RNA–Protein interactions for RNA: ENST00000595726.1

SHKBP1-208, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 684 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-208ENST00000595726 TMEM238LA0A1B0GVL6 79 aa8.29□□□□□ -1.08
SHKBP1-208ENST00000595726 NDUFA1O15239 70 aa8.29□□□□□ -1.08
SHKBP1-208ENST00000595726 FABP9Q0Z7S8 132 aa8.29□□□□□ -1.08
SHKBP1-208ENST00000595726 KIAA0087Q14695 138 aa8.29□□□□□ -1.08
SHKBP1-208ENST00000595726 SNAPINO95295 136 aa8.28□□□□□ -1.08
SHKBP1-208ENST00000595726 RPL18AQ02543 176 aaKnown RBP8.28□□□□□ -1.08
SHKBP1-208ENST00000595726 C1orf137Q5JT78 98 aa8.28□□□□□ -1.08
SHKBP1-208ENST00000595726 PAPPA-AS1Q5QFB9 102 aa8.28□□□□□ -1.08
SHKBP1-208ENST00000595726 C10orf25Q5T742 122 aa8.28□□□□□ -1.08
SHKBP1-208ENST00000595726 ERASQ7Z444 233 aa8.28□□□□□ -1.08
SHKBP1-208ENST00000595726 LINC01561Q8N1V8 128 aa8.28□□□□□ -1.08
SHKBP1-208ENST00000595726 SVBPQ8N300 66 aa8.28□□□□□ -1.08
SHKBP1-208ENST00000595726 UNQ6190/PRO20217Q6UXQ8 127 aa8.27□□□□□ -1.09
SHKBP1-208ENST00000595726 SCGB3A1Q96QR1 104 aa8.27□□□□□ -1.09
SHKBP1-208ENST00000595726 C6orf48Q9UBA6 75 aa8.27□□□□□ -1.09
SHKBP1-208ENST00000595726 FA2HQ7L5A8 372 aa8.26□□□□□ -1.09
SHKBP1-208ENST00000595726 MUC17Q685J3 4493 aa8.26□□□□□ -1.09
SHKBP1-208ENST00000595726 LINC01549A6NIU2 74 aa8.25□□□□□ -1.09
SHKBP1-208ENST00000595726 TLX1NBP0CAT3 122 aa8.25□□□□□ -1.09
SHKBP1-208ENST00000595726 HERVK_113P63121 156 aa8.25□□□□□ -1.09
SHKBP1-208ENST00000595726 SEC11AP67812 179 aa8.25□□□□□ -1.09
SHKBP1-208ENST00000595726 DIRC1Q969H9 104 aa8.25□□□□□ -1.09
SHKBP1-208ENST00000595726 SMCO4Q9NRQ5 59 aa8.25□□□□□ -1.09
SHKBP1-208ENST00000595726 TRAPPC1Q9Y5R8 145 aa8.25□□□□□ -1.09
SHKBP1-208ENST00000595726 C9orf116Q5BN46 136 aaPredicted RBP8.24□□□□□ -1.09
SHKBP1-208ENST00000595726 C2orf82Q6UX34 121 aa8.24□□□□□ -1.09
SHKBP1-208ENST00000595726 PHF5AQ7RTV0 110 aaKnown RBP8.24□□□□□ -1.09
SHKBP1-208ENST00000595726 C18orf32Q8TCD1 76 aa8.24□□□□□ -1.09
SHKBP1-208ENST00000595726 CDKN2A-AS1Q9UH64 79 aa8.24□□□□□ -1.09
SHKBP1-208ENST00000595726 TRBV30A0A0K0K1B3 111 aa8.23□□□□□ -1.09
SHKBP1-208ENST00000595726 TSPAN13O95857 204 aa8.23□□□□□ -1.09
SHKBP1-208ENST00000595726 LCE2DQ5TA82 110 aaPredicted RBP8.23□□□□□ -1.09
SHKBP1-208ENST00000595726 Q8IZM0 81 aa8.23□□□□□ -1.09
SHKBP1-208ENST00000595726 URB1-AS1Q96HZ7 61 aa8.23□□□□□ -1.09
SHKBP1-208ENST00000595726 YPEL4Q96NS1 127 aa8.23□□□□□ -1.09
SHKBP1-208ENST00000595726 GEMIN7Q9H840 131 aaKnown RBP8.23□□□□□ -1.09
SHKBP1-208ENST00000595726 IGLV1-50A0A075B6I6 118 aa8.22□□□□□ -1.09
SHKBP1-208ENST00000595726 A0A096LNJ9 63 aa8.22□□□□□ -1.09
SHKBP1-208ENST00000595726 H0Y9J4 135 aa8.22□□□□□ -1.09
SHKBP1-208ENST00000595726 IGLV7-43P04211 117 aa8.22□□□□□ -1.09
SHKBP1-208ENST00000595726 KRTAP1-4P0C5Y4 121 aa8.22□□□□□ -1.09
SHKBP1-208ENST00000595726 KRTAP3-3Q9BYR6 98 aa8.22□□□□□ -1.09
SHKBP1-208ENST00000595726 KRTAP3-2Q9BYR7 98 aa8.22□□□□□ -1.09
SHKBP1-208ENST00000595726 TOMM7Q9P0U1 55 aa8.22□□□□□ -1.09
SHKBP1-208ENST00000595726 TINCRA0A1B0GVN0 87 aa8.21□□□□□ -1.1
SHKBP1-208ENST00000595726 PRSS2P07478 247 aa8.21□□□□□ -1.1
SHKBP1-208ENST00000595726 KRTAP11-1Q8IUC1 163 aa8.21□□□□□ -1.1
SHKBP1-208ENST00000595726 LINC00469Q8N7U9 141 aa8.21□□□□□ -1.1
SHKBP1-208ENST00000595726 PACRGQ96M98 296 aaPredicted RBP8.21□□□□□ -1.1
SHKBP1-208ENST00000595726 IGLV5-45A0A087WSX0 123 aa8.2□□□□□ -1.1
SHKBP1-208ENST00000595726 FAM168BA1KXE4 195 aa8.2□□□□□ -1.1
SHKBP1-208ENST00000595726 SMIM1B2RUZ4 78 aa8.2□□□□□ -1.1
SHKBP1-208ENST00000595726 NDUFC2-KCTD14E9PQ53 114 aa8.2□□□□□ -1.1
SHKBP1-208ENST00000595726 PMVKQ15126 192 aa8.2□□□□□ -1.1
SHKBP1-208ENST00000595726 GAGE2EQ4V326 116 aa8.2□□□□□ -1.1
SHKBP1-208ENST00000595726 CST9LQ9H4G1 147 aa8.2□□□□□ -1.1
SHKBP1-208ENST00000595726 GAGE2DQ9UEU5 116 aa8.2□□□□□ -1.1
SHKBP1-208ENST00000595726 LINC00614P0C842 121 aa8.19□□□□□ -1.1
SHKBP1-208ENST00000595726 CKS1BP61024 79 aa8.19□□□□□ -1.1
SHKBP1-208ENST00000595726 C6orf226Q5I0X4 101 aa8.19□□□□□ -1.1
SHKBP1-208ENST00000595726 HBDP02042 147 aa8.18□□□□□ -1.1
SHKBP1-208ENST00000595726 PMCHL1Q16048 86 aa8.18□□□□□ -1.1
SHKBP1-208ENST00000595726 CBLN2Q8IUK8 224 aa8.18□□□□□ -1.1
SHKBP1-208ENST00000595726 C21orf62-AS1Q17RA5 79 aa8.17□□□□□ -1.1
SHKBP1-208ENST00000595726 FAM19A5Q7Z5A7 132 aaPredicted RBP8.17□□□□□ -1.1
SHKBP1-208ENST00000595726 KRTAP7-1Q8IUC3 87 aa8.17□□□□□ -1.1
