RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 CSDC2Q9Y534 153 aaKnown RBP10.9□□□□□ -0.66
CPSF1-213ENST00000620219 EGFEM1PQ0D2K5 195 aa10.9□□□□□ -0.66
CPSF1-213ENST00000620219 LECT2O14960 151 aa10.9□□□□□ -0.66
CPSF1-213ENST00000620219 STAB2Q8WWQ8 2551 aa10.9□□□□□ -0.67
CPSF1-213ENST00000620219 S100A7L2Q5SY68 101 aa10.9□□□□□ -0.67
CPSF1-213ENST00000620219 ADAMTSL4-AS1Q5T5F5 129 aa10.9□□□□□ -0.67
CPSF1-213ENST00000620219 ZFAND6Q6FIF0 208 aa10.9□□□□□ -0.67
CPSF1-213ENST00000620219 HERV-K104P63124 156 aa10.89□□□□□ -0.67
CPSF1-213ENST00000620219 ETDBQ3ZM63 59 aa10.88□□□□□ -0.67
CPSF1-213ENST00000620219 TENM3Q9P273 2699 aa10.88□□□□□ -0.67
CPSF1-213ENST00000620219 CFC1BP0CG36 223 aa10.88□□□□□ -0.67
CPSF1-213ENST00000620219 CFC1P0CG37 223 aa10.88□□□□□ -0.67
CPSF1-213ENST00000620219 GAGE2EQ4V326 116 aa10.88□□□□□ -0.67
CPSF1-213ENST00000620219 GAGE2DQ9UEU5 116 aa10.88□□□□□ -0.67
CPSF1-213ENST00000620219 FAM104AQ969W3 186 aa10.87□□□□□ -0.67
CPSF1-213ENST00000620219 SND1-IT1Q9HBX3 110 aa10.87□□□□□ -0.67
CPSF1-213ENST00000620219 TSPAN13O95857 204 aa10.87□□□□□ -0.67
CPSF1-213ENST00000620219 CD164L2Q6UWJ8 174 aa10.87□□□□□ -0.67
CPSF1-213ENST00000620219 ESRGQ1W209 222 aa10.87□□□□□ -0.67
CPSF1-213ENST00000620219 K7ERU9 68 aa10.86□□□□□ -0.67
CPSF1-213ENST00000620219 A0A1B0GV72 72 aa10.85□□□□□ -0.67
CPSF1-213ENST00000620219 NDUFA1O15239 70 aa10.85□□□□□ -0.67
CPSF1-213ENST00000620219 MIAQ16674 131 aa10.85□□□□□ -0.67
CPSF1-213ENST00000620219 DNAL4O96015 105 aa10.85□□□□□ -0.67
CPSF1-213ENST00000620219 WFDC2Q14508 124 aa10.85□□□□□ -0.67
CPSF1-213ENST00000620219 SNCGO76070 127 aa10.84□□□□□ -0.67
CPSF1-213ENST00000620219 LINC00612Q8N6U2 182 aa10.84□□□□□ -0.67
CPSF1-213ENST00000620219 WIPF1O43516 503 aa10.84□□□□□ -0.67
CPSF1-213ENST00000620219 C9orf116Q5BN46 136 aaPredicted RBP10.84□□□□□ -0.67
CPSF1-213ENST00000620219 A0A1B0GUV1 79 aa10.84□□□□□ -0.67
CPSF1-213ENST00000620219 C9JAW5 83 aa10.83□□□□□ -0.68
CPSF1-213ENST00000620219 J3QR89 54 aa10.83□□□□□ -0.68
CPSF1-213ENST00000620219 C15orf53Q8NAA6 179 aa10.83□□□□□ -0.68
CPSF1-213ENST00000620219 SPANXB1Q9NS25 103 aaPredicted RBP10.82□□□□□ -0.68
CPSF1-213ENST00000620219 A0A087WZ39 114 aa10.82□□□□□ -0.68
CPSF1-213ENST00000620219 IFITM1P13164 125 aa10.82□□□□□ -0.68
CPSF1-213ENST00000620219 LINC00308Q8TCZ7 52 aa10.82□□□□□ -0.68
CPSF1-213ENST00000620219 XAGE1AQ9HD64 81 aa10.82□□□□□ -0.68
CPSF1-213ENST00000620219 KLK5Q9Y337 293 aaPredicted RBP10.82□□□□□ -0.68
CPSF1-213ENST00000620219 M0R2N4 97 aa10.81□□□□□ -0.68
CPSF1-213ENST00000620219 IGHV3OR16-9A0A0B4J2B5 98 aa10.81□□□□□ -0.68
CPSF1-213ENST00000620219 OCIAD2Q56VL3 154 aa10.8□□□□□ -0.68
CPSF1-213ENST00000620219 C6orf223Q8N319 242 aa10.8□□□□□ -0.68
CPSF1-213ENST00000620219 RMI2Q96E14 147 aa10.8□□□□□ -0.68
CPSF1-213ENST00000620219 RPL18AQ02543 176 aaKnown RBP10.8□□□□□ -0.68
CPSF1-213ENST00000620219 UNQ6190/PRO20217Q6UXQ8 127 aa10.8□□□□□ -0.68
CPSF1-213ENST00000620219 EIF4EBP3O60516 100 aaPredicted RBP10.79□□□□□ -0.68
CPSF1-213ENST00000620219 NCR3O14931 201 aa10.78□□□□□ -0.68
CPSF1-213ENST00000620219 CLEC2BQ92478 149 aa10.78□□□□□ -0.68
CPSF1-213ENST00000620219 TCL1BO95988 128 aa10.77□□□□□ -0.68
