RNA–Protein interactions for RNA: ENST00000620787.4

PDLIM3-212, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4 BASIC

Gene PDLIM3, Length 2,352 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-212ENST00000620787 ORMDL1Q9P0S3 153 aa13.59□□□□□ -0.23
PDLIM3-212ENST00000620787 NF1P21359 2839 aa13.59□□□□□ -0.23
PDLIM3-212ENST00000620787 ABCA12Q86UK0 2595 aa13.59□□□□□ -0.23
PDLIM3-212ENST00000620787 PRB1P04280 392 aa13.59□□□□□ -0.23
PDLIM3-212ENST00000620787 A0A087WVE0 104 aa13.57□□□□□ -0.24
PDLIM3-212ENST00000620787 LINC00167Q96N53 147 aa13.57□□□□□ -0.24
PDLIM3-212ENST00000620787 ESM1Q9NQ30 184 aa13.57□□□□□ -0.24
PDLIM3-212ENST00000620787 A0A1B0GX51 115 aa13.56□□□□□ -0.24
PDLIM3-212ENST00000620787 hADV29S1A0JD25 119 aa13.56□□□□□ -0.24
PDLIM3-212ENST00000620787 XCL1P47992 114 aa13.56□□□□□ -0.24
PDLIM3-212ENST00000620787 KRTAP1-3Q8IUG1 177 aa13.56□□□□□ -0.24
PDLIM3-212ENST00000620787 LINC01561Q8N1V8 128 aa13.56□□□□□ -0.24
PDLIM3-212ENST00000620787 NANOS2P60321 138 aaKnown RBP13.56□□□□□ -0.24
PDLIM3-212ENST00000620787 CYSTM1Q9H1C7 97 aa13.56□□□□□ -0.24
PDLIM3-212ENST00000620787 IGLV1-51P01701 117 aa13.55□□□□□ -0.24
PDLIM3-212ENST00000620787 CCKP06307 115 aa13.55□□□□□ -0.24
PDLIM3-212ENST00000620787 Q8IZM0 81 aa13.55□□□□□ -0.24
PDLIM3-212ENST00000620787 USP24Q9UPU5 2620 aa13.55□□□□□ -0.24
PDLIM3-212ENST00000620787 SONP18583 2426 aaKnown RBP13.54□□□□□ -0.24
PDLIM3-212ENST00000620787 LOC107984640A0A0U1RRK4 108 aa13.53□□□□□ -0.24
PDLIM3-212ENST00000620787 SERP2Q8N6R1 65 aa13.52□□□□□ -0.24
PDLIM3-212ENST00000620787 PRR3P79522 188 aaKnown RBP13.52□□□□□ -0.25
PDLIM3-212ENST00000620787 ZNF462Q96JM2 2506 aa13.52□□□□□ -0.25
PDLIM3-212ENST00000620787 A0A1B0GUV1 79 aa13.51□□□□□ -0.25
PDLIM3-212ENST00000620787 USP17L23D6RBM5 183 aa13.51□□□□□ -0.25
PDLIM3-212ENST00000620787 DEFB130BP0DP73 79 aa13.51□□□□□ -0.25
PDLIM3-212ENST00000620787 DEFB130AP0DP74 79 aa13.51□□□□□ -0.25
PDLIM3-212ENST00000620787 GYPEP15421 78 aa13.51□□□□□ -0.25
PDLIM3-212ENST00000620787 CLPSL2Q6UWE3 100 aa13.51□□□□□ -0.25
PDLIM3-212ENST00000620787 Q8N814 137 aa13.51□□□□□ -0.25
PDLIM3-212ENST00000620787 BBC3Q96PG8 261 aaPredicted RBP13.51□□□□□ -0.25
PDLIM3-212ENST00000620787 UPK3BQ9BT76 320 aa13.51□□□□□ -0.25