SHKBP1-208ENST00000595726 F8VRH5 84 aa8.16□□□□□ -1.1
SHKBP1-208ENST00000595726 SPINK8P0C7L1 97 aa8.16□□□□□ -1.1
SHKBP1-208ENST00000595726 CXCL5P42830 114 aa8.16□□□□□ -1.1
SHKBP1-208ENST00000595726 RAB5BP61020 215 aa8.16□□□□□ -1.1
SHKBP1-208ENST00000595726 PDZD11Q5EBL8 140 aa8.16□□□□□ -1.1
SHKBP1-208ENST00000595726 C9orf129Q5T035 196 aaKnown RBP8.16□□□□□ -1.1
SHKBP1-208ENST00000595726 IGLC3P0DOY3 106 aa8.15□□□□□ -1.1
SHKBP1-208ENST00000595726 COX7B2Q8TF08 81 aa8.15□□□□□ -1.1
SHKBP1-208ENST00000595726 M0QXV9 152 aa8.14□□□□□ -1.11
SHKBP1-208ENST00000595726 RPL13AP40429 203 aaKnown RBP8.13□□□□□ -1.11
SHKBP1-208ENST00000595726 NDUFA6P56556 154 aa8.13□□□□□ -1.11
SHKBP1-208ENST00000595726 H3BRM9 83 aa8.12□□□□□ -1.11
SHKBP1-208ENST00000595726 ATP5LO75964 103 aa8.12□□□□□ -1.11
SHKBP1-208ENST00000595726 ZNF22P17026 224 aaPredicted RBP8.12□□□□□ -1.11
SHKBP1-208ENST00000595726 CHCHD1Q96BP2 118 aaKnown RBP8.12□□□□□ -1.11
SHKBP1-208ENST00000595726 IGLV5-39A0A0G2JS06 123 aa8.11□□□□□ -1.11
SHKBP1-208ENST00000595726 XAGE1AQ9HD64 81 aa8.11□□□□□ -1.11
SHKBP1-208ENST00000595726 SCO1O75880 301 aa8.1□□□□□ -1.11
SHKBP1-208ENST00000595726 C11orf86A6NJI1 115 aa8.09□□□□□ -1.11
SHKBP1-208ENST00000595726 TRGC2P03986 189 aa8.09□□□□□ -1.11
SHKBP1-208ENST00000595726 UBE2BP63146 152 aa8.09□□□□□ -1.11
SHKBP1-208ENST00000595726 BAGE3Q86Y29 109 aa8.09□□□□□ -1.11
SHKBP1-208ENST00000595726 RETNLBQ9BQ08 111 aa8.09□□□□□ -1.11
SHKBP1-208ENST00000595726 CDIP1Q9H305 208 aa8.08□□□□□ -1.12
SHKBP1-208ENST00000595726 IFI27L1Q96BM0 104 aa8.07□□□□□ -1.12
SHKBP1-208ENST00000595726 CHTOPQ9Y3Y2 248 aaKnown RBP8.07□□□□□ -1.12
SHKBP1-208ENST00000595726 C22orf24Q9Y442 160 aa8.07□□□□□ -1.12
SHKBP1-208ENST00000595726 TRAV12-1A0A0B4J245 112 aa8.06□□□□□ -1.12
SHKBP1-208ENST00000595726 HSBP1O75506 76 aa8.06□□□□□ -1.12
SHKBP1-208ENST00000595726 TMEM170BQ5T4T1 132 aa8.06□□□□□ -1.12
SHKBP1-208ENST00000595726 FAM19A2Q8N3H0 131 aa8.06□□□□□ -1.12
SHKBP1-208ENST00000595726 LINC00310P59036 64 aa8.05□□□□□ -1.12
SHKBP1-208ENST00000595726 TP73-AS1Q9UF72 201 aa8.05□□□□□ -1.12
SHKBP1-208ENST00000595726 COLCA2A8K830 154 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms