RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 TIMM21Q9BVV7 248 aa3.17□□□□□ -1.9
VPS29-212ENST00000621131 GTSF1LQ9H1H1 148 aa3.17□□□□□ -1.9
VPS29-212ENST00000621131 MRPL35Q9NZE8 188 aaKnown RBP3.17□□□□□ -1.9
VPS29-212ENST00000621131 PRO0255Q9UI72 69 aa3.17□□□□□ -1.9
VPS29-212ENST00000621131 NACAE9PAV3 2078 aa3.16□□□□□ -1.9
VPS29-212ENST00000621131 CSMD3Q7Z407 3707 aa3.16□□□□□ -1.9
VPS29-212ENST00000621131 H3BRM9 83 aa3.16□□□□□ -1.9
VPS29-212ENST00000621131 SIVA1O15304 175 aa3.16□□□□□ -1.9
VPS29-212ENST00000621131 P0DMU3 169 aa3.16□□□□□ -1.9
VPS29-212ENST00000621131 FAM231AP0DMU4 169 aa3.16□□□□□ -1.9
VPS29-212ENST00000621131 FAM231CP0DMU5 169 aa3.16□□□□□ -1.9
VPS29-212ENST00000621131 COX8AP10176 69 aa3.16□□□□□ -1.9
VPS29-212ENST00000621131 ZNF25P17030 456 aaPredicted RBP3.16□□□□□ -1.9
VPS29-212ENST00000621131 UBE2D3P61077 147 aa3.16□□□□□ -1.9
VPS29-212ENST00000621131 UBE2D2P62837 147 aa3.16□□□□□ -1.9
VPS29-212ENST00000621131 RPL39P62891 51 aaKnown RBP3.16□□□□□ -1.9
VPS29-212ENST00000621131 OR5A1Q8NGJ0 315 aa3.16□□□□□ -1.9
VPS29-212ENST00000621131 C14orf144Q96I85 54 aa3.16□□□□□ -1.9
VPS29-212ENST00000621131 CST9LQ9H4G1 147 aa3.16□□□□□ -1.9
VPS29-212ENST00000621131 GEMIN7Q9H840 131 aaKnown RBP3.16□□□□□ -1.9
VPS29-212ENST00000621131 HHLA3Q9XRX5 114 aa3.16□□□□□ -1.9
VPS29-212ENST00000621131 MRPS16Q9Y3D3 137 aaKnown RBP3.16□□□□□ -1.9
VPS29-212ENST00000621131 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.15□□□□□ -1.91
VPS29-212ENST00000621131 IGKV2-29A2NJV5 120 aaPredicted RBP3.15□□□□□ -1.91
VPS29-212ENST00000621131 IGIPA6NJ69 53 aa3.15□□□□□ -1.91
VPS29-212ENST00000621131 C11orf86A6NJI1 115 aa3.15□□□□□ -1.91
VPS29-212ENST00000621131 G3V4G9 280 aa3.15□□□□□ -1.91
VPS29-212ENST00000621131 DLEU1O43261 78 aa3.15□□□□□ -1.91
VPS29-212ENST00000621131 LGALS3P17931 250 aaKnown RBP3.15□□□□□ -1.91
VPS29-212ENST00000621131 CTAG1AP78358 180 aa3.15□□□□□ -1.91
VPS29-212ENST00000621131 MRPS36P82909 103 aaKnown RBP3.15□□□□□ -1.91
VPS29-212ENST00000621131 BATFQ16520 125 aa3.15□□□□□ -1.91
VPS29-212ENST00000621131 MAJINQ3KP22 176 aa3.15□□□□□ -1.91
VPS29-212ENST00000621131 TMEM170BQ5T4T1 132 aa3.15□□□□□ -1.91
VPS29-212ENST00000621131 ATP6V0E2Q8NHE4 81 aa3.15□□□□□ -1.91
VPS29-212ENST00000621131 CHCHD7Q9BUK0 85 aa3.15□□□□□ -1.91
VPS29-212ENST00000621131 CHAC1Q9BUX1 264 aa3.15□□□□□ -1.91
VPS29-212ENST00000621131 C11orf68Q9H3H3 251 aaKnown RBP3.15□□□□□ -1.91
VPS29-212ENST00000621131 UBE2D4Q9Y2X8 147 aa3.15□□□□□ -1.91
VPS29-212ENST00000621131 ICOSQ9Y6W8 199 aa3.15□□□□□ -1.91
VPS29-212ENST00000621131 HERC1Q15751 4861 aa3.15□□□□□ -1.91
VPS29-212ENST00000621131 TRAV26-1A0A087WT03 109 aa3.14□□□□□ -1.91
VPS29-212ENST00000621131 TINCRA0A1B0GVN0 87 aa3.14□□□□□ -1.91
VPS29-212ENST00000621131 A6NDN8 102 aa3.14□□□□□ -1.91
VPS29-212ENST00000621131 E9PLD3 99 aa3.14□□□□□ -1.91
VPS29-212ENST00000621131 F5H768 121 aa3.14□□□□□ -1.91
VPS29-212ENST00000621131 FGF6P10767 208 aa3.14□□□□□ -1.91
VPS29-212ENST00000621131 HTN3P15516 51 aa3.14□□□□□ -1.91
VPS29-212ENST00000621131 HERVK_113P63121 156 aa3.14□□□□□ -1.91
VPS29-212ENST00000621131 HSD52Q0P140 79 aa3.14□□□□□ -1.91
VPS29-212ENST00000621131 MRPL23Q16540 153 aaKnown RBP3.14□□□□□ -1.91
VPS29-212ENST00000621131 COL5A1-AS1Q5SY13 56 aa3.14□□□□□ -1.91
VPS29-212ENST00000621131 SCGB1D4Q6XE38 83 aa3.14□□□□□ -1.91
VPS29-212ENST00000621131 BOD1L2Q8IYS8 172 aa3.14□□□□□ -1.91
VPS29-212ENST00000621131 Q8NAQ8 132 aa3.14□□□□□ -1.91
VPS29-212ENST00000621131 DEFB104AQ8WTQ1 72 aa3.14□□□□□ -1.91
VPS29-212ENST00000621131 PLEKHB2Q96CS7 222 aa3.14□□□□□ -1.91
VPS29-212ENST00000621131 CSDC2Q9Y534 153 aaKnown RBP3.14□□□□□ -1.91
VPS29-212ENST00000621131 UBR4Q5T4S7 5183 aa3.14□□□□□ -1.91
VPS29-212ENST00000621131 TRBV6-8A0A0A6YYG3 113 aa3.13□□□□□ -1.91
VPS29-212ENST00000621131 TRAV8-6A0A0B4J262 113 aa3.13□□□□□ -1.91
VPS29-212ENST00000621131 MYMXA0A1B0GTQ4 84 aa3.13□□□□□ -1.91
VPS29-212ENST00000621131 ZNF815PA8K554 130 aa3.13□□□□□ -1.91
VPS29-212ENST00000621131 LEPROTO15243 131 aa3.13□□□□□ -1.91
VPS29-212ENST00000621131 DEFB4AO15263 64 aa3.13□□□□□ -1.91
VPS29-212ENST00000621131 TCTAP57738 103 aa3.13□□□□□ -1.91
VPS29-212ENST00000621131 TAL2Q16559 108 aa3.13□□□□□ -1.91
VPS29-212ENST00000621131 DEFB121Q5J5C9 76 aa3.13□□□□□ -1.91
VPS29-212ENST00000621131 Q6ZUT4 128 aa3.13□□□□□ -1.91
VPS29-212ENST00000621131 LINC00469Q8N7U9 141 aa3.13□□□□□ -1.91
VPS29-212ENST00000621131 FAM104AQ969W3 186 aa3.13□□□□□ -1.91
VPS29-212ENST00000621131 AMELXQ99217 191 aa3.13□□□□□ -1.91
VPS29-212ENST00000621131 Q9HAA7 133 aa3.13□□□□□ -1.91
VPS29-212ENST00000621131 HIGD1BQ9P298 99 aa3.13□□□□□ -1.91
VPS29-212ENST00000621131 ABCA13Q86UQ4 5058 aa3.12□□□□□ -1.91
VPS29-212ENST00000621131 IGLV4-69A0A075B6H9 119 aa3.12□□□□□ -1.91
VPS29-212ENST00000621131 A0A0J9YXV3 536 aa3.12□□□□□ -1.91
VPS29-212ENST00000621131 A0A0J9YY99 117 aa3.12□□□□□ -1.91
VPS29-212ENST00000621131 LOC100131303A0A0U1RQF7 123 aa3.12□□□□□ -1.91
VPS29-212ENST00000621131 TMEM223A0PJW6 202 aa3.12□□□□□ -1.91
VPS29-212ENST00000621131 TMEM238C9JI98 176 aa3.12□□□□□ -1.91
VPS29-212ENST00000621131 TMEM262E9PQX1 116 aa3.12□□□□□ -1.91
VPS29-212ENST00000621131 H3BNG1 76 aa3.12□□□□□ -1.91
VPS29-212ENST00000621131 CCL25O15444 150 aa3.12□□□□□ -1.91
VPS29-212ENST00000621131 LINC00694P0DN24 101 aa3.12□□□□□ -1.91
VPS29-212ENST00000621131 HINT1P49773 126 aaPredicted RBP3.12□□□□□ -1.91
VPS29-212ENST00000621131 SS18Q15532 418 aa3.12□□□□□ -1.91
VPS29-212ENST00000621131 COPS9Q8WXC6 57 aa3.12□□□□□ -1.91
VPS29-212ENST00000621131 HIST1H4GQ99525 98 aa3.12□□□□□ -1.91
VPS29-212ENST00000621131 TRAV13-1A0A0B4J241 112 aa3.11□□□□□ -1.91
VPS29-212ENST00000621131 J3QQQ9 107 aa3.11□□□□□ -1.91
VPS29-212ENST00000621131 ZNF22P17026 224 aaPredicted RBP3.11□□□□□ -1.91
VPS29-212ENST00000621131 UBE2D1P51668 147 aa3.11□□□□□ -1.91
VPS29-212ENST00000621131 MPV17L2Q567V2 206 aa3.11□□□□□ -1.91
VPS29-212ENST00000621131 RNASE13Q5GAN3 156 aaKnown RBP3.11□□□□□ -1.91
VPS29-212ENST00000621131 CEMP1Q6PRD7 247 aaPredicted RBP3.11□□□□□ -1.91
VPS29-212ENST00000621131 SFTA2Q6UW10 78 aa3.11□□□□□ -1.91
VPS29-212ENST00000621131 NTM-AS1Q6ZSK4 140 aa3.11□□□□□ -1.91
VPS29-212ENST00000621131 PCP2Q8IVA1 136 aa3.11□□□□□ -1.91
VPS29-212ENST00000621131 SBSPONQ8IVN8 264 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 92.2 ms