RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 CDKN2A-AS1Q9UH64 79 aa9.97□□□□□ -0.81
CLN3-211ENST00000564091 A0A087X002 238 aa9.96□□□□□ -0.82
CLN3-211ENST00000564091 FAM19A3Q7Z5A8 133 aa9.96□□□□□ -0.82
CLN3-211ENST00000564091 MRPL55Q7Z7F7 128 aaKnown RBP9.95□□□□□ -0.82
CLN3-211ENST00000564091 F8VRH5 84 aa9.94□□□□□ -0.82
CLN3-211ENST00000564091 BCE1O60756 84 aa9.94□□□□□ -0.82
CLN3-211ENST00000564091 NPSP0C0P6 89 aa9.94□□□□□ -0.82
CLN3-211ENST00000564091 HERVK_113P63121 156 aa9.94□□□□□ -0.82
CLN3-211ENST00000564091 GEMIN7Q9H840 131 aaKnown RBP9.94□□□□□ -0.82
CLN3-211ENST00000564091 RPL37AP8A6NKH3 93 aa9.93□□□□□ -0.82
CLN3-211ENST00000564091 RPL28P46779 137 aaKnown RBP9.93□□□□□ -0.82
CLN3-211ENST00000564091 ANAPC11Q9NYG5 84 aa9.93□□□□□ -0.82
CLN3-211ENST00000564091 TP73-AS1Q9UF72 201 aa9.93□□□□□ -0.82
CLN3-211ENST00000564091 SEC11AP67812 179 aa9.92□□□□□ -0.82
CLN3-211ENST00000564091 LINC00167Q96N53 147 aa9.92□□□□□ -0.82
CLN3-211ENST00000564091 GAGE10A6NGK3 116 aa9.91□□□□□ -0.82
CLN3-211ENST00000564091 K7EMI3 77 aa9.91□□□□□ -0.82
CLN3-211ENST00000564091 MT-ND4LP03901 98 aa9.91□□□□□ -0.82
CLN3-211ENST00000564091 CRYGAP11844 174 aa9.91□□□□□ -0.82
CLN3-211ENST00000564091 TYMSOSQ8TAI1 123 aa9.91□□□□□ -0.82
CLN3-211ENST00000564091 NXT2Q9NPJ8 142 aaKnown RBP9.91□□□□□ -0.82
CLN3-211ENST00000564091 PAPPA-AS1Q5QFB9 102 aa9.9□□□□□ -0.82
CLN3-211ENST00000564091 ANAPC16Q96DE5 110 aa9.9□□□□□ -0.82
CLN3-211ENST00000564091 TIMM17AQ99595 171 aa9.9□□□□□ -0.82
CLN3-211ENST00000564091 CXCL5P42830 114 aa9.89□□□□□ -0.83
CLN3-211ENST00000564091 TOMM6Q96B49 74 aa9.89□□□□□ -0.83
CLN3-211ENST00000564091 MUC17Q685J3 4493 aa9.89□□□□□ -0.83
CLN3-211ENST00000564091 A0A0U1RQV1 116 aa9.88□□□□□ -0.83
CLN3-211ENST00000564091 SMIM1B2RUZ4 78 aa9.88□□□□□ -0.83
CLN3-211ENST00000564091 PNRC1Q12796 327 aaPredicted RBP9.88□□□□□ -0.83
CLN3-211ENST00000564091 ADCYAP1P18509 176 aa9.87□□□□□ -0.83
CLN3-211ENST00000564091 RAB5BP61020 215 aa9.87□□□□□ -0.83
CLN3-211ENST00000564091 KIAA1644Q3SXP7 199 aa9.87□□□□□ -0.83
CLN3-211ENST00000564091 COX7B2Q8TF08 81 aa9.87□□□□□ -0.83
CLN3-211ENST00000564091 G0S2P27469 103 aa9.86□□□□□ -0.83
CLN3-211ENST00000564091 KRTAP13-2Q52LG2 175 aa9.86□□□□□ -0.83
CLN3-211ENST00000564091 ERASQ7Z444 233 aa9.86□□□□□ -0.83
CLN3-211ENST00000564091 SCGB3A1Q96QR1 104 aa9.86□□□□□ -0.83
CLN3-211ENST00000564091 PDZD11Q5EBL8 140 aa9.85□□□□□ -0.83
CLN3-211ENST00000564091 RETNLBQ9BQ08 111 aa9.85□□□□□ -0.83
CLN3-211ENST00000564091 TINCRA0A1B0GVN0 87 aa9.84□□□□□ -0.83
CLN3-211ENST00000564091 SPINK8P0C7L1 97 aa9.84□□□□□ -0.83
CLN3-211ENST00000564091 UBE2AP49459 152 aa9.84□□□□□ -0.83
CLN3-211ENST00000564091 KRTAP13-1Q8IUC0 172 aa9.84□□□□□ -0.83
CLN3-211ENST00000564091 IGLV5-37A0A075B6J1 123 aa9.83□□□□□ -0.84
CLN3-211ENST00000564091 IGLV5-45A0A087WSX0 123 aa9.83□□□□□ -0.84
CLN3-211ENST00000564091 SCO1O75880 301 aa9.83□□□□□ -0.84
CLN3-211ENST00000564091 KRTAP9-2Q9BYQ4 174 aa9.83□□□□□ -0.84
CLN3-211ENST00000564091 NKAPP1Q8N9T2 125 aa9.82□□□□□ -0.84
CLN3-211ENST00000564091 IGKV2-28A0A075B6P5 120 aa9.81□□□□□ -0.84
CLN3-211ENST00000564091 IGKV2D-28P01615 120 aa9.81□□□□□ -0.84
CLN3-211ENST00000564091 CST9LQ9H4G1 147 aa9.81□□□□□ -0.84
CLN3-211ENST00000564091 LINC00304Q8N9R0 145 aa9.8□□□□□ -0.84
CLN3-211ENST00000564091 FAM229BQ4G0N7 80 aa9.78□□□□□ -0.84
CLN3-211ENST00000564091 LCE2AQ5TA79 106 aaPredicted RBP9.78□□□□□ -0.84
CLN3-211ENST00000564091 ATP5LO75964 103 aa9.77□□□□□ -0.85
CLN3-211ENST00000564091 PFN2P35080 140 aa9.77□□□□□ -0.85
CLN3-211ENST00000564091 PRLHP81277 87 aa9.77□□□□□ -0.85
CLN3-211ENST00000564091 PMVKQ15126 192 aa9.77□□□□□ -0.85
CLN3-211ENST00000564091 IGKV2D-26A0A0A0MRZ7 120 aa9.76□□□□□ -0.85
CLN3-211ENST00000564091 RAB14P61106 215 aa9.76□□□□□ -0.85
CLN3-211ENST00000564091 MRPL18Q9H0U6 180 aaKnown RBP9.76□□□□□ -0.85
CLN3-211ENST00000564091 LINC01546A6NGU7 62 aa9.75□□□□□ -0.85
CLN3-211ENST00000564091 TMEM238C9JI98 176 aa9.75□□□□□ -0.85
CLN3-211ENST00000564091 CDIP1Q9H305 208 aa9.75□□□□□ -0.85
CLN3-211ENST00000564091 IGLV7-46A0A075B6I9 117 aa9.74□□□□□ -0.85
CLN3-211ENST00000564091 H3BRM9 83 aa9.74□□□□□ -0.85
CLN3-211ENST00000564091 FAM19A1Q7Z5A9 133 aa9.74□□□□□ -0.85
CLN3-211ENST00000564091 TMEM126AQ9H061 195 aa9.74□□□□□ -0.85
CLN3-211ENST00000564091 LINC01549A6NIU2 74 aa9.73□□□□□ -0.85
CLN3-211ENST00000564091 VPREB1P12018 145 aa9.73□□□□□ -0.85
CLN3-211ENST00000564091 SND1-IT1Q9HBX3 110 aa9.73□□□□□ -0.85
CLN3-211ENST00000564091 FA2HQ7L5A8 372 aa9.72□□□□□ -0.85
CLN3-211ENST00000564091 GNB1LQ9BYB4 327 aa9.72□□□□□ -0.85
CLN3-211ENST00000564091 TRAV9-1A0A075B6T8 112 aa9.71□□□□□ -0.86
CLN3-211ENST00000564091 IGLV5-39A0A0G2JS06 123 aa9.71□□□□□ -0.86
CLN3-211ENST00000564091 M0R378 163 aa9.71□□□□□ -0.86
CLN3-211ENST00000564091 TPRXLQ17RH