CPSF1-213ENST00000620219 TRAV8-4A0A0B4J246 113 aa10.76□□□□□ -0.69
CPSF1-213ENST00000620219 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.75□□□□□ -0.69
CPSF1-213ENST00000620219 ATXN8Q156A1 80 aa10.75□□□□□ -0.69
CPSF1-213ENST00000620219 TRAV13-2A0A0B4J235 113 aa10.75□□□□□ -0.69
CPSF1-213ENST00000620219 CXCL5P42830 114 aa10.75□□□□□ -0.69
CPSF1-213ENST00000620219 GAGE2BQ13066 116 aa10.75□□□□□ -0.69
CPSF1-213ENST00000620219 IBA57-AS1B1ANH7 110 aa10.74□□□□□ -0.69
CPSF1-213ENST00000620219 IGLV5-39A0A0G2JS06 123 aa10.74□□□□□ -0.69
CPSF1-213ENST00000620219 IGLV5-45A0A087WSX0 123 aa10.73□□□□□ -0.69
CPSF1-213ENST00000620219 TRIAP1O43715 76 aa10.73□□□□□ -0.69
CPSF1-213ENST00000620219 Q8IZM0 81 aa10.73□□□□□ -0.69
CPSF1-213ENST00000620219 PRR3P79522 188 aaKnown RBP10.73□□□□□ -0.69
CPSF1-213ENST00000620219 TM2D3Q9BRN9 247 aa10.73□□□□□ -0.69
CPSF1-213ENST00000620219 NKAPP1Q8N9T2 125 aa10.72□□□□□ -0.69
CPSF1-213ENST00000620219 SPANXCQ9NY87 97 aa10.72□□□□□ -0.69
CPSF1-213ENST00000620219 SPANXDQ9BXN6 97 aa10.71□□□□□ -0.69
CPSF1-213ENST00000620219 A0A0B4J2C4 111 aa10.71□□□□□ -0.69
CPSF1-213ENST00000620219 IGKV2-24A0A0C4DH68 120 aa10.71□□□□□ -0.69
CPSF1-213ENST00000620219 ENHOQ6UWT2 76 aa10.71□□□□□ -0.69
CPSF1-213ENST00000620219 TRBV20-1A0A075B6N2 111 aa10.71□□□□□ -0.7
CPSF1-213ENST00000620219 F8W1H4 67 aa10.71□□□□□ -0.7
CPSF1-213ENST00000620219 LINC00588Q9Y4M8 146 aa10.7□□□□□ -0.7
CPSF1-213ENST00000620219 SLC25A20O43772 301 aa10.7□□□□□ -0.7
CPSF1-213ENST00000620219 LITAFQ99732 161 aa10.7□□□□□ -0.7
CPSF1-213ENST00000620219 B9D2Q9BPU9 175 aa10.7□□□□□ -0.7
CPSF1-213ENST00000620219 SOSTDC1Q6X4U4 206 aa10.69□□□□□ -0.7
CPSF1-213ENST00000620219 SYCNQ0VAF6 134 aa10.68□□□□□ -0.7
CPSF1-213ENST00000620219 TIMM17BO60830 172 aa10.68□□□□□ -0.7
CPSF1-213ENST00000620219 H3BNG1 76 aa10.68□□□□□ -0.7
CPSF1-213ENST00000620219 C10orf25Q5T742 122 aa10.67□□□□□ -0.7
CPSF1-213ENST00000620219 CARD19Q96LW7 228 aa10.66□□□□□ -0.7
CPSF1-213ENST00000620219 LINC01556Q5JQF7 62 aa10.66□□□□□ -0.7
CPSF1-213ENST00000620219 NTN5Q8WTR8 489 aaPredicted RBP10.66□□□□□ -0.7
CPSF1-213ENST00000620219 LY6G6CO95867 125 aa10.65□□□□□ -0.7
CPSF1-213ENST00000620219 FOXI1Q12951 378 aa10.65□□□□□ -0.7
CPSF1-213ENST00000620219 LINC01620Q4KN68 170 aa10.65□□□□□ -0.7
CPSF1-213ENST00000620219 USP17L23D6RBM5 183 aa10.64□□□□□ -0.71
CPSF1-213ENST00000620219 NUPR2A6NF83 97 aa10.64□□□□□ -0.71
CPSF1-213ENST00000620219 NHLRC4P0CG21 123 aaPredicted RBP10.63□□□□□ -0.71
CPSF1-213ENST00000620219 ANKRD29Q8N6D5 301 aa10.62□□□□□ -0.71
CPSF1-213ENST00000620219 Q6ZRU5 148 aa10.62□□□□□ -0.71
CPSF1-213ENST00000620219 TMEM126AQ9H061 195 aa10.61□□□□□ -0.71
CPSF1-213ENST00000620219 LINC00337Q8N6G1 96 aa10.59□□□□□ -0.71
CPSF1-213ENST00000620219 LAMTOR3Q9UHA4 124 aa10.59□□□□□ -0.71
CPSF1-213ENST00000620219 TRBV30A0A0K0K1B3 111 aa10.58□□□□□ -0.72
CPSF1-213ENST00000620219 SMIM11BQ8TCY0 68 aa10.58□□□□□ -0.72
CPSF1-213ENST00000620219 IGKV2-28A0A075B6P5 120 aa10.58□□□□□ -0.72
CPSF1-213ENST00000620219 IGKV2D-28P01615 120 aa10.58□□□□□ -0.72
CPSF1-213ENST00000620219 BAALC-AS2P0C853 105 aa10.58□□□□□ -0.72
CPSF1-213ENST00000620219 FAM19A5Q7Z5A7 132 aaPredicted RBP10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 153.7 ms