□□□□□ -0.85
CLN3-264ENST00000637985 SCGB3A1Q96QR1 104 aa9.76□□□□□ -0.85
CLN3-264ENST00000637985 ALKBH7Q9BT30 221 aaPredicted RBP9.76□□□□□ -0.85
CLN3-264ENST00000637985 TOMM7Q9P0U1 55 aa9.76□□□□□ -0.85
CLN3-264ENST00000637985 CDKN2A-AS1Q9UH64 79 aa9.76□□□□□ -0.85
CLN3-264ENST00000637985 KRTAP7-1Q8IUC3 87 aa9.75□□□□□ -0.85
CLN3-264ENST00000637985 M0QXV9 152 aa9.74□□□□□ -0.85
CLN3-264ENST00000637985 C9orf129Q5T035 196 aaKnown RBP9.74□□□□□ -0.85
CLN3-264ENST00000637985 C10orf91Q5T1B1 145 aa9.74□□□□□ -0.85
CLN3-264ENST00000637985 COMMD7Q86VX2 200 aa9.74□□□□□ -0.85
CLN3-264ENST00000637985 KRTAP11-1Q8IUC1 163 aa9.73□□□□□ -0.85
CLN3-264ENST00000637985 TINCRA0A1B0GVN0 87 aa9.72□□□□□ -0.85
CLN3-264ENST00000637985 F8VRH5 84 aa9.72□□□□□ -0.85
CLN3-264ENST00000637985 CXCL5P42830 114 aa9.72□□□□□ -0.85
CLN3-264ENST00000637985 UBE2BP63146 152 aa9.72□□□□□ -0.85
CLN3-264ENST00000637985 RHEBQ15382 184 aa9.72□□□□□ -0.85
CLN3-264ENST00000637985 RPL13AP40429 203 aaKnown RBP9.71□□□□□ -0.86
CLN3-264ENST00000637985 FABP9Q0Z7S8 132 aa9.71□□□□□ -0.86
CLN3-264ENST00000637985 LINC00469Q8N7U9 141 aa9.71□□□□□ -0.86
CLN3-264ENST00000637985 MRPL18Q9H0U6 180 aaKnown RBP9.71□□□□□ -0.86
CLN3-264ENST00000637985 CARHSP1Q9Y2V2 147 aaKnown RBP9.71□□□□□ -0.86
CLN3-264ENST00000637985 IGLV5-45A0A087WSX0 123 aa9.7□□□□□ -0.86
CLN3-264ENST00000637985 PDZD11Q5EBL8 140 aa9.7□□□□□ -0.86
CLN3-264ENST00000637985 FA2HQ7L5A8 372 aa9.7□□□□□ -0.86
CLN3-264ENST00000637985 CST9LQ9H4G1 147 aa9.7□□□□□ -0.86
CLN3-264ENST00000637985 RPS10P5Q9NQ39 176 aa9.7□□□□□ -0.86
CLN3-264ENST00000637985 SMCO4Q9NRQ5 59 aa9.7□□□□□ -0.86
CLN3-264ENST00000637985 SMIM1B2RUZ4 78 aa9.69□□□□□ -0.86
CLN3-264ENST00000637985 PMVKQ15126 192 aa9.68□□□□□ -0.86
CLN3-264ENST00000637985 TSPAN13O95857 204 aa9.67□□□□□ -0.86
CLN3-264ENST00000637985 LBHQ53QV2 105 aaPredicted RBP9.67□□□□□ -0.86
CLN3-264ENST00000637985 COX7B2Q8TF08 81 aa9.67□□□□□ -0.86
CLN3-264ENST00000637985 C22orf24Q9Y442 160 aa9.67□□□□□ -0.86
CLN3-264ENST00000637985 XAGE1AQ9HD64 81 aa9.66□□□□□ -0.86
CLN3-264ENST00000637985 TP73-AS1Q9UF72 201 aa9.65□□□□□ -0.86
CLN3-264ENST00000637985 H3BRM9 83 aa9.64□□□□□ -0.87
CLN3-264ENST00000637985 NUPR1O60356 82 aa9.64□□□□□ -0.87
CLN3-264ENST00000637985 TRAPPC1Q9Y5R8 145 aa9.64□□□□□ -0.87
CLN3-264ENST00000637985 SPINK8P0C7L1 97 aa9.62□□□□□ -0.87
CLN3-264ENST00000637985 LINC00614P0C842 121 aa9.62□□□□□ -0.87
CLN3-264ENST00000637985 C18orf32Q8TCD1 76 aa9.62□□□□□ -0.87
CLN3-264ENST00000637985 A0A096LNJ9 63 aa9.61□□□□□ -0.87
CLN3-264ENST00000637985 ZNF861PO60384 105 aa9.61□□□□□ -0.87
CLN3-264ENST00000637985 IGLC3P0DOY3 106 aa9.61□□□□□ -0.87
CLN3-264ENST00000637985 MRPL55Q7Z7F7 128 aaKnown RBP9.61□□□□□ -0.87
CLN3-264ENST00000637985 HBDP02042 147 aa9.6□□□□□ -0.87
CLN3-264ENST00000637985 URB1-AS1Q96HZ7 61 aa9.6□□□□□ -0.87
CLN3-264ENST00000637985 ATP5LO75964 103 aa9.59□□□□□ -0.87
CLN3-264ENST00000637985 SNAPINO95295 136 aa9.59□□□□□ -0.87
CLN3-264ENST00000637985 APOC3P02656 99 aa9.59□□□□□ -0.87
CLN3-264ENST00000637985 RAB5BP61020 215 aa9.59□□□□□ -0.87
CLN3-264ENST00000637985 NDUFA5Q16718 116 aa9.59□□□□□ -0.87
CLN3-264ENST00000637985 SVBPQ8N300 66 aa9.59□□□□□ -0.87
CLN3-264ENST00000637985 CDIP1Q9H305 208 aa9.59□□□□□ -0.87
CLN3-264ENST00000637985 IGLV5-39A0A0G2JS06 123 aa9.58□□□□□ -0.88
CLN3-264ENST00000637985 NDUFA6P56556 154 aa9.58□□□□□ -0.88
CLN3-264ENST00000637985 IGLV5-37A0A075B6J1 123 aa9.57□□□□□ -0.88
CLN3-264ENST00000637985 LINC01547P58512 204 aaPredicted RBP9.57□□□□□ -0.88
CLN3-264ENST00000637985 LINC00167Q96N53 147 aa9.57□□□□□ -0.88
CLN3-264ENST00000637985 BCE1O60756 84 aa9.56□□□□□ -0.88
CLN3-264ENST00000637985 ZNF22P17026 224 aaPredicted RBP9.56□□□□□ -0.88
CLN3-264ENST00000637985 TPRXLQ17RH7 258 aa9.56□□□□□ -0.88
CLN3-264ENST00000637985 RPL28P46779 137 aaKnown RBP9.55□□□□□ -0.88
CLN3-264ENST00000637985 PMCHL1Q16048 86 aa9.54□□□□□ -0.88
CLN3-264ENST00000637985 NKAPP1Q8N9T2 125 aa9.54□□□□□ -0.88
CLN3-264ENST00000637985 RPL37AP8A6NKH3 93 aa9.53□□□□□ -0.88
CLN3-264ENST00000637985 COX17Q14061 63 aa9.53□□□□□ -0.88
CLN3-264ENST00000637985 SFTA2Q6UW10 78 aa9.53□□□□□ -0.88
CLN3-264ENST00000637985 BAGE3Q86Y29 109 aa9.53□□□□□ -0.88
CLN3-264ENST00000637985 PFN2P35080 140 aa9.52□□□□□ -0.89
CLN3-264ENST00000637985 GAGE10A6NGK3 116 aa9.51□□□□□ -0.89
CLN3-264ENST00000637985 C11orf86A6NJI1 115 aa9.51□□□□□ -0.89
CLN3-264ENST00000637985 YPEL4Q96NS1 127 aa9.51□□□□□ -0.89
CLN3-264ENST00000637985 RETNLBQ9BQ08 111 aa9.51□□□□□ -0.89
CLN3-264ENST00000637985 ERG28Q9UKR5 140 aa9.51□□□□□ -0.89
CLN3-264ENST00000637985 A0A087X002 238 aa9.5□□□□□ -0.89
CLN3-264ENST00000637985 TMEM170BQ5T4T1 132 aa9.5□□□□□ -0.89
CLN3-264ENST00000637985 CHCHD1Q96BP2 118 aaKnown RBP9.5□□□□□ -0.89
CLN3-264ENST00000637985 SND1-IT1Q9HBX3 110 aa9.49□□□□□ -0.89
CLN3-264ENST00000637985 CHTOPQ9Y3Y2 248 aaKnown RBP9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 126 ms