RNA–Protein interactions for RNA: ENST00000594298.5

SHKBP1-203, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 716 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-203ENST00000594298 BAGE3Q86Y29 109 aa10.99□□□□□ -0.65
SHKBP1-203ENST00000594298 A0A096LNJ9 63 aa10.98□□□□□ -0.65
SHKBP1-203ENST00000594298 NDUFA6P56556 154 aa10.98□□□□□ -0.65
SHKBP1-203ENST00000594298 PRR3P79522 188 aaKnown RBP10.98□□□□□ -0.65
SHKBP1-203ENST00000594298 KIAA0087Q14695 138 aa10.98□□□□□ -0.65
SHKBP1-203ENST00000594298 LINC00469Q8N7U9 141 aa10.98□□□□□ -0.65
SHKBP1-203ENST00000594298 CDKN2A-AS1Q9UH64 79 aa10.98□□□□□ -0.65
SHKBP1-203ENST00000594298 PTTG1IPP53801 180 aa10.97□□□□□ -0.65
SHKBP1-203ENST00000594298 GAGE2BQ13066 116 aa10.97□□□□□ -0.65
SHKBP1-203ENST00000594298 PMCHL1Q16048 86 aa10.97□□□□□ -0.65
SHKBP1-203ENST00000594298 PDZD11Q5EBL8 140 aa10.97□□□□□ -0.65
SHKBP1-203ENST00000594298 C6orf226Q5I0X4 101 aa10.97□□□□□ -0.65
SHKBP1-203ENST00000594298 STPG4Q8N801 248 aa10.97□□□□□ -0.65
SHKBP1-203ENST00000594298 COLCA2A8K830 154 aa10.96□□□□□ -0.65
SHKBP1-203ENST00000594298 CKS1BP61024 79 aa10.96□□□□□ -0.65
SHKBP1-203ENST00000594298 UNQ6190/PRO20217Q6UXQ8 127 aa10.96□□□□□ -0.65
SHKBP1-203ENST00000594298 Q8IZM0 81 aa10.96□□□□□ -0.65
SHKBP1-203ENST00000594298 TOMM7Q9P0U1 55 aa10.96□□□□□ -0.65
SHKBP1-203ENST00000594298 LRP2P98164 4655 aa10.95□□□□□ -0.66
SHKBP1-203ENST00000594298 TRBV30A0A0K0K1B3 111 aa10.95□□□□□ -0.66
SHKBP1-203ENST00000594298 H3BRM9 83 aa10.95□□□□□ -0.66
SHKBP1-203ENST00000594298 RPL18AQ02543 176 aaKnown RBP10.95□□□□□ -0.66
SHKBP1-203ENST00000594298 IGLV5-45A0A087WSX0 123 aa10.94□□□□□ -0.66
SHKBP1-203ENST00000594298 HSBP1O75506 76 aa10.94□□□□□ -0.66
SHKBP1-203ENST00000594298 TLX1NBP0CAT3 122 aa10.93□□□□□ -0.66
SHKBP1-203ENST00000594298 C10orf25Q5T742 122 aa10.93□□□□□ -0.66
SHKBP1-203ENST00000594298 C6orf48Q9UBA6 75 aa10.93□□□□□ -0.66
SHKBP1-203ENST00000594298 RNF213Q63HN8 5207 aa10.92□□□□□ -0.66
SHKBP1-203ENST00000594298 CXCL5P42830 114 aa10.92□□□□□ -0.66
SHKBP1-203ENST00000594298 SPINK6Q6UWN8 80 aa10.92□□□□□ -0.66
SHKBP1-203ENST00000594298 C2orf82Q6UX34 121 aa10.92□□□□□ -0.66
SHKBP1-203ENST00000594298 IGLC3P0DOY3 106 aa10.91□□□□□ -0.66
SHKBP1-203ENST00000594298 SMIM1B2RUZ4 78 aa10.9□□□□□ -0.66
SHKBP1-203ENST00000594298 COX7B2Q8TF08 81 aa10.9□□□□□ -0.66
SHKBP1-203ENST00000594298 KRTAP10-8P60410 259 aa10.89□□□□□ -0.67
SHKBP1-203ENST00000594298 IFI27L1Q96BM0 104 aa10.89□□□□□ -0.67
SHKBP1-203ENST00000594298 TRAV12-1A0A0B4J245 112 aa10.88□□□□□ -0.67
SHKBP1-203ENST00000594298 NDUFC2-KCTD14E9PQ53 114 aa10.88□□□□□ -0.67
SHKBP1-203ENST00000594298 F8VRH5 84 aa10.88□□□□□ -0.67
SHKBP1-203ENST00000594298 SPINK8P0C7L1 97 aa10.88□□□□□ -0.67
SHKBP1-203ENST00000594298 SRSF9Q13242 221 aaKnown RBP eCLIP10.88□□□□□ -0.67
SHKBP1-203ENST00000594298 REG3GQ6UW15 175 aa10.88□□□□□ -0.67
SHKBP1-203ENST00000594298 CHTOPQ9Y3Y2 248 aaKnown RBP10.88□□□□□ -0.67
SHKBP1-203ENST00000594298 SCO1O75880 301 aa10.87□□□□□ -0.67
SHKBP1-203ENST00000594298 SERF1AO75920 110 aa10.87□□□□□ -0.67
SHKBP1-203ENST00000594298 GAGE2EQ4V326 116 aa10.87□□□□□ -0.67
SHKBP1-203ENST00000594298 Q6ZRP5 223 aa10.87□□□□□ -0.67
SHKBP1-203ENST00000594298 FAM19A2Q8N3H0 131 aa10.87□□□□□ -0.67
SHKBP1-203ENST00000594298 GAGE2DQ9UEU5 116 aa10.87□□□□□ -0.67
SHKBP1-203ENST00000594298 C9orf116Q5BN46 136 aaPredicted RBP10.86□□□□□ -0.67
SHKBP1-203ENST00000594298 LEPROTL1O95214 131 aa10.85□□□□□ -0.67
SHKBP1-203ENST00000594298 ZNF22P17026 224 aaPredicted RBP10.85□□□□□ -0.67
SHKBP1-203ENST00000594298 ODF1Q14990 250 aa10.85□□□□□ -0.67
SHKBP1-203ENST00000594298 A0A1W2PNN7 141 aa10.84□□□□□ -0.67
SHKBP1-203ENST00000594298 TMEM170BQ5T4T1 132 aa10.84□□□□□ -0.67
SHKBP1-203ENST00000594298 C11orf86A6NJI1 115 aa10.83□□□□□ -0.68
SHKBP1-203ENST00000594298 HSPB8Q9UJY1 196 aa10.83□□□□□ -0.68
SHKBP1-203ENST00000594298 IGLV5-39A0A0G2JS06 123 aa10.82□□□□□ -0.68
SHKBP1-203ENST00000594298 LINC00310P59036 64 aa10.81□□□□□ -0.68
SHKBP1-203ENST00000594298 SFTA2Q6UW10 78 aa10.8□□□□□ -0.68
SHKBP1-203ENST00000594298 S100A1P23297 94 aa10.79□□□□□ -0.68
SHKBP1-203ENST00000594298 NUPR1O60356 82 aa10.78□□□□□ -0.68
SHKBP1-203ENST00000594298 HIST1H2BKO60814 126 aa10.78□□□□□ -0.68
SHKBP1-203ENST00000594298 HIST1H2BJP06899 126 aa10.78□□□□□ -0.68
SHKBP1-203ENST00000594298 FABP4P15090 132 aa10.78□□□□□ -0.68
SHKBP1-203ENST00000594298 HIST1H2BOP23527 126 aa10.78□□□□□ -0.68
SHKBP1-203ENST00000594298 HIST1H2BBP33778 126 aa10.78□□□□□ -0.68
SHKBP1-203ENST00000594298 HIST1H2BDP58876 126 aa10.78□□□□□ -0.68
SHKBP1-203ENST00000594298 HIST1H2BCP62807 126 aa10.78□□□□□ -0.68
SHKBP1-203ENST00000594298 HIST2H2BEQ16778 126 aa10.78□□□□□ -0.68
SHKBP1-203ENST00000594298 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.78□□□□□ -0.68
SHKBP1-203ENST00000594298 HIST1H2BHQ93079 126 aa10.78□□□□□ -0.68
SHKBP1-203ENST00000594298 HIST1H2BNQ99877 126 aa10.78□□□□□ -0.68
SHKBP1-203ENST00000594298 HIST1H2BMQ99879 126 aa10.78□□□□□ -0.68
SHKBP1-203ENST00000594298 H0Y8G0 127 aa10.77□□□□□ -0.69
SHKBP1-203ENST00000594298 C9orf129Q5T035 196 aaKnown RBP10.77□□□□□ -0.69
SHKBP1-203ENST00000594298 FAM19A5Q7Z5A7 132 aaPredicted RBP10.77□□□□□ -0.69
SHKBP1-203ENST00000594298 TMEM223A0PJW6 202 aa10.76□□□□□ -0.69
SHKBP1-203ENST00000594298 FAM168BA1KXE4 195 aa10.76□□□□□ -0.69
SHKBP1-203ENST00000594298 PHF5AQ7RTV0 110 aaKnown RBP10.76□□□□□ -0.69
SHKBP1-203ENST00000594298 MAP1LC3CQ9BXW4 147 aa10.75□□□□□ -0.69
SHKBP1-203ENST00000594298 XAGE1AQ9HD64 81 aa10.75□□□□□ -0.69
SHKBP1-203ENST00000594298 M0QXV9 152 aa10.74□□□□□ -0.69
SHKBP1-203ENST00000594298 PLNP26678 52 aa10.74□□□□□ -0.69
SHKBP1-203ENST00000594298 COX17Q14061 63 aa10.73□□□□□ -0.69
SHKBP1-203ENST00000594298 PSORS1C2Q9UIG4 136 aa10.73□□□□□ -0.69
SHKBP1-203ENST00000594298 UBE2BP63146 152 aa10.72□□□□□ -0.69
SHKBP1-203ENST00000594298 LBHQ53QV2 105 aaPredicted RBP10.72□□□□□ -0.69
SHKBP1-203ENST00000594298 DPM2O94777 84 aa10.71□□□□□ -0.69
SHKBP1-203ENST00000594298 PFN2P35080 140 aa10.71□□□□□ -0.69
SHKBP1-203ENST00000594298 ERG28Q9UKR5 140 aa10.71□□□□□ -0.69
SHKBP1-203ENST00000594298 KRTAP7-1Q8IUC3 87 aa10.7□□□□□ -0.7
SHKBP1-203ENST00000594298 HERVK_113P61574 105 aa10.69□□□□□ -0.7
SHKBP1-203ENST00000594298 C1orf137Q5JT78 98 aa10.69□□□□□ -0.7
SHKBP1-203ENST00000594298 ZNF625Q96I27 306 aaPredicted RBP10.69□□□□□ -0.7
SHKBP1-203ENST00000594298 C22orf24Q9Y442 160 aa10.69□□□□□ -0.7
SHKBP1-203ENST00000594298 ATP6V1G1O75348 118 aa10.68□□□□□ -0.7
SHKBP1-203ENST00000594298 IGKCP01834 107 aa10.68□□□□□ -0.7
SHKBP1-203ENST00000594298 COA6Q5JTJ3 125 aaKnown RBP10.68□□□□□ -0.7
SHKBP1-203ENST00000594298 TP73-AS1Q9UF72 201 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms