RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 S100A2P29034 98 aa9.63□□□□□ -0.87
LIG1-219ENST00000600055 GAGE2BQ13066 116 aa9.63□□□□□ -0.87
LIG1-219ENST00000600055 IFI27L1Q96BM0 104 aa9.63□□□□□ -0.87
LIG1-219ENST00000600055 TINCRA0A1B0GVN0 87 aa9.62□□□□□ -0.87
LIG1-219ENST00000600055 F8WDY8 70 aa9.62□□□□□ -0.87
LIG1-219ENST00000600055 PLA2G1BP04054 148 aaKnown RBP9.62□□□□□ -0.87
LIG1-219ENST00000600055 LINC00310P59036 64 aa9.62□□□□□ -0.87
LIG1-219ENST00000600055 C2orf82Q6UX34 121 aa9.62□□□□□ -0.87
LIG1-219ENST00000600055 LINC00469Q8N7U9 141 aa9.62□□□□□ -0.87
LIG1-219ENST00000600055 STPG4Q8N801 248 aa9.62□□□□□ -0.87
LIG1-219ENST00000600055 MRPL35Q9NZE8 188 aaKnown RBP9.62□□□□□ -0.87
LIG1-219ENST00000600055 PLAC8Q9NZF1 115 aa9.62□□□□□ -0.87
LIG1-219ENST00000600055 TOMM7Q9P0U1 55 aa9.62□□□□□ -0.87
LIG1-219ENST00000600055 C6orf48Q9UBA6 75 aa9.62□□□□□ -0.87
LIG1-219ENST00000600055 NUPR1O60356 82 aa9.61□□□□□ -0.87
LIG1-219ENST00000600055 PTTG1IPP53801 180 aa9.61□□□□□ -0.87
LIG1-219ENST00000600055 KRTAP10-4P60372 401 aaPredicted RBP9.61□□□□□ -0.87
LIG1-219ENST00000600055 RNF151Q2KHN1 245 aa9.61□□□□□ -0.87
LIG1-219ENST00000600055 PKIGQ9Y2B9 76 aa9.61□□□□□ -0.87
LIG1-219ENST00000600055 FABP4P15090 132 aa9.6□□□□□ -0.87
LIG1-219ENST00000600055 RPL18AQ02543 176 aaKnown RBP9.6□□□□□ -0.87
LIG1-219ENST00000600055 MAP1LC3CQ9BXW4 147 aa9.6□□□□□ -0.87
LIG1-219ENST00000600055 IGLV5-45A0A087WSX0 123 aa9.59□□□□□ -0.87
LIG1-219ENST00000600055 SMIM1B2RUZ4 78 aa9.59□□□□□ -0.87
LIG1-219ENST00000600055 PRSS2P07478 247 aa9.59□□□□□ -0.87
LIG1-219ENST00000600055 LINC00474Q9P2X8 69 aa9.59□□□□□ -0.87
LIG1-219ENST00000600055 TRAV12-1A0A0B4J245 112 aa9.58□□□□□ -0.88
LIG1-219ENST00000600055 SPINK8P0C7L1 97 aa9.58□□□□□ -0.88
LIG1-219ENST00000600055 IGLC3P0DOY3 106 aa9.58□□□□□ -0.88
LIG1-219ENST00000600055 RPL37AP61513 92 aaKnown RBP9.58□□□□□ -0.88
LIG1-219ENST00000600055 C6orf226Q5I0X4 101 aa9.58□□□□□ -0.88
LIG1-219ENST00000600055 Q8IZM0 81 aa9.58□□□□□ -0.88
LIG1-219ENST00000600055 C9orf116Q5BN46 136 aaPredicted RBP9.57□□□□□ -0.88
LIG1-219ENST00000600055 SRRM2Q9UQ35 2752 aaKnown RBP9.56□□□□□ -0.88
LIG1-219ENST00000600055 A0A1W2PNN7 141 aa9.56□□□□□ -0.88
LIG1-219ENST00000600055 AKR1D1P51857 326 aa9.56□□□□□ -0.88
LIG1-219ENST00000600055 CKS1BP61024 79 aa9.56□□□□□ -0.88
LIG1-219ENST00000600055 SNRPEP62304 92 aaKnown RBP9.56□□□□□ -0.88
LIG1-219ENST00000600055 Q6ZRP5 223 aa9.56□□□□□ -0.88
LIG1-219ENST00000600055 TRBV30A0A0K0K1B3 111 aa9.55□□□□□ -0.88
LIG1-219ENST00000600055 C5orf52A6NGY3 159 aa9.55□□□□□ -0.88
LIG1-219ENST00000600055 TLX1NBP0CAT3 122 aa9.55□□□□□ -0.88
LIG1-219ENST00000600055 HIST3H2BBQ8N257 126 aa9.55□□□□□ -0.88
LIG1-219ENST00000600055 CHTOPQ9Y3Y2 248 aaKnown RBP9.55□□□□□ -0.88
LIG1-219ENST00000600055 H3BRM9 83 aa9.54□□□□□ -0.88
LIG1-219ENST00000600055 ZNF22P17026 224 aaPredicted RBP9.54□□□□□ -0.88
LIG1-219ENST00000600055 GAGE2EQ4V326 116 aa9.54□□□□□ -0.88
LIG1-219ENST00000600055 COX7B2Q8TF08 81 aa9.54□□□□□ -0.88
LIG1-219ENST00000600055 GAGE2DQ9UEU5 116 aa9.54□□□□□ -0.88
LIG1-219ENST00000600055 C20orf202A1L168 122 aa9.53□□□□□ -0.88
LIG1-219ENST00000600055 C11orf86A6NJI1 115 aa9.53□□□□□ -0.88
LIG1-219ENST00000600055 H0Y8G0 127 aa9.53□□□□□ -0.88
LIG1-219ENST00000600055 PET117Q6UWS5 81 aa9.53□□□□□ -0.88
LIG1-219ENST00000600055 F8VRH5 84 aa9.52□□□□□ -0.89
LIG1-219ENST00000600055 SYS1-DBNDD2H3BUS1 97 aa9.52□□□□□ -0.89
LIG1-219ENST00000600055 PLNP26678 52 aa9.52□□□□□ -0.89
LIG1-219ENST00000600055 HNRNPA3P51991 378 aaKnown RBP9.52□□□□□ -0.89
LIG1-219ENST00000600055 C7orf33Q8WU49 177 aa9.52□□□□□ -0.89
LIG1-219ENST00000600055 TMA7Q9Y2S6 64 aaKnown RBP9.52□□□□□ -0.89
LIG1-219ENST00000600055 FAM168BA1KXE4 195 aa9.51□□□□□ -0.89
LIG1-219ENST00000600055 HIST1H2BLQ99880 126 aa9.51□□□□□ -0.89
LIG1-219ENST00000600055 NDUFC2-KCTD14E9PQ53 114 aa9.5□□□□□ -0.89
LIG1-219ENST00000600055 CXCL5P42830 114 aa9.5□□□□□ -0.89
LIG1-219ENST00000600055 KRTDAPP60985 99 aa9.5□□□□□ -0.89
LIG1-219ENST00000600055 TMEM170BQ5T4T1 132 aa9.5□□□□□ -0.89
LIG1-219ENST00000600055 IGLV5-39A0A0G2JS06 123 aa9.49□□□□□ -0.89
LIG1-219ENST00000600055 ODF1Q14990 250 aa9.49□□□□□ -0.89
LIG1-219ENST00000600055 C9orf129Q5T035 196 aaKnown RBP9.49□□□□□ -0.89
LIG1-219ENST00000600055 PHF5AQ7RTV0 110 aaKnown RBP9.49□□□□□ -0.89
LIG1-219ENST00000600055 DPM2O94777 84 aa9.48□□□□□ -0.89
LIG1-219ENST00000600055 C3orf79P0CE67 100 aa9.48□□□□□ -0.89
LIG1-219ENST00000600055 KRTAP7-1Q8IUC3 87 aa9.48□□□□□ -0.89
LIG1-219ENST00000600055 IGKCP01834 107 aa9.47□□□□□ -0.89
LIG1-219ENST00000600055 FAM19A5Q7Z5A7 132 aaPredicted RBP9.47□□□□□ -0.89
LIG1-219ENST00000600055 PKHD1L1Q86WI1 4243 aa9.46□□□□□ -0.89
LIG1-219ENST00000600055 PRR3P79522 188 aaKnown RBP9.46□□□□□ -0.9
LIG1-219ENST00000600055 LINC01545Q5VT33 79 aa9.46□□□□□ -0.9
LIG1-219ENST00000600055 XAGE1AQ9HD64 81 aa9.46□□□□□ -0.9
LIG1-219ENST00000600055 FLG2Q5D862 2391 aaPredicted RBP9.46□□□□□ -0.9
LIG1-219ENST00000600055 MYCBP2O75592 4640 aa9.46□□□□□ -0.9
LIG1-219ENST00000600055 HERVK_113P61574 105 aa9.45□□□□□ -0.9
LIG1-219ENST00000600055 TMEM223A0PJW6 202 aa9.44□□□□□ -0.9
LIG1-219ENST00000600055 SERTAD4-AS1Q5TG53 156 aa9.42□□□□□ -0.9
LIG1-219ENST00000600055 SFTA2Q6UW10 78 aa9.42□□□□□ -0.9
LIG1-219ENST00000600055 KRTAP11-1Q8IUC1 163 aa9.42□□□□□ -0.9
LIG1-219ENST00000600055 ZNF625Q96I27 306 aaPredicted RBP9.42□□□□□ -0.9
LIG1-219ENST00000600055 M0QXV9 152 aa9.41□□□□□ -0.9
LIG1-219ENST00000600055 SCGB1D1O95968 90 aa9.41□□□□□ -0.9
LIG1-219ENST00000600055 PFN2P35080 140 aa9.41□□□□□ -0.9
LIG1-219ENST00000600055 PMCHL2Q9BQD1 86 aa9.41□□□□□ -0.9
LIG1-219ENST00000600055 PSORS1C2Q9UIG4 136 aa9.41□□□□□ -0.9
LIG1-219ENST00000600055 KRTAP29-1A8MX34 341 aaPredicted RBP9.39□□□□□ -0.91
LIG1-219ENST00000600055 HSBP1L1C9JCN9 74 aa9.39□□□□□ -0.91
LIG1-219ENST00000600055 PLEKHB2Q96CS7 222 aa9.39□□□□□ -0.91
LIG1-219ENST00000600055 ERG28Q9UKR5 140 aa9.38□□□□□ -0.91
LIG1-219ENST00000600055 C22orf24Q9Y442 160 aa9.38□□□□□ -0.91
LIG1-219ENST00000600055 C1orf137Q5JT78 98 aa9.37□□□□□ -0.91
LIG1-219ENST00000600055 LRP1Q07954 4544 aaKnown RBP9.37□□□□□ -0.91
LIG1-219ENST00000600055 FAT3Q8TDW7 4589 aa9.36□□□□□ -0.91
LIG1-219ENST00000600055 J3QL48 77 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 137.2 ms