PDLIM3-212ENST00000620787 J3KT08 172 aa13.5□□□□□ -0.25
PDLIM3-212ENST00000620787 ITPR3Q14573 2671 aa13.5□□□□□ -0.25
PDLIM3-212ENST00000620787 LINC00612Q8N6U2 182 aa13.49□□□□□ -0.25
PDLIM3-212ENST00000620787 KIR2DL5BQ8NHK3 375 aa13.49□□□□□ -0.25
PDLIM3-212ENST00000620787 UBR5O95071 2799 aaPredicted RBP13.48□□□□□ -0.25
PDLIM3-212ENST00000620787 JMJD7-PLA2G4BH0Y9G9 81 aa13.48□□□□□ -0.25
PDLIM3-212ENST00000620787 LINC01006Q8NI28 216 aa13.47□□□□□ -0.25
PDLIM3-212ENST00000620787 SETD2Q9BYW2 2564 aaPredicted RBP13.47□□□□□ -0.25
PDLIM3-212ENST00000620787 NDUFC2O95298 119 aa13.46□□□□□ -0.25
PDLIM3-212ENST00000620787 KIAA0087Q14695 138 aa13.46□□□□□ -0.25
PDLIM3-212ENST00000620787 CFAP161Q6P656 301 aa13.46□□□□□ -0.25
PDLIM3-212ENST00000620787 TMEM256-PLSCR3K7ERE1 68 aa13.45□□□□□ -0.26
PDLIM3-212ENST00000620787 S100A7L2Q5SY68 101 aa13.44□□□□□ -0.26
PDLIM3-212ENST00000620787 APCP25054 2843 aa13.44□□□□□ -0.26
PDLIM3-212ENST00000620787 HILS1P60008 231 aa13.43□□□□□ -0.26
PDLIM3-212ENST00000620787 RPS28P62857 69 aaKnown RBP13.43□□□□□ -0.26
PDLIM3-212ENST00000620787 COX17Q14061 63 aa13.43□□□□□ -0.26
PDLIM3-212ENST00000620787 A0A096LPF7 62 aa13.43□□□□□ -0.26
PDLIM3-212ENST00000620787 TMEM258P61165 79 aa13.42□□□□□ -0.26
PDLIM3-212ENST00000620787 ATP5EP2Q5VTU8 51 aa13.42□□□□□ -0.26
PDLIM3-212ENST00000620787 Q8NDZ9 215 aa13.42□□□□□ -0.26
PDLIM3-212ENST00000620787 C16orf95Q9H693 158 aa13.42□□□□□ -0.26
PDLIM3-212ENST00000620787 LYPD5Q6UWN5 251 aa13.41□□□□□ -0.26
PDLIM3-212ENST00000620787 FAM19A5Q7Z5A7 132 aaPredicted RBP13.41□□□□□ -0.26
PDLIM3-212ENST00000620787 WFDC11Q8NEX6 87 aa13.41□□□□□ -0.26
PDLIM3-212ENST00000620787 C9orf116Q5BN46 136 aaPredicted RBP13.4□□□□□ -0.26
PDLIM3-212ENST00000620787 CD164L2Q6UWJ8 174 aa13.4□□□□□ -0.26
PDLIM3-212ENST00000620787 LINC00269Q8N2A0 174 aa13.4□□□□□ -0.26
PDLIM3-212ENST00000620787 WFDC9Q8NEX5 89 aa13.4□□□□□ -0.26
PDLIM3-212ENST00000620787 IGHV4-28A0A0C4DH34 117 aa13.39□□□□□ -0.27
PDLIM3-212ENST00000620787 C6orf99Q4VX62 202 aa13.39□□□□□ -0.27
PDLIM3-212ENST00000620787 PRO0255Q9UI72 69 aa13.39□□□□□ -0.27
PDLIM3-212ENST00000620787 ZNF843Q8N446 348 aa13.39□□□□□ -0.27
PDLIM3-212ENST00000620787 FN1P02751 2386 aaKnown RBP13.38□□□□□ -0.27
