RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 C5orf38Q86SI9 138 aa1.69□□□□□ -2.14
VPS35-209ENST00000568642 OR2T35Q8NGX2 323 aa1.69□□□□□ -2.14
VPS35-209ENST00000568642 C10orf82Q8WW14 230 aa1.69□□□□□ -2.14
VPS35-209ENST00000568642 Q96M85 177 aa1.69□□□□□ -2.14
VPS35-209ENST00000568642 OR8B2Q96RD0 313 aa1.69□□□□□ -2.14
VPS35-209ENST00000568642 ATG5Q9H1Y0 275 aa1.69□□□□□ -2.14
VPS35-209ENST00000568642 NOP16Q9Y3C1 178 aaKnown RBP1.69□□□□□ -2.14
VPS35-209ENST00000568642 LHFPL6Q9Y693 200 aa1.69□□□□□ -2.14
VPS35-209ENST00000568642 USH2AO75445 5202 aa1.68□□□□□ -2.14
VPS35-209ENST00000568642 IGHV1-24A0A0C4DH33 117 aa1.68□□□□□ -2.14
VPS35-209ENST00000568642 TRBV7-7A0A0K0K1E9 115 aa1.68□□□□□ -2.14
VPS35-209ENST00000568642 A0A1W2PNM2 257 aa1.68□□□□□ -2.14
VPS35-209ENST00000568642 hADV29S1A0JD25 119 aa1.68□□□□□ -2.14
VPS35-209ENST00000568642 E7EUB6 86 aa1.68□□□□□ -2.14
VPS35-209ENST00000568642 LYNX1G3V0Z9 82 aa1.68□□□□□ -2.14
VPS35-209ENST00000568642 J3QLW9 94 aa1.68□□□□□ -2.14
VPS35-209ENST00000568642 CREBL2O60519 120 aaPredicted RBP1.68□□□□□ -2.14
VPS35-209ENST00000568642 UBL3O95164 117 aa1.68□□□□□ -2.14
VPS35-209ENST00000568642 SMR3BP02814 79 aaPredicted RBP1.68□□□□□ -2.14
VPS35-209ENST00000568642 IL4P05112 153 aa1.68□□□□□ -2.14
VPS35-209ENST00000568642 CCKP06307 115 aa1.68□□□□□ -2.14
VPS35-209ENST00000568642 PIRTP0C851 137 aa1.68□□□□□ -2.14
VPS35-209ENST00000568642 LYNX1P0DP58 116 aa1.68□□□□□ -2.14
VPS35-209ENST00000568642 CBLN1P23435 193 aa1.68□□□□□ -2.14
VPS35-209ENST00000568642 CKS2P33552 79 aa1.68□□□□□ -2.14
VPS35-209ENST00000568642 DSCR4P56555 118 aaPredicted RBP1.68□□□□□ -2.14
VPS35-209ENST00000568642 LYPD5Q6UWN5 251 aa1.68□□□□□ -2.14
VPS35-209ENST00000568642 ARPINQ7Z6K5 226 aa1.68□□□□□ -2.14
VPS35-209ENST00000568642 TSLPQ969D9 159 aa1.68□□□□□ -2.14
VPS35-209ENST00000568642 CST11Q9H112 138 aa1.68□□□□□ -2.14
VPS35-209ENST00000568642 TMEM242Q9NWH2 141 aa1.68□□□□□ -2.14
VPS35-209ENST00000568642 PRO2289Q9P1D8 64 aa1.68□□□□□ -2.14
VPS35-209ENST00000568642 NDUFA12Q9UI09 145 aa1.68□□□□□ -2.14
VPS35-209ENST00000568642 NACAE9PAV3 2078 aa1.68□□□□□ -2.14
VPS35-209ENST00000568642 IGLV10-54A0A075B6I4 117 aa1.67□□□□□ -2.14
VPS35-209ENST00000568642 IGLC7A0M8Q6 106 aa1.67□□□□□ -2.14
VPS35-209ENST00000568642 YPEL1O60688 119 aa1.67□□□□□ -2.14
VPS35-209ENST00000568642 KRTAP1-4P0C5Y4 121 aa1.67□□□□□ -2.14
VPS35-209ENST00000568642 ASAH2BP0C7U1 165 aa1.67□□□□□ -2.14
VPS35-209ENST00000568642 RHOHQ15669 191 aa1.67□□□□□ -2.14
VPS35-209ENST00000568642 Q1T7F1 81 aa1.67□□□□□ -2.14
VPS35-209ENST00000568642 ALKAL2Q6UX46 152 aa1.67□□□□□ -2.14
VPS35-209ENST00000568642 BRD3OSQ6XYD6 125 aa1.67□□□□□ -2.14
VPS35-209ENST00000568642 SLC25A26Q70HW3 274 aa1.67□□□□□ -2.14
VPS35-209ENST00000568642 DEFB108BQ8NET1 73 aa1.67□□□□□ -2.14
VPS35-209ENST00000568642 DEFB104AQ8WTQ1 72 aa1.67□□□□□ -2.14
VPS35-209ENST00000568642 RAB37Q96AX2 223 aa1.67□□□□□ -2.14
VPS35-209ENST00000568642 IGHV3-64A0A075B6Q5 118 aa1.66□□□□□ -2.14
VPS35-209ENST00000568642 TRAV40A0A0B4J280 105 aa1.66□□□□□ -2.14
VPS35-209ENST00000568642 A0A0J9YX75 114 aa1.66□□□□□ -2.14
VPS35-209ENST00000568642 MUC21A0A140T8X8 626 aa1.66□□□□□ -2.14
VPS35-209ENST00000568642 SMIM31A0A1B0GVY4 71 aa1.66□□□□□ -2.14
VPS35-209ENST00000568642 C17orf112F2Z3M2 114 aa1.66□□□□□ -2.14
VPS35-209ENST00000568642 M0R233 179 aa1.66□□□□□ -2.14
VPS35-209ENST00000568642 M0R2N4 97 aa1.66□□□□□ -2.14
VPS35-209ENST00000568642 IL5P05113 134 aa1.66□□□□□ -2.14
VPS35-209ENST00000568642 MGST1P10620 155 aaKnown RBP1.66□□□□□ -2.14
VPS35-209ENST00000568642 ADCYAP1P18509 176 aa1.66□□□□□ -2.14
VPS35-209ENST00000568642 DSCR10P59022 87 aa1.66□□□□□ -2.14
VPS35-209ENST00000568642 KRTAP10-8P60410 259 aa1.66□□□□□ -2.14
VPS35-209ENST00000568642 MOBPQ13875 183 aa1.66□□□□□ -2.14
VPS35-209ENST00000568642 IQCJQ1A5X6 159 aa1.66□□□□□ -2.14
VPS35-209ENST00000568642 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.66□□□□□ -2.14
VPS35-209ENST00000568642 DPPA3Q6W0C5 159 aa1.66□□□□□ -2.14
VPS35-209ENST00000568642 ZNF833PQ6ZTB9 187 aa1.66□□□□□ -2.14
VPS35-209ENST00000568642 MYOZ3Q8TDC0 251 aa1.66□□□□□ -2.14
VPS35-209ENST00000568642 SPACA4Q8TDM5 124 aa1.66□□□□□ -2.14
VPS35-209ENST00000568642 COPS9Q8WXC6 57 aa1.66□□□□□ -2.14
VPS35-209ENST00000568642 NHP2Q9NX24 153 aaKnown RBP1.66□□□□□ -2.14
VPS35-209ENST00000568642 TIMM9Q9Y5J7 89 aa1.66□□□□□ -2.14
VPS35-209ENST00000568642 TMSB15BA0A087X1C1 80 aa1.65□□□□□ -2.15
VPS35-209ENST00000568642 LYRM1O43325 122 aa1.65□□□□□ -2.15
VPS35-209ENST00000568642 SSSCA1O60232 199 aa1.65□□□□□ -2.15
VPS35-209ENST00000568642 SFT2D2O95562 160 aa1.65□□□□□ -2.15
VPS35-209ENST00000568642 HRES1P13985 223 aa1.65□□□□□ -2.15
VPS35-209ENST00000568642 SNCAP37840 140 aa1.65□□□□□ -2.15
VPS35-209ENST00000568642 RBM3P98179 157 aaKnown RBP1.65□□□□□ -2.15
VPS35-209ENST00000568642 MIR22HGQ0VDD5 57 aa1.65□□□□□ -2.15
VPS35-209ENST00000568642 LCE3AQ5TA76 89 aa1.65□□□□□ -2.15
VPS35-209ENST00000568642 ZNF720Q7Z2F6 126 aa1.65□□□□□ -2.15
VPS35-209ENST00000568642 LINC00301Q8NCQ3 95 aa1.65□□□□□ -2.15
VPS35-209ENST00000568642 FAM213BQ8TBF2 198 aa1.65□□□□□ -2.15
VPS35-209ENST00000568642 SPTSSAQ969W0 71 aa1.65□□□□□ -2.15
VPS35-209ENST00000568642 C14orf132Q9NPU4 83 aa1.65□□□□□ -2.15
VPS35-209ENST00000568642 RPS10P5Q9NQ39 176 aa1.65□□□□□ -2.15
VPS35-209ENST00000568642 PRO0461Q9UI25 63 aa1.65□□□□□ -2.15
VPS35-209ENST00000568642 TNXBP22105 4242 aa1.64□□□□□ -2.15
VPS35-209ENST00000568642 FCGBPQ9Y6R7 5405 aaPredicted RBP1.64□□□□□ -2.15
VPS35-209ENST00000568642 TRAV12-1A0A0B4J245 112 aa1.64□□□□□ -2.15
VPS35-209ENST00000568642 LOC107984156A0A0G2JMH3 177 aa1.64□□□□□ -2.15
VPS35-209ENST00000568642 UBE2L5PA0A1B0GUS4 154 aa1.64□□□□□ -2.15
VPS35-209ENST00000568642 FAM24AA6NFZ4 105 aa1.64□□□□□ -2.15
VPS35-209ENST00000568642 ZNF705FA8MVS1 300 aaPredicted RBP1.64□□□□□ -2.15
VPS35-209ENST00000568642 G3V3Q6 166 aa1.64□□□□□ -2.15
VPS35-209ENST00000568642 GNGT2O14610 69 aa1.64□□□□□ -2.15
VPS35-209ENST00000568642 IGKCP01834 107 aa1.64□□□□□ -2.15
VPS35-209ENST00000568642 TFF1P04155 84 aa1.64□□□□□ -2.15
VPS35-209ENST00000568642 LINC00032P0C843 101 aa1.64□□□□□ -2.15
VPS35-209ENST00000568642 MT3P25713 68 aa1.64□□□□□ -2.15
VPS35-209ENST00000568642 LSM3P62310 102 aaKnown RBP1.64□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 142.1 ms