RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 TLX1NBP0CAT3 122 aa9.51□□□□□ -0.89
UPF1-202ENST00000594243 IGLC3P0DOY3 106 aa9.51□□□□□ -0.89
UPF1-202ENST00000594243 RPL18AQ02543 176 aaKnown RBP9.51□□□□□ -0.89
UPF1-202ENST00000594243 C6orf48Q9UBA6 75 aa9.51□□□□□ -0.89
UPF1-202ENST00000594243 C2orf82Q6UX34 121 aa9.5□□□□□ -0.89
UPF1-202ENST00000594243 SMIM1B2RUZ4 78 aa9.49□□□□□ -0.89
UPF1-202ENST00000594243 CXCL5P42830 114 aa9.49□□□□□ -0.89
UPF1-202ENST00000594243 RPL37AP61513 92 aaKnown RBP9.49□□□□□ -0.89
UPF1-202ENST00000594243 FAM19A2Q8N3H0 131 aa9.49□□□□□ -0.89
UPF1-202ENST00000594243 IFI27L1Q96BM0 104 aa9.49□□□□□ -0.89
UPF1-202ENST00000594243 C7orf33Q8WU49 177 aa9.48□□□□□ -0.89
UPF1-202ENST00000594243 VPS13BQ7Z7G8 4022 aa9.48□□□□□ -0.89
UPF1-202ENST00000594243 HERC1Q15751 4861 aa9.47□□□□□ -0.89
UPF1-202ENST00000594243 TRAV12-1A0A0B4J245 112 aa9.47□□□□□ -0.89
UPF1-202ENST00000594243 F8VRH5 84 aa9.47□□□□□ -0.89
UPF1-202ENST00000594243 SERF1AO75920 110 aa9.47□□□□□ -0.89
UPF1-202ENST00000594243 SPINK8P0C7L1 97 aa9.47□□□□□ -0.89
UPF1-202ENST00000594243 COX7B2Q8TF08 81 aa9.47□□□□□ -0.89
UPF1-202ENST00000594243 CHTOPQ9Y3Y2 248 aaKnown RBP9.47□□□□□ -0.89
UPF1-202ENST00000594243 NDUFC2-KCTD14E9PQ53 114 aa9.46□□□□□ -0.9
UPF1-202ENST00000594243 LEPROTL1O95214 131 aa9.46□□□□□ -0.9
UPF1-202ENST00000594243 Q6ZRP5 223 aa9.46□□□□□ -0.9
UPF1-202ENST00000594243 ZNF22P17026 224 aaPredicted RBP9.45□□□□□ -0.9
UPF1-202ENST00000594243 LINC00310P59036 64 aa9.45□□□□□ -0.9
UPF1-202ENST00000594243 KRTAP10-4P60372 401 aaPredicted RBP9.45□□□□□ -0.9
UPF1-202ENST00000594243 A0A1W2PNN7 141 aa9.44□□□□□ -0.9
UPF1-202ENST00000594243 GAGE2EQ4V326 116 aa9.44□□□□□ -0.9
UPF1-202ENST00000594243 C9orf116Q5BN46 136 aaPredicted RBP9.44□□□□□ -0.9
UPF1-202ENST00000594243 TMEM170BQ5T4T1 132 aa9.44□□□□□ -0.9
UPF1-202ENST00000594243 GAGE2DQ9UEU5 116 aa9.44□□□□□ -0.9
UPF1-202ENST00000594243 C11orf86A6NJI1 115 aa9.43□□□□□ -0.9
UPF1-202ENST00000594243 NUPR1O60356 82 aa9.43□□□□□ -0.9
UPF1-202ENST00000594243 S100A1P23297 94 aa9.43□□□□□ -0.9
UPF1-202ENST00000594243 HSPB8Q9UJY1 196 aa9.43□□□□□ -0.9
UPF1-202ENST00000594243 IGLV5-39A0A0G2JS06 123 aa9.42□□□□□ -0.9
UPF1-202ENST00000594243 HIST1H2BKO60814 126 aa9.41□□□□□ -0.9
UPF1-202ENST00000594243 HIST1H2BJP06899 126 aa9.41□□□□□ -0.9
UPF1-202ENST00000594243 HIST1H2BOP23527 126 aa9.41□□□□□ -0.9
UPF1-202ENST00000594243 HIST1H2BBP33778 126 aa9.41□□□□□ -0.9
UPF1-202ENST00000594243 HIST1H2BDP58876 126 aa9.41□□□□□ -0.9
UPF1-202ENST00000594243 HIST1H2BCP62807 126 aa9.41□□□□□ -0.9
UPF1-202ENST00000594243 HIST2H2BEQ16778 126 aa9.41□□□□□ -0.9
UPF1-202ENST00000594243 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.41□□□□□ -0.9
UPF1-202ENST00000594243 HIST1H2BHQ93079 126 aa9.41□□□□□ -0.9
UPF1-202ENST00000594243 HIST1H2BNQ99877 126 aa9.41□□□□□ -0.9
UPF1-202ENST00000594243 HIST1H2BMQ99879 126 aa9.41□□□□□ -0.9
UPF1-202ENST00000594243 FABP4P15090 132 aa9.4□□□□□ -0.9
UPF1-202ENST00000594243 DMBT1Q9UGM3 2413 aaPredicted RBP9.4□□□□□ -0.91
UPF1-202ENST00000594243 MYCBP2O75592 4640 aa9.39□□□□□ -0.91
UPF1-202ENST00000594243 H0Y8G0 127 aa9.39□□□□□ -0.91
UPF1-202ENST00000594243 SFTA2Q6UW10 78 aa9.39□□□□□ -0.91
UPF1-202ENST00000594243 SRRM2Q9UQ35 2752 aaKnown RBP9.39□□□□□ -0.91
UPF1-202ENST00000594243 ODF1Q14990 250 aa9.38□□□□□ -0.91
UPF1-202ENST00000594243 TMEM223A0PJW6 202 aa9.37□□□□□ -0.91
UPF1-202ENST00000594243 FAM168BA1KXE4 195 aa9.37□□□□□ -0.91
UPF1-202ENST00000594243 C9orf129Q5T035 196 aaKnown RBP9.37□□□□□ -0.91
UPF1-202ENST00000594243 MAP1LC3CQ9BXW4 147 aa9.37□□□□□ -0.91
UPF1-202ENST00000594243 FLG2Q5D862 2391 aaPredicted RBP9.36□□□□□ -0.91
UPF1-202ENST00000594243 PHF5AQ7RTV0 110 aaKnown RBP9.36□□□□□ -0.91
UPF1-202ENST00000594243 FAM19A5Q7Z5A7 132 aaPredicted RBP9.36□□□□□ -0.91
UPF1-202ENST00000594243 PLNP26678 52 aa9.35□□□□□ -0.91
UPF1-202ENST00000594243 PRR3P79522 188 aaKnown RBP9.35□□□□□ -0.91
UPF1-202ENST00000594243 XAGE1AQ9HD64 81 aa9.35□□□□□ -0.91
UPF1-202ENST00000594243 ATP6V1G1O75348 118 aa9.34□□□□□ -0.91
UPF1-202ENST00000594243 COX17Q14061 63 aa9.34□□□□□ -0.91
UPF1-202ENST00000594243 M0QXV9 152 aa9.33□□□□□ -0.92
UPF1-202ENST00000594243 HNRNPA3P51991 378 aaKnown RBP9.33□□□□□ -0.92
UPF1-202ENST00000594243 DPM2O94777 84 aa9.32□□□□□ -0.92
UPF1-202ENST00000594243 PFN2P35080 140 aa9.32□□□□□ -0.92
UPF1-202ENST00000594243 COA6Q5JTJ3 125 aaKnown RBP9.32□□□□□ -0.92
UPF1-202ENST00000594243 KRTAP7-1Q8IUC3 87 aa9.32□□□□□ -0.92
UPF1-202ENST00000594243 ERG28Q9UKR5 140 aa9.32□□□□□ -0.92
UPF1-202ENST00000594243 KRTAP29-1A8MX34 341 aaPredicted RBP9.31□□□□□ -0.92
UPF1-202ENST00000594243 IGKCP01834 107 aa9.31□□□□□ -0.92
UPF1-202ENST00000594243 ZNF625Q96I27 306 aaPredicted RBP9.31□□□□□ -0.92
UPF1-202ENST00000594243 PSORS1C2Q9UIG4 136 aa9.31□□□□□ -0.92
UPF1-202ENST00000594243 OXTP01178 125 aa9.3□□□□□ -0.92
UPF1-202ENST00000594243 UBE2BP63146 152 aa9.3□□□□□ -0.92
UPF1-202ENST00000594243 LBHQ53QV2 105 aaPredicted RBP9.3□□□□□ -0.92
UPF1-202ENST00000594243 PLA2G2DQ9UNK4 145 aa9.3□□□□□ -0.92
UPF1-202ENST00000594243 C22orf24Q9Y442 160 aa9.3□□□□□ -0.92
UPF1-202ENST00000594243 SYS1-DBNDD2H3BUS1 97 aa9.29□□□□□ -0.92
UPF1-202ENST00000594243 HERVK_113P61574 105 aa9.29□□□□□ -0.92
UPF1-202ENST00000594243 SERTAD4-AS1Q5TG53 156 aa9.29□□□□□ -0.92
UPF1-202ENST00000594243 SPINK6Q6UWN8 80 aa9.29□□□□□ -0.92
UPF1-202ENST00000594243 PMCHL2Q9BQD1 86 aa9.29□□□□□ -0.92
UPF1-202ENST00000594243 J3QL48 77 aa9.28□□□□□ -0.92
UPF1-202ENST00000594243 HERV-K104P63124 156 aa9.28□□□□□ -0.92
UPF1-202ENST00000594243 C1orf137Q5JT78 98 aa9.28□□□□□ -0.92
UPF1-202ENST00000594243 TP73-AS1Q9UF72 201 aa9.28□□□□□ -0.92
UPF1-202ENST00000594243 MYMXA0A1B0GTQ4 84 aa9.27□□□□□ -0.93
UPF1-202ENST00000594243 LINC00587B1AMM8 73 aa9.27□□□□□ -0.93
UPF1-202ENST00000594243 LEPROTO15243 131 aa9.27□□□□□ -0.93
UPF1-202ENST00000594243 LINC00158P58513 81 aa9.27□□□□□ -0.93
UPF1-202ENST00000594243 PET117Q6UWS5 81 aa9.27□□□□□ -0.93
UPF1-202ENST00000594243 PLEKHB2Q96CS7 222 aa9.27□□□□□ -0.93
UPF1-202ENST00000594243 SRSF9Q13242 221 aaKnown RBP eCLIP9.26□□□□□ -0.93
UPF1-202ENST00000594243 MRPL55Q7Z7F7 128 aaKnown RBP9.26□□□□□ -0.93
UPF1-202ENST00000594243 SND1-IT1Q9HBX3 110 aa9.26□□□□□ -0.93
UPF1-202ENST00000594243 NDUFA12Q9UI09 145 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 115 ms