PDLIM3-212ENST00000620787 CHCHD10Q8WYQ3 142 aaPredicted RBP13.38□□□□□ -0.27
PDLIM3-212ENST00000620787 FAM19A1Q7Z5A9 133 aa13.38□□□□□ -0.27
PDLIM3-212ENST00000620787 X6R8D5 127 aa13.38□□□□□ -0.27
PDLIM3-212ENST00000620787 FLNAP21333 2647 aaKnown RBP13.38□□□□□ -0.27
PDLIM3-212ENST00000620787 DPH3Q96FX2 82 aa13.37□□□□□ -0.27
PDLIM3-212ENST00000620787 RNASE1P07998 156 aaKnown RBP13.37□□□□□ -0.27
PDLIM3-212ENST00000620787 Q8N3U1 123 aa13.37□□□□□ -0.27
PDLIM3-212ENST00000620787 IGLV10-54A0A075B6I4 117 aa13.36□□□□□ -0.27
PDLIM3-212ENST00000620787 ENHOQ6UWT2 76 aa13.36□□□□□ -0.27
PDLIM3-212ENST00000620787 LINC00575Q6W349 94 aa13.36□□□□□ -0.27
PDLIM3-212ENST00000620787 GHRHP01286 108 aa13.36□□□□□ -0.27
PDLIM3-212ENST00000620787 CCDC168Q8NDH2 2452 aa13.35□□□□□ -0.27
PDLIM3-212ENST00000620787 TRAV23DV6A0A075B6W5 121 aa13.35□□□□□ -0.27
PDLIM3-212ENST00000620787 UBL5Q9BZL1 73 aa13.34□□□□□ -0.27
PDLIM3-212ENST00000620787 TRBV10-3A0A0K0K1G6 114 aa13.33□□□□□ -0.28
PDLIM3-212ENST00000620787 REG3AQ06141 175 aa13.33□□□□□ -0.28
PDLIM3-212ENST00000620787 GCN1Q92616 2671 aaKnown RBP13.33□□□□□ -0.28
PDLIM3-212ENST00000620787 ANGP03950 147 aaKnown RBP13.32□□□□□ -0.28
PDLIM3-212ENST00000620787 Q6ZQT0 140 aa13.32□□□□□ -0.28
PDLIM3-212ENST00000620787 DSCR8Q96T75 97 aa13.31□□□□□ -0.28
PDLIM3-212ENST00000620787 SMIM9A6NGZ8 99 aa13.3□□□□□ -0.28
PDLIM3-212ENST00000620787 OXTP01178 125 aa13.3□□□□□ -0.28
PDLIM3-212ENST00000620787 KRTAP1-1Q07627 177 aa13.3□□□□□ -0.28
PDLIM3-212ENST00000620787 ZNF561-AS1K7EIQ3 104 aa13.3□□□□□ -0.28
PDLIM3-212ENST00000620787 C10orf25Q5T742 122 aa13.3□□□□□ -0.28
PDLIM3-212ENST00000620787 LOC110117498A0A087WWA1 95 aa13.29□□□□□ -0.28
PDLIM3-212ENST00000620787 RBM3P98179 157 aaKnown RBP13.29□□□□□ -0.28
PDLIM3-212ENST00000620787 C6orf223Q8N319 242 aa13.28□□□□□ -0.28
PDLIM3-212ENST00000620787 UNQ6190/PRO20217Q6UXQ8 127 aa13.28□□□□□ -0.28
PDLIM3-212ENST00000620787 NBEAL2Q6ZNJ1 2754 aa13.28□□□□□ -0.28
PDLIM3-212ENST00000620787 M0R2N4 97 aa13.27□□□□□ -0.29
PDLIM3-212ENST00000620787 ANK3Q12955 4377 aaKnown RBP13.27□□□□□ -0.29
PDLIM3-212ENST00000620787 LYRM9A8MSI8 78 aa13.27□□□□□ -0.29
PDLIM3-212ENST00000620787 IGLV6-57P01721 117 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms