RNA–Protein interactions for RNA: ENST00000566126.5

CLK3-217, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 732 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-217ENST00000566126 M0R378 163 aa8.9□□□□□ -0.98
CLK3-217ENST00000566126 PPP1R2P9O14990 202 aa8.9□□□□□ -0.98
CLK3-217ENST00000566126 SLC25A20O43772 301 aa8.9□□□□□ -0.98
CLK3-217ENST00000566126 Q6ZN92 141 aa8.9□□□□□ -0.98
CLK3-217ENST00000566126 ALKBH7Q9BT30 221 aaPredicted RBP8.9□□□□□ -0.98
CLK3-217ENST00000566126 HIGD2AQ9BW72 106 aa8.9□□□□□ -0.98
CLK3-217ENST00000566126 GIPP09681 153 aaPredicted RBP8.89□□□□□ -0.99
CLK3-217ENST00000566126 A0A1B0GUT8 65 aa8.88□□□□□ -0.99
CLK3-217ENST00000566126 A8MWL6 223 aa8.88□□□□□ -0.99
CLK3-217ENST00000566126 GATCO43716 136 aaKnown RBP8.88□□□□□ -0.99
CLK3-217ENST00000566126 PDE6DO43924 150 aa8.88□□□□□ -0.99
CLK3-217ENST00000566126 S100ZQ8WXG8 99 aa8.88□□□□□ -0.99
CLK3-217ENST00000566126 BORCS7Q96B45 105 aa8.88□□□□□ -0.99
CLK3-217ENST00000566126 IGLV4-3A0A075B6K6 122 aa8.87□□□□□ -0.99
CLK3-217ENST00000566126 LCE2BO14633 110 aa8.86□□□□□ -0.99
CLK3-217ENST00000566126 KRTAP6-3Q3LI67 103 aa8.86□□□□□ -0.99
CLK3-217ENST00000566126 LINC00299Q6ZSB3 139 aa8.86□□□□□ -0.99
CLK3-217ENST00000566126 ARPC5O15511 151 aa8.85□□□□□ -0.99
CLK3-217ENST00000566126 TCAPO15273 167 aa8.84□□□□□ -0.99
CLK3-217ENST00000566126 C20orf78Q9BR46 151 aa8.84□□□□□ -0.99
CLK3-217ENST00000566126 NEBP20929 6669 aa8.83□□□□□ -1
CLK3-217ENST00000566126 HIGD1CA8MV81 97 aa8.83□□□□□ -1
CLK3-217ENST00000566126 IFI27P40305 119 aaPredicted RBP8.83□□□□□ -1
CLK3-217ENST00000566126 ZC2HC1BQ5TFG8 222 aa8.83□□□□□ -1
CLK3-217ENST00000566126 FAM231DQ6ZW35 169 aa8.83□□□□□ -1
CLK3-217ENST00000566126 PYGO1Q9Y3Y4 419 aa8.83□□□□□ -1
CLK3-217ENST00000566126 TRBV24-1A0A075B6N3 115 aa8.82□□□□□ -1
CLK3-217ENST00000566126 C9orf92A6NGG3 77 aa8.82□□□□□ -1
CLK3-217ENST00000566126 MRPL51Q4U2R6 128 aaKnown RBP8.82□□□□□ -1
CLK3-217ENST00000566126 CT83Q5H943 113 aa8.82□□□□□ -1
CLK3-217ENST00000566126 TMEM141Q96I45 108 aa8.82□□□□□ -1
CLK3-217ENST00000566126 SMIM2Q9BVW6 85 aa8.82□□□□□ -1
CLK3-217ENST00000566126 ZNF706Q9Y5V0 76 aaPredicted RBP8.82□□□□□ -1
CLK3-217ENST00000566126 EIF5A2Q9GZV4 153 aaKnown RBP8.81□□□□□ -1
CLK3-217ENST00000566126 TEX43Q6ZNM6 134 aa8.8□□□□□ -1
CLK3-217ENST00000566126 GEMIN7Q9H840 131 aaKnown RBP8.8□□□□□ -1
CLK3-217ENST00000566126 CXCL5P42830 114 aa8.79□□□□□ -1
CLK3-217ENST00000566126 KRTAP3-3Q9BYR6 98 aa8.79□□□□□ -1
CLK3-217ENST00000566126 KRTAP3-2Q9BYR7 98 aa8.79□□□□□ -1
CLK3-217ENST00000566126 VPREB1P12018 145 aa8.78□□□□□ -1
CLK3-217ENST00000566126 RAB5BP61020 215 aa8.78□□□□□ -1
CLK3-217ENST00000566126 MOBPQ13875 183 aa8.78□□□□□ -1
CLK3-217ENST00000566126 FAM104BQ5XKR9 115 aa8.77□□□□□ -1.01
CLK3-217ENST00000566126 C2orf88Q9BSF0 95 aa8.77□□□□□ -1.01
CLK3-217ENST00000566126 CDKN2A-AS1Q9UH64 79 aa8.77□□□□□ -1.01
CLK3-217ENST00000566126 LINC00862A6NCI5 91 aa8.76□□□□□ -1.01
CLK3-217ENST00000566126 LINC00483Q53H64 154 aa8.76□□□□□ -1.01
CLK3-217ENST00000566126 FAM19A3Q7Z5A8 133 aa8.76□□□□□ -1.01
CLK3-217ENST00000566126 AMELXQ99217 191 aa8.76□□□□□ -1.01
CLK3-217ENST00000566126 IGLV9-49A0A0B4J1Y8 123 aa8.75□□□□□ -1.01
CLK3-217ENST00000566126 RIGQ13278 110 aa8.75□□□□□ -1.01
CLK3-217ENST00000566126 SSBP3-AS1Q7Z2R9 100 aa8.75□□□□□ -1.01
CLK3-217ENST00000566126 LINC01551Q86U37 167 aa8.75□□□□□ -1.01
CLK3-217ENST00000566126 CKS2P33552 79 aa8.74□□□□□ -1.01
CLK3-217ENST00000566126 C2orf66Q6UXQ4 117 aa8.73□□□□□ -1.01
CLK3-217ENST00000566126 Q8NDZ9 215 aa8.73□□□□□ -1.01
CLK3-217ENST00000566126 NPYP01303 97 aa8.72□□□□□ -1.01
CLK3-217ENST00000566126 ZNF345Q14585 488 aa8.71□□□□□ -1.02
CLK3-217ENST00000566126 SMCR5Q8TEV8 140 aa8.71□□□□□ -1.02
CLK3-217ENST00000566126 SMIM1B2RUZ4 78 aa8.7□□□□□ -1.02
CLK3-217ENST00000566126 TEX46H3BTG2 121 aa8.7□□□□□ -1.02
CLK3-217ENST00000566126 MT2AP02795 61 aa8.7□□□□□ -1.02
CLK3-217ENST00000566126 HERVK_113P63121 156 aa8.7□□□□□ -1.02
CLK3-217ENST00000566126 COX7B2Q8TF08 81 aa8.7□□□□□ -1.02
CLK3-217ENST00000566126 VCX2Q9H322 139 aa8.7□□□□□ -1.02
CLK3-217ENST00000566126 D6R8Y8 96 aa8.69□□□□□ -1.02
CLK3-217ENST00000566126 SMLR1H3BR10 107 aa8.69□□□□□ -1.02
CLK3-217ENST00000566126 NDUFA13Q9P0J0 144 aa8.69□□□□□ -1.02
CLK3-217ENST00000566126 RAB5AP20339 215 aa8.68□□□□□ -1.02
CLK3-217ENST00000566126 KRTAP19-6Q3LI70 58 aa8.68□□□□□ -1.02
CLK3-217ENST00000566126 GAGE2AQ6NT46 116 aa8.68□□□□□ -1.02
CLK3-217ENST00000566126 Q6Q795 121 aa8.68□□□□□ -1.02
CLK3-217ENST00000566126 KRTAP9-3Q9BYQ3 159 aa8.68□□□□□ -1.02
CLK3-217ENST00000566126 IGLV6-57P01721 117 aa8.67□□□□□ -1.02
CLK3-217ENST00000566126 RPL37P61927 97 aaKnown RBP8.67□□□□□ -1.02
CLK3-217ENST00000566126 RPL24P83731 157 aaKnown RBP8.66□□□□□ -1.02
CLK3-217ENST00000566126 AKAP14Q86UN6 197 aa8.66□□□□□ -1.02
CLK3-217ENST00000566126 SND1-IT1Q9HBX3 110 aa8.66□□□□□ -1.02
CLK3-217ENST00000566126 LINC00846Q9NV44 126 aa8.66□□□□□ -1.02
CLK3-217ENST00000566126 KANTRA0A1W2PQU2 76 aa8.65□□□□□ -1.02
CLK3-217ENST00000566126 PFN2P35080 140 aa8.65□□□□□ -1.02
CLK3-217ENST00000566126 RAB14P61106 215 aa8.65□□□□□ -1.02
CLK3-217ENST00000566126 SEC11AP67812 179 aa8.65□□□□□ -1.02
CLK3-217ENST00000566126 PDZD11Q5EBL8 140 aa8.65□□□□□ -1.02
CLK3-217ENST00000566126 MUC12Q9UKN1 5478 aa8.64□□□□□ -1.03
CLK3-217ENST00000566126 MT1FP04733 61 aa8.64□□□□□ -1.03
CLK3-217ENST00000566126 KRTAP20-1Q3LI63 56 aa8.64□□□□□ -1.03
CLK3-217ENST00000566126 OSTCQ9NRP0 149 aa8.64□□□□□ -1.03
CLK3-217ENST00000566126 V9GYV3 84 aa8.64□□□□□ -1.03
CLK3-217ENST00000566126 TIMM17AQ99595 171 aa8.63□□□□□ -1.03
CLK3-217ENST00000566126 IGIPA6NJ69 53 aa8.62□□□□□ -1.03
CLK3-217ENST00000566126 NPSP0C0P6 89 aa8.62□□□□□ -1.03
CLK3-217ENST00000566126 TAGLN2P37802 199 aaKnown RBP8.62□□□□□ -1.03
CLK3-217ENST00000566126 CYSLTR1Q9Y271 337 aa8.62□□□□□ -1.03
CLK3-217ENST00000566126 TMEM250H0YL14 139 aa8.61□□□□□ -1.03
CLK3-217ENST00000566126 SPRR1AP35321 89 aa8.6□□□□□ -1.03
CLK3-217ENST00000566126 NAT8BQ9UHF3 227 aa8.6□□□□□ -1.03
CLK3-217ENST00000566126 ERC2-IT1O76042 136 aa8.59□□□□□ -1.03
CLK3-217ENST00000566126 LOC389332A0A1B0GUA5 103 aa8.58□□□□□ -1.04
CLK3-217ENST00000566126 ATP5LO75964 103 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 84.1 ms