RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 Q6ZRP5 223 aa10.08□□□□□ -0.8
TRIM28-213ENST00000598355 LRP1Q07954 4544 aaKnown RBP10.08□□□□□ -0.8
TRIM28-213ENST00000598355 A0A1W2PNN7 141 aa10.07□□□□□ -0.8
TRIM28-213ENST00000598355 IGLC3P0DOY3 106 aa10.06□□□□□ -0.8
TRIM28-213ENST00000598355 PRR3P79522 188 aaKnown RBP10.06□□□□□ -0.8
TRIM28-213ENST00000598355 LINC00469Q8N7U9 141 aa10.06□□□□□ -0.8
TRIM28-213ENST00000598355 PMCHL1Q16048 86 aa10.05□□□□□ -0.8
TRIM28-213ENST00000598355 C9orf116Q5BN46 136 aaPredicted RBP10.05□□□□□ -0.8
TRIM28-213ENST00000598355 CHCHD1Q96BP2 118 aaKnown RBP10.05□□□□□ -0.8
TRIM28-213ENST00000598355 PACRGQ96M98 296 aaPredicted RBP10.05□□□□□ -0.8
TRIM28-213ENST00000598355 FAT3Q8TDW7 4589 aa10.04□□□□□ -0.8
TRIM28-213ENST00000598355 NDUFC2-KCTD14E9PQ53 114 aa10.04□□□□□ -0.8
TRIM28-213ENST00000598355 PRSS2P07478 247 aa10.04□□□□□ -0.8
TRIM28-213ENST00000598355 CXCL5P42830 114 aa10.04□□□□□ -0.8
TRIM28-213ENST00000598355 TOMM7Q9P0U1 55 aa10.04□□□□□ -0.8
TRIM28-213ENST00000598355 HERC1Q15751 4861 aa10.04□□□□□ -0.8
TRIM28-213ENST00000598355 ATP5LO75964 103 aa10.03□□□□□ -0.8
TRIM28-213ENST00000598355 F8VRH5 84 aa10.02□□□□□ -0.81
TRIM28-213ENST00000598355 OXTP01178 125 aa10.02□□□□□ -0.81
TRIM28-213ENST00000598355 C6orf226Q5I0X4 101 aa10.02□□□□□ -0.81
TRIM28-213ENST00000598355 KRTAP7-1Q8IUC3 87 aa10.02□□□□□ -0.81
TRIM28-213ENST00000598355 IGLV5-39A0A0G2JS06 123 aa10.01□□□□□ -0.81
TRIM28-213ENST00000598355 COLCA2A8K830 154 aa10.01□□□□□ -0.81
TRIM28-213ENST00000598355 TRGC2P03986 189 aa10.01□□□□□ -0.81
TRIM28-213ENST00000598355 CKS1BP61024 79 aa10.01□□□□□ -0.81
TRIM28-213ENST00000598355 ZNF22P17026 224 aaPredicted RBP10□□□□□ -0.81
TRIM28-213ENST00000598355 LINC00310P59036 64 aa10□□□□□ -0.81
TRIM28-213ENST00000598355 COX7B2Q8TF08 81 aa10□□□□□ -0.81
TRIM28-213ENST00000598355 FAM168BA1KXE4 195 aa9.99□□□□□ -0.81
TRIM28-213ENST00000598355 SPINK8P0C7L1 97 aa9.99□□□□□ -0.81
TRIM28-213ENST00000598355 C9orf129Q5T035 196 aaKnown RBP9.99□□□□□ -0.81
TRIM28-213ENST00000598355 H3BRM9 83 aa9.98□□□□□ -0.81
TRIM28-213ENST00000598355 ODF1Q14990 250 aa9.98□□□□□ -0.81
TRIM28-213ENST00000598355 GAGE2EQ4V326 116 aa9.98□□□□□ -0.81
TRIM28-213ENST00000598355 GAGE2DQ9UEU5 116 aa9.98□□□□□ -0.81
TRIM28-213ENST00000598355 TRAV12-1A0A0B4J245 112 aa9.97□□□□□ -0.81
TRIM28-213ENST00000598355 C11orf86A6NJI1 115 aa9.97□□□□□ -0.81
TRIM28-213ENST00000598355 PHF5AQ7RTV0 110 aaKnown RBP9.97□□□□□ -0.81
TRIM28-213ENST00000598355 J3QL48 77 aa9.96□□□□□ -0.82
TRIM28-213ENST00000598355 NDUFA6P56556 154 aa9.96□□□□□ -0.82
TRIM28-213ENST00000598355 BAGE3Q86Y29 109 aa9.96□□□□□ -0.82
TRIM28-213ENST00000598355 IFI27L1Q96BM0 104 aa9.96□□□□□ -0.82
TRIM28-213ENST00000598355 HSBP1O75506 76 aa9.95□□□□□ -0.82
TRIM28-213ENST00000598355 SRSF9Q13242 221 aaKnown RBP eCLIP9.95□□□□□ -0.82
TRIM28-213ENST00000598355 FAM19A5Q7Z5A7 132 aaPredicted RBP9.95□□□□□ -0.82
TRIM28-213ENST00000598355 PSORS1C2Q9UIG4 136 aa9.95□□□□□ -0.82
TRIM28-213ENST00000598355 SERF1AO75920 110 aa9.94□□□□□ -0.82
TRIM28-213ENST00000598355 KRTAP11-1Q8IUC1 163 aa9.94□□□□□ -0.82
TRIM28-213ENST00000598355 M0QXV9 152 aa9.93□□□□□ -0.82
TRIM28-213ENST00000598355 MT1HL1P0DM35 61 aa9.93□□□□□ -0.82
TRIM28-213ENST00000598355 FAM19A2Q8N3H0 131 aa9.93□□□□□ -0.82
TRIM28-213ENST00000598355 CHTOPQ9Y3Y2 248 aaKnown RBP9.93□□□□□ -0.82
TRIM28-213ENST00000598355 SPINK6Q6UWN8 80 aa9.92□□□□□ -0.82
TRIM28-213ENST00000598355 SERTAD4-AS1Q5TG53 156 aa9.91□□□□□ -0.82
TRIM28-213ENST00000598355 XAGE1AQ9HD64 81 aa9.91□□□□□ -0.82
TRIM28-213ENST00000598355 SCO1O75880 301 aa9.9□□□□□ -0.82
TRIM28-213ENST00000598355 TMEM170BQ5T4T1 132 aa9.9□□□□□ -0.82
TRIM28-213ENST00000598355 TMEM223A0PJW6 202 aa9.89□□□□□ -0.83
TRIM28-213ENST00000598355 NUPR1O60356 82 aa9.89□□□□□ -0.83
TRIM28-213ENST00000598355 SFTA2Q6UW10 78 aa9.89□□□□□ -0.83
TRIM28-213ENST00000598355 ZNF625Q96I27 306 aaPredicted RBP9.89□□□□□ -0.83
TRIM28-213ENST00000598355 TP73-AS1Q9UF72 201 aa9.89□□□□□ -0.83
TRIM28-213ENST00000598355 PLA2G2DQ9UNK4 145 aa9.89□□□□□ -0.83
TRIM28-213ENST00000598355 TNXBP22105 4242 aa9.88□□□□□ -0.83
TRIM28-213ENST00000598355 LEPROTL1O95214 131 aa9.88□□□□□ -0.83
TRIM28-213ENST00000598355 C1orf137Q5JT78 98 aa9.87□□□□□ -0.83
TRIM28-213ENST00000598355 IGLV5-37A0A075B6J1 123 aa9.86□□□□□ -0.83
TRIM28-213ENST00000598355 LINC01600Q96MT4 127 aa9.86□□□□□ -0.83
TRIM28-213ENST00000598355 C22orf24Q9Y442 160 aa9.86□□□□□ -0.83
TRIM28-213ENST00000598355 HIST1H2BKO60814 126 aa9.85□□□□□ -0.83
TRIM28-213ENST00000598355 IGLV7-43P04211 117 aa9.85□□□□□ -0.83
TRIM28-213ENST00000598355 HIST1H2BJP06899 126 aa9.85□□□□□ -0.83
TRIM28-213ENST00000598355 HIST1H2BOP23527 126 aa9.85□□□□□ -0.83
TRIM28-213ENST00000598355 HIST1H2BBP33778 126 aa9.85□□□□□ -0.83
TRIM28-213ENST00000598355 HIST1H2BDP58876 126 aa9.85□□□□□ -0.83
TRIM28-213ENST00000598355 HIST1H2BCP62807 126 aa9.85□□□□□ -0.83
TRIM28-213ENST00000598355 COX17Q14061 63 aa9.85□□□□□ -0.83
TRIM28-213ENST00000598355 HIST2H2BEQ16778 126 aa9.85□□□□□ -0.83
TRIM28-213ENST00000598355 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.85□□□□□ -0.83
TRIM28-213ENST00000598355 HIST1H2BHQ93079 126 aa9.85□□□□□ -0.83
TRIM28-213ENST00000598355 HIST1H2BNQ99877 126 aa9.85□□□□□ -0.83
TRIM28-213ENST00000598355 HIST1H2BMQ99879 126 aa9.85□□□□□ -0.83
TRIM28-213ENST00000598355 ERG28Q9UKR5 140 aa9.85□□□□□ -0.83
TRIM28-213ENST00000598355 HSPB8Q9UJY1 196 aa9.84□□□□□ -0.83
TRIM28-213ENST00000598355 UBE2BP63146 152 aa9.83□□□□□ -0.84
TRIM28-213ENST00000598355 REG3GQ6UW15 175 aa9.83□□□□□ -0.84
TRIM28-213ENST00000598355 MRPL55Q7Z7F7 128 aaKnown RBP9.83□□□□□ -0.84
TRIM28-213ENST00000598355 LBHQ53QV2 105 aaPredicted RBP9.82□□□□□ -0.84
TRIM28-213ENST00000598355 PFN2P35080 140 aa9.81□□□□□ -0.84
TRIM28-213ENST00000598355 SND1-IT1Q9HBX3 110 aa9.81□□□□□ -0.84
TRIM28-213ENST00000598355 PLNP26678 52 aa9.8□□□□□ -0.84
TRIM28-213ENST00000598355 H0Y8G0 127 aa9.79□□□□□ -0.84
TRIM28-213ENST00000598355 VPREB1P12018 145 aa9.79□□□□□ -0.84
TRIM28-213ENST00000598355 FABP4P15090 132 aa9.79□□□□□ -0.84
TRIM28-213ENST00000598355 H0Y9J4 135 aa9.78□□□□□ -0.84
TRIM28-213ENST00000598355 KRTAP10-8P60410 259 aa9.78□□□□□ -0.84
TRIM28-213ENST00000598355 COA6Q5JTJ3 125 aaKnown RBP9.78□□□□□ -0.84
TRIM28-213ENST00000598355 DIRC1Q969H9 104 aa9.78□□□□□ -0.84
TRIM28-213ENST00000598355 LINC00167Q96N53 147 aa9.78□□□□□ -0.84
TRIM28-213ENST00000598355 DPM2O94777 84 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms