RNA–Protein interactions for RNA: ENST00000627317.1

PNKP-221, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 767 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-221ENST00000627317 VPS13BQ7Z7G8 4022 aa9.5□□□□□ -0.89
PNKP-221ENST00000627317 SYS1-DBNDD2H3BUS1 97 aa9.49□□□□□ -0.89
PNKP-221ENST00000627317 DPM2O94777 84 aa9.49□□□□□ -0.89
PNKP-221ENST00000627317 CKS1BP61024 79 aa9.49□□□□□ -0.89
PNKP-221ENST00000627317 KIAA0087Q14695 138 aa9.49□□□□□ -0.89
PNKP-221ENST00000627317 C6orf226Q5I0X4 101 aa9.49□□□□□ -0.89
PNKP-221ENST00000627317 HIST3H2BBQ8N257 126 aa9.49□□□□□ -0.89
PNKP-221ENST00000627317 PMCHL2Q9BQD1 86 aa9.49□□□□□ -0.89
PNKP-221ENST00000627317 PKIGQ9Y2B9 76 aa9.49□□□□□ -0.89
PNKP-221ENST00000627317 SRRM2Q9UQ35 2752 aaKnown RBP9.48□□□□□ -0.89
PNKP-221ENST00000627317 KRTDAPP60985 99 aa9.48□□□□□ -0.89
PNKP-221ENST00000627317 Q6ZSA8 131 aa9.48□□□□□ -0.89
PNKP-221ENST00000627317 COX7B2Q8TF08 81 aa9.48□□□□□ -0.89
PNKP-221ENST00000627317 FAM30AQ9NZY2 134 aa9.48□□□□□ -0.89
PNKP-221ENST00000627317 IGLV5-39A0A0G2JS06 123 aa9.47□□□□□ -0.89
PNKP-221ENST00000627317 C3orf79P0CE67 100 aa9.47□□□□□ -0.89
PNKP-221ENST00000627317 PET117Q6UWS5 81 aa9.47□□□□□ -0.89
PNKP-221ENST00000627317 UNQ6190/PRO20217Q6UXQ8 127 aa9.47□□□□□ -0.89
PNKP-221ENST00000627317 IGKCP01834 107 aa9.46□□□□□ -0.9
PNKP-221ENST00000627317 CXCL5P42830 114 aa9.46□□□□□ -0.9
PNKP-221ENST00000627317 SNRPEP62304 92 aaKnown RBP9.46□□□□□ -0.9
PNKP-221ENST00000627317 C2orf82Q6UX34 121 aa9.46□□□□□ -0.9
PNKP-221ENST00000627317 TMEM223A0PJW6 202 aa9.45□□□□□ -0.9
PNKP-221ENST00000627317 C20orf202A1L168 122 aa9.45□□□□□ -0.9
PNKP-221ENST00000627317 HAMPP81172 84 aa9.45□□□□□ -0.9
PNKP-221ENST00000627317 RNF151Q2KHN1 245 aa9.45□□□□□ -0.9
PNKP-221ENST00000627317 C10orf25Q5T742 122 aa9.45□□□□□ -0.9
PNKP-221ENST00000627317 SDIM1Q6ZPB5 146 aa9.45□□□□□ -0.9
PNKP-221ENST00000627317 HIST1H2BLQ99880 126 aa9.45□□□□□ -0.9
PNKP-221ENST00000627317 TRBV30A0A0K0K1B3 111 aa9.44□□□□□ -0.9
PNKP-221ENST00000627317 LOC107984640A0A0U1RRK4 108 aa9.44□□□□□ -0.9
PNKP-221ENST00000627317 HERVK_113P61574 105 aa9.44□□□□□ -0.9
PNKP-221ENST00000627317 LINC01545Q5VT33 79 aa9.44□□□□□ -0.9
PNKP-221ENST00000627317 C6orf48Q9UBA6 75 aa9.44□□□□□ -0.9
PNKP-221ENST00000627317 C5orf52A6NGY3 159 aa9.42□□□□□ -0.9
PNKP-221ENST00000627317 EPM2AB3EWF7 344 aa9.42□□□□□ -0.9
PNKP-221ENST00000627317 RPL18AQ02543 176 aaKnown RBP9.42□□□□□ -0.9
PNKP-221ENST00000627317 Q5VSD8 79 aa9.42□□□□□ -0.9
PNKP-221ENST00000627317 TMA7Q9Y2S6 64 aaKnown RBP9.42□□□□□ -0.9
PNKP-221ENST00000627317 MYCBP2O75592 4640 aa9.41□□□□□ -0.9
PNKP-221ENST00000627317 IGKV2-24A0A0C4DH68 120 aa9.41□□□□□ -0.9
PNKP-221ENST00000627317 CHTF8P0CG12 524 aa9.41□□□□□ -0.9
PNKP-221ENST00000627317 A0A096LNI7 61 aa9.4□□□□□ -0.9
PNKP-221ENST00000627317 GAGE2BQ13066 116 aa9.4□□□□□ -0.9
PNKP-221ENST00000627317 SFTA2Q6UW10 78 aa9.4□□□□□ -0.9
PNKP-221ENST00000627317 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.4□□□□□ -0.9
PNKP-221ENST00000627317 SMR3BP02814 79 aaPredicted RBP9.39□□□□□ -0.91
PNKP-221ENST00000627317 C9orf116Q5BN46 136 aaPredicted RBP9.39□□□□□ -0.91
PNKP-221ENST00000627317 DPH3Q96FX2 82 aa9.39□□□□□ -0.91
PNKP-221ENST00000627317 LINC00474Q9P2X8 69 aa9.39□□□□□ -0.91
PNKP-221ENST00000627317 PANO1I0J062 215 aa9.38□□□□□ -0.91
PNKP-221ENST00000627317 TLX1NBP0CAT3 122 aa9.38□□□□□ -0.91
PNKP-221ENST00000627317 AKR1D1P51857 326 aa9.38□□□□□ -0.91
PNKP-221ENST00000627317 PTTG1IPP53801 180 aa9.38□□□□□ -0.91
PNKP-221ENST00000627317 MAJINQ3KP22 176 aa9.38□□□□□ -0.91
PNKP-221ENST00000627317 SCXQ7RTU7 201 aa9.38□□□□□ -0.91
PNKP-221ENST00000627317 SPACA4Q8TDM5 124 aa9.38□□□□□ -0.91
PNKP-221ENST00000627317 PLEKHB2Q96CS7 222 aa9.38□□□□□ -0.91
PNKP-221ENST00000627317 NDUFC2-KCTD14E9PQ53 114 aa9.37□□□□□ -0.91
PNKP-221ENST00000627317 LEPROTO15243 131 aa9.37□□□□□ -0.91
PNKP-221ENST00000627317 CIRBPQ14011 172 aaKnown RBP9.37□□□□□ -0.91
PNKP-221ENST00000627317 GAGE2EQ4V326 116 aa9.36□□□□□ -0.91
PNKP-221ENST00000627317 ZNF625Q96I27 306 aaPredicted RBP9.36□□□□□ -0.91
PNKP-221ENST00000627317 GAGE2DQ9UEU5 116 aa9.36□□□□□ -0.91
PNKP-221ENST00000627317 E9PLD3 99 aa9.35□□□□□ -0.91
PNKP-221ENST00000627317 J3QQQ9 107 aa9.35□□□□□ -0.91
PNKP-221ENST00000627317 LGALS3P17931 250 aaKnown RBP9.35□□□□□ -0.91
PNKP-221ENST00000627317 TSPEAR-AS2P59090 65 aa9.35□□□□□ -0.91
PNKP-221ENST00000627317 Q6ZRP5 223 aa9.35□□□□□ -0.91
PNKP-221ENST00000627317 ATOH7Q8N100 152 aa9.35□□□□□ -0.91
PNKP-221ENST00000627317 CIRBP-AS1Q8TBR5 109 aa9.35□□□□□ -0.91
PNKP-221ENST00000627317 NDUFA12Q9UI09 145 aa9.35□□□□□ -0.91
PNKP-221ENST00000627317 A0A087WYN8 130 aa9.34□□□□□ -0.91
PNKP-221ENST00000627317 MYMXA0A1B0GTQ4 84 aa9.34□□□□□ -0.91
PNKP-221ENST00000627317 STPG4Q8N801 248 aa9.34□□□□□ -0.91
PNKP-221ENST00000627317 ERG28Q9UKR5 140 aa9.34□□□□□ -0.91
PNKP-221ENST00000627317 HERC1Q15751 4861 aa9.33□□□□□ -0.92
PNKP-221ENST00000627317 HERV-K104P63124 156 aa9.33□□□□□ -0.92
PNKP-221ENST00000627317 INAFM2P0DMQ5 153 aa9.32□□□□□ -0.92
PNKP-221ENST00000627317 PFN2P35080 140 aa9.32□□□□□ -0.92
PNKP-221ENST00000627317 NMUP48645 174 aa9.32□□□□□ -0.92
PNKP-221ENST00000627317 FAM229AH3BQW9 127 aa9.31□□□□□ -0.92
PNKP-221ENST00000627317 SCGB1D1O95968 90 aa9.31□□□□□ -0.92
PNKP-221ENST00000627317 KRTAP10-4P60372 401 aaPredicted RBP9.31□□□□□ -0.92
PNKP-221ENST00000627317 MEIG1Q5JSS6 88 aa9.31□□□□□ -0.92
PNKP-221ENST00000627317 PLAC8Q9NZF1 115 aa9.31□□□□□ -0.92
PNKP-221ENST00000627317 DMBT1Q9UGM3 2413 aaPredicted RBP9.3□□□□□ -0.92
PNKP-221ENST00000627317 COX17Q14061 63 aa9.3□□□□□ -0.92
PNKP-221ENST00000627317 LINC00528Q8N1L1 170 aa9.3□□□□□ -0.92
PNKP-221ENST00000627317 XAGE1AQ9HD64 81 aa9.3□□□□□ -0.92
PNKP-221ENST00000627317 LINC00158P58513 81 aa9.29□□□□□ -0.92
PNKP-221ENST00000627317 FLG2Q5D862 2391 aaPredicted RBP9.29□□□□□ -0.92
PNKP-221ENST00000627317 IGKV2D-26A0A0A0MRZ7 120 aa9.28□□□□□ -0.92
PNKP-221ENST00000627317 LINC00587B1AMM8 73 aa9.28□□□□□ -0.92
PNKP-221ENST00000627317 HSBP1L1C9JCN9 74 aa9.28□□□□□ -0.92
PNKP-221ENST00000627317 ANKRD39Q53RE8 183 aa9.28□□□□□ -0.92
PNKP-221ENST00000627317 C9orf129Q5T035 196 aaKnown RBP9.28□□□□□ -0.92
PNKP-221ENST00000627317 FAM19A5Q7Z5A7 132 aaPredicted RBP9.28□□□□□ -0.92
PNKP-221ENST00000627317 A0A0U1RRA0 63 aa9.27□□□□□ -0.93
PNKP-221ENST00000627317 A0A1W2PNN7 141 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms