RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 ZNF561-AS1K7EIQ3 104 aa12.17□□□□□ -0.46
CLN3-260ENST00000637578 ORAOV1Q8WV07 137 aa12.17□□□□□ -0.46
CLN3-260ENST00000637578 H0Y8G0 127 aa12.16□□□□□ -0.46
CLN3-260ENST00000637578 SPAG11BQ08648 103 aa12.16□□□□□ -0.46
CLN3-260ENST00000637578 LINC01561Q8N1V8 128 aa12.16□□□□□ -0.46
CLN3-260ENST00000637578 OR10D4PQ8NGN7 298 aa12.16□□□□□ -0.46
CLN3-260ENST00000637578 CARD19Q96LW7 228 aa12.16□□□□□ -0.46
CLN3-260ENST00000637578 CHTOPQ9Y3Y2 248 aaKnown RBP12.16□□□□□ -0.46
CLN3-260ENST00000637578 SYCNQ0VAF6 134 aa12.15□□□□□ -0.46
CLN3-260ENST00000637578 A0A096LNI7 61 aa12.14□□□□□ -0.47
CLN3-260ENST00000637578 C11orf86A6NJI1 115 aa12.14□□□□□ -0.47
CLN3-260ENST00000637578 PKIGQ9Y2B9 76 aa12.14□□□□□ -0.47
CLN3-260ENST00000637578 HNRNPA3P51991 378 aaKnown RBP12.13□□□□□ -0.47
CLN3-260ENST00000637578 MAJINQ3KP22 176 aa12.13□□□□□ -0.47
CLN3-260ENST00000637578 PACRGQ96M98 296 aaPredicted RBP12.13□□□□□ -0.47
CLN3-260ENST00000637578 MRPL35Q9NZE8 188 aaKnown RBP12.13□□□□□ -0.47
CLN3-260ENST00000637578 IGKV2-24A0A0C4DH68 120 aa12.13□□□□□ -0.47
CLN3-260ENST00000637578 F8VRH5 84 aa12.13□□□□□ -0.47
CLN3-260ENST00000637578 J3QL48 77 aa12.13□□□□□ -0.47
CLN3-260ENST00000637578 ZNF22P17026 224 aaPredicted RBP12.13□□□□□ -0.47
CLN3-260ENST00000637578 ODF1Q14990 250 aa12.13□□□□□ -0.47
CLN3-260ENST00000637578 LINC00474Q9P2X8 69 aa12.13□□□□□ -0.47
CLN3-260ENST00000637578 LRP1Q07954 4544 aaKnown RBP12.12□□□□□ -0.47
CLN3-260ENST00000637578 SMIM1B2RUZ4 78 aa12.12□□□□□ -0.47
CLN3-260ENST00000637578 C2orf48Q96LS8 159 aa12.12□□□□□ -0.47
CLN3-260ENST00000637578 MAP1LC3CQ9BXW4 147 aa12.12□□□□□ -0.47
CLN3-260ENST00000637578 OXTP01178 125 aa12.11□□□□□ -0.47
CLN3-260ENST00000637578 SPINK8P0C7L1 97 aa12.11□□□□□ -0.47
CLN3-260ENST00000637578 KIAA0087Q14695 138 aa12.11□□□□□ -0.47
CLN3-260ENST00000637578 H3BRM9 83 aa12.1□□□□□ -0.47
CLN3-260ENST00000637578 Q6ZRU5 148 aa12.1□□□□□ -0.47
CLN3-260ENST00000637578 STPG4Q8N801 248 aa12.1□□□□□ -0.47
CLN3-260ENST00000637578 CAMK2N2Q96S95 79 aa12.1□□□□□ -0.47
CLN3-260ENST00000637578 S100A6P06703 90 aa12.09□□□□□ -0.47
CLN3-260ENST00000637578 TMEM170BQ5T4T1 132 aa12.09□□□□□ -0.47
CLN3-260ENST00000637578 TOMM7Q9P0U1 55 aa12.09□□□□□ -0.47
CLN3-260ENST00000637578 FAT3Q8TDW7 4589 aa12.09□□□□□ -0.47
CLN3-260ENST00000637578 SYS1-DBNDD2H3BUS1 97 aa12.08□□□□□ -0.48
CLN3-260ENST00000637578 HIST3H2BBQ8N257 126 aa12.08□□□□□ -0.48
CLN3-260ENST00000637578 PMCHL2Q9BQD1 86 aa12.08□□□□□ -0.48
CLN3-260ENST00000637578 PRSS2P07478 247 aa12.07□□□□□ -0.48
CLN3-260ENST00000637578 PTTG1IPP53801 180 aa12.07□□□□□ -0.48
CLN3-260ENST00000637578 Q8IZM0 81 aa12.07□□□□□ -0.48
CLN3-260ENST00000637578 LOC107984640A0A0U1RRK4 108 aa12.06□□□□□ -0.48
CLN3-260ENST00000637578 F8WDY8 70 aa12.06□□□□□ -0.48
CLN3-260ENST00000637578 RNF151Q2KHN1 245 aa12.06□□□□□ -0.48
CLN3-260ENST00000637578 C2orf82Q6UX34 121 aa12.06□□□□□ -0.48
CLN3-260ENST00000637578 C7orf33Q8WU49 177 aa12.06□□□□□ -0.48
CLN3-260ENST00000637578 NDUFA1O15239 70 aa12.05□□□□□ -0.48
CLN3-260ENST00000637578 C3orf79P0CE67 100 aa12.05□□□□□ -0.48
CLN3-260ENST00000637578 C10orf25Q5T742 122 aa12.05□□□□□ -0.48
CLN3-260ENST00000637578 UNQ6190/PRO20217Q6UXQ8 127 aa12.05□□□□□ -0.48
CLN3-260ENST00000637578 IGLV5-39A0A0G2JS06 123 aa12.05□□□□□ -0.48
CLN3-260ENST00000637578 PLNP26678 52 aa12.05□□□□□ -0.48
CLN3-260ENST00000637578 SNRPEP62304 92 aaKnown RBP12.05□□□□□ -0.48
CLN3-260ENST00000637578 C6orf226Q5I0X4 101 aa12.05□□□□□ -0.48
CLN3-260ENST00000637578 COX7B2Q8TF08 81 aa12.05□□□□□ -0.48
CLN3-260ENST00000637578 DPM2O94777 84 aa12.04□□□□□ -0.48
CLN3-260ENST00000637578 S100A2P29034 98 aa12.04□□□□□ -0.48
CLN3-260ENST00000637578 KRTDAPP60985 99 aa12.04□□□□□ -0.48
CLN3-260ENST00000637578 HIST1H2BLQ99880 126 aa12.04□□□□□ -0.48
CLN3-260ENST00000637578 TMEM223A0PJW6 202 aa12.03□□□□□ -0.48
CLN3-260ENST00000637578 CKS1BP61024 79 aa12.03□□□□□ -0.48
CLN3-260ENST00000637578 PET117Q6UWS5 81 aa12.03□□□□□ -0.48
CLN3-260ENST00000637578 C6orf48Q9UBA6 75 aa12.02□□□□□ -0.49
CLN3-260ENST00000637578 C5orf52A6NGY3 159 aa12.01□□□□□ -0.49
CLN3-260ENST00000637578 IGKCP01834 107 aa12.01□□□□□ -0.49
CLN3-260ENST00000637578 GAGE2BQ13066 116 aa12.01□□□□□ -0.49
CLN3-260ENST00000637578 LINC01545Q5VT33 79 aa12.01□□□□□ -0.49
CLN3-260ENST00000637578 CXCL5P42830 114 aa12□□□□□ -0.49
CLN3-260ENST00000637578 PRR3P79522 188 aaKnown RBP12□□□□□ -0.49
CLN3-260ENST00000637578 TRBV30A0A0K0K1B3 111 aa11.98□□□□□ -0.49
CLN3-260ENST00000637578 A0A1W2PNN7 141 aa11.98□□□□□ -0.49
CLN3-260ENST00000637578 C9orf116Q5BN46 136 aaPredicted RBP11.97□□□□□ -0.49
CLN3-260ENST00000637578 TLX1NBP0CAT3 122 aa11.96□□□□□ -0.49
CLN3-260ENST00000637578 RPL18AQ02543 176 aaKnown RBP11.96□□□□□ -0.5
CLN3-260ENST00000637578 TMA7Q9Y2S6 64 aaKnown RBP11.95□□□□□ -0.5
CLN3-260ENST00000637578 C20orf202A1L168 122 aa11.94□□□□□ -0.5
CLN3-260ENST00000637578 MT1HL1P0DM35 61 aa11.94□□□□□ -0.5
CLN3-260ENST00000637578 HERVK_113P61574 105 aa11.93□□□□□ -0.5
CLN3-260ENST00000637578 Q6ZRP5 223 aa11.93□□□□□ -0.5
CLN3-260ENST00000637578 ZNF625Q96I27 306 aaPredicted RBP11.92□□□□□ -0.5
CLN3-260ENST00000637578 TSPEAR-AS2P59090 65 aa11.92□□□□□ -0.5
CLN3-260ENST00000637578 NDUFC2-KCTD14E9PQ53 114 aa11.91□□□□□ -0.5
CLN3-260ENST00000637578 LEPROTO15243 131 aa11.91□□□□□ -0.5
CLN3-260ENST00000637578 SRSF9Q13242 221 aaKnown RBP eCLIP11.91□□□□□ -0.5
CLN3-260ENST00000637578 SERTAD4-AS1Q5TG53 156 aa11.91□□□□□ -0.5
CLN3-260ENST00000637578 GAGE2EQ4V326 116 aa11.9□□□□□ -0.5
CLN3-260ENST00000637578 PLEKHB2Q96CS7 222 aa11.9□□□□□ -0.5
CLN3-260ENST00000637578 GAGE2DQ9UEU5 116 aa11.9□□□□□ -0.5
CLN3-260ENST00000637578 SPINK6Q6UWN8 80 aa11.89□□□□□ -0.51
CLN3-260ENST00000637578 ATOH7Q8N100 152 aa11.89□□□□□ -0.51
CLN3-260ENST00000637578 E9PLD3 99 aa11.88□□□□□ -0.51
CLN3-260ENST00000637578 J3QQQ9 107 aa11.88□□□□□ -0.51
CLN3-260ENST00000637578 SFTA2Q6UW10 78 aa11.88□□□□□ -0.51
CLN3-260ENST00000637578 NDUFA12Q9UI09 145 aa11.88□□□□□ -0.51
CLN3-260ENST00000637578 FAM168BA1KXE4 195 aa11.86□□□□□ -0.51
CLN3-260ENST00000637578 PHF5AQ7RTV0 110 aaKnown RBP11.86□□□□□ -0.51
CLN3-260ENST00000637578 ERG28Q9UKR5 140 aa11.86□□□□□ -0.51
CLN3-260ENST00000637578 LGALS3P17931 250 aaKnown RBP11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 98.5 ms