RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 F8WDY8 70 aa11.39□□□□□ -0.59
CLN3-247ENST00000636351 H0Y8G0 127 aa11.39□□□□□ -0.59
CLN3-247ENST00000636351 H3BRM9 83 aa11.39□□□□□ -0.59
CLN3-247ENST00000636351 NUPR1O60356 82 aa11.39□□□□□ -0.59
CLN3-247ENST00000636351 CHTF8P0CG12 524 aa11.39□□□□□ -0.59
CLN3-247ENST00000636351 DPH3Q96FX2 82 aa11.39□□□□□ -0.59
CLN3-247ENST00000636351 HSPB8Q9UJY1 196 aa11.39□□□□□ -0.59
CLN3-247ENST00000636351 CHTOPQ9Y3Y2 248 aaKnown RBP11.39□□□□□ -0.59
CLN3-247ENST00000636351 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.39□□□□□ -0.59
CLN3-247ENST00000636351 LRP1Q07954 4544 aaKnown RBP11.39□□□□□ -0.59
CLN3-247ENST00000636351 SPINK8P0C7L1 97 aa11.38□□□□□ -0.59
CLN3-247ENST00000636351 FABP4P15090 132 aa11.38□□□□□ -0.59
CLN3-247ENST00000636351 HMCN2Q8NDA2 5059 aa11.37□□□□□ -0.59
CLN3-247ENST00000636351 SMIM1B2RUZ4 78 aa11.37□□□□□ -0.59
CLN3-247ENST00000636351 CKS1BP61024 79 aa11.37□□□□□ -0.59
CLN3-247ENST00000636351 C6orf226Q5I0X4 101 aa11.37□□□□□ -0.59
CLN3-247ENST00000636351 TRAV12-1A0A0B4J245 112 aa11.36□□□□□ -0.59
CLN3-247ENST00000636351 LOC107984640A0A0U1RRK4 108 aa11.36□□□□□ -0.59
CLN3-247ENST00000636351 PANO1I0J062 215 aa11.36□□□□□ -0.59
CLN3-247ENST00000636351 RPL18AQ02543 176 aaKnown RBP11.36□□□□□ -0.59
CLN3-247ENST00000636351 KIAA0087Q14695 138 aa11.36□□□□□ -0.59
CLN3-247ENST00000636351 C2orf82Q6UX34 121 aa11.36□□□□□ -0.59
CLN3-247ENST00000636351 UNQ6190/PRO20217Q6UXQ8 127 aa11.36□□□□□ -0.59
CLN3-247ENST00000636351 Q8IZM0 81 aa11.36□□□□□ -0.59
CLN3-247ENST00000636351 MRPL35Q9NZE8 188 aaKnown RBP11.36□□□□□ -0.59
CLN3-247ENST00000636351 A0A096LNI7 61 aa11.35□□□□□ -0.59
CLN3-247ENST00000636351 C11orf86A6NJI1 115 aa11.35□□□□□ -0.59
CLN3-247ENST00000636351 ZNF22P17026 224 aaPredicted RBP11.35□□□□□ -0.59
CLN3-247ENST00000636351 KRTAP10-4P60372 401 aaPredicted RBP11.35□□□□□ -0.59
CLN3-247ENST00000636351 MAJINQ3KP22 176 aa11.35□□□□□ -0.59
CLN3-247ENST00000636351 TMEM170BQ5T4T1 132 aa11.35□□□□□ -0.59
CLN3-247ENST00000636351 C10orf25Q5T742 122 aa11.35□□□□□ -0.59
CLN3-247ENST00000636351 CIRBP-AS1Q8TBR5 109 aa11.35□□□□□ -0.59
CLN3-247ENST00000636351 GAGE2BQ13066 116 aa11.34□□□□□ -0.59
CLN3-247ENST00000636351 RNF151Q2KHN1 245 aa11.34□□□□□ -0.59
CLN3-247ENST00000636351 SPACA4Q8TDM5 124 aa11.34□□□□□ -0.59
CLN3-247ENST00000636351 F8VRH5 84 aa11.33□□□□□ -0.6
CLN3-247ENST00000636351 SERTAD4-AS1Q5TG53 156 aa11.33□□□□□ -0.6
CLN3-247ENST00000636351 COX7B2Q8TF08 81 aa11.33□□□□□ -0.6
CLN3-247ENST00000636351 C6orf48Q9UBA6 75 aa11.33□□□□□ -0.6
CLN3-247ENST00000636351 FAT3Q8TDW7 4589 aa11.33□□□□□ -0.6
CLN3-247ENST00000636351 CIRBPQ14011 172 aaKnown RBP11.32□□□□□ -0.6
CLN3-247ENST00000636351 LINC00474Q9P2X8 69 aa11.32□□□□□ -0.6
CLN3-247ENST00000636351 TRBV30A0A0K0K1B3 111 aa11.31□□□□□ -0.6
CLN3-247ENST00000636351 CXCL5P42830 114 aa11.31□□□□□ -0.6
CLN3-247ENST00000636351 PTTG1IPP53801 180 aa11.31□□□□□ -0.6
CLN3-247ENST00000636351 MAP1LC3CQ9BXW4 147 aa11.31□□□□□ -0.6
CLN3-247ENST00000636351 A0A087WYN8 130 aa11.3□□□□□ -0.6
CLN3-247ENST00000636351 ODF1Q14990 250 aa11.3□□□□□ -0.6
CLN3-247ENST00000636351 OXTP01178 125 aa11.29□□□□□ -0.6
CLN3-247ENST00000636351 STPG4Q8N801 248 aa11.29□□□□□ -0.6
CLN3-247ENST00000636351 UBR4Q5T4S7 5183 aa11.27□□□□□ -0.6
CLN3-247ENST00000636351 IGLV5-39A0A0G2JS06 123 aa11.27□□□□□ -0.61
CLN3-247ENST00000636351 GAGE2EQ4V326 116 aa11.27□□□□□ -0.61
CLN3-247ENST00000636351 C9orf116Q5BN46 136 aaPredicted RBP11.27□□□□□ -0.61
CLN3-247ENST00000636351 COA6Q5JTJ3 125 aaKnown RBP11.27□□□□□ -0.61
CLN3-247ENST00000636351 GAGE2DQ9UEU5 116 aa11.27□□□□□ -0.61
CLN3-247ENST00000636351 PLNP26678 52 aa11.26□□□□□ -0.61
CLN3-247ENST00000636351 PMCHL2Q9BQD1 86 aa11.26□□□□□ -0.61
CLN3-247ENST00000636351 PLAC8Q9NZF1 115 aa11.26□□□□□ -0.61
CLN3-247ENST00000636351 NDUFC2-KCTD14E9PQ53 114 aa11.25□□□□□ -0.61
CLN3-247ENST00000636351 DPM2O94777 84 aa11.25□□□□□ -0.61
CLN3-247ENST00000636351 TLX1NBP0CAT3 122 aa11.25□□□□□ -0.61
CLN3-247ENST00000636351 Q6ZRP5 223 aa11.25□□□□□ -0.61
CLN3-247ENST00000636351 TMEM223A0PJW6 202 aa11.24□□□□□ -0.61
CLN3-247ENST00000636351 RPL37AP61513 92 aaKnown RBP11.24□□□□□ -0.61
CLN3-247ENST00000636351 PLA2G2DQ9UNK4 145 aa11.24□□□□□ -0.61
CLN3-247ENST00000636351 SYS1-DBNDD2H3BUS1 97 aa11.22□□□□□ -0.61
CLN3-247ENST00000636351 IGKCP01834 107 aa11.22□□□□□ -0.61
CLN3-247ENST00000636351 PKHD1L1Q86WI1 4243 aa11.21□□□□□ -0.61
CLN3-247ENST00000636351 HNRNPA3P51991 378 aaKnown RBP11.21□□□□□ -0.61
CLN3-247ENST00000636351 HERVK_113P61574 105 aa11.21□□□□□ -0.61
CLN3-247ENST00000636351 C7orf33Q8WU49 177 aa11.21□□□□□ -0.61
CLN3-247ENST00000636351 S100A6P06703 90 aa11.2□□□□□ -0.62
CLN3-247ENST00000636351 KRTDAPP60985 99 aa11.2□□□□□ -0.62
CLN3-247ENST00000636351 SFTA2Q6UW10 78 aa11.19□□□□□ -0.62
CLN3-247ENST00000636351 A0A1W2PNN7 141 aa11.18□□□□□ -0.62
CLN3-247ENST00000636351 S100A2P29034 98 aa11.18□□□□□ -0.62
CLN3-247ENST00000636351 PET117Q6UWS5 81 aa11.18□□□□□ -0.62
CLN3-247ENST00000636351 FAM19A5Q7Z5A7 132 aaPredicted RBP11.18□□□□□ -0.62
CLN3-247ENST00000636351 ZNF625Q96I27 306 aaPredicted RBP11.18□□□□□ -0.62
CLN3-247ENST00000636351 C3orf79P0CE67 100 aa11.17□□□□□ -0.62
CLN3-247ENST00000636351 PFN2P35080 140 aa11.17□□□□□ -0.62
CLN3-247ENST00000636351 XAGE1AQ9HD64 81 aa11.17□□□□□ -0.62
CLN3-247ENST00000636351 FAM168BA1KXE4 195 aa11.16□□□□□ -0.62
CLN3-247ENST00000636351 C20orf202A1L168 122 aa11.15□□□□□ -0.62
CLN3-247ENST00000636351 C9orf129Q5T035 196 aaKnown RBP11.15□□□□□ -0.62
CLN3-247ENST00000636351 LINC01545Q5VT33 79 aa11.15□□□□□ -0.62
CLN3-247ENST00000636351 PLEKHB2Q96CS7 222 aa11.15□□□□□ -0.62
CLN3-247ENST00000636351 ERG28Q9UKR5 140 aa11.15□□□□□ -0.62
CLN3-247ENST00000636351 HIST3H2BBQ8N257 126 aa11.14□□□□□ -0.63
CLN3-247ENST00000636351 LEPROTO15243 131 aa11.13□□□□□ -0.63
CLN3-247ENST00000636351 NDUFA12Q9UI09 145 aa11.13□□□□□ -0.63
CLN3-247ENST00000636351 M0QXV9 152 aa11.12□□□□□ -0.63
CLN3-247ENST00000636351 LGALS3P17931 250 aaKnown RBP11.12□□□□□ -0.63
CLN3-247ENST00000636351 TSPEAR-AS2P59090 65 aa11.12□□□□□ -0.63
CLN3-247ENST00000636351 PHF5AQ7RTV0 110 aaKnown RBP11.12□□□□□ -0.63
CLN3-247ENST00000636351 MYMXA0A1B0GTQ4 84 aa11.11□□□□□ -0.63
CLN3-247ENST00000636351 J3QQQ9 107 aa11.11□□□□□ -0.63
CLN3-247ENST00000636351 LINC00158P58513 81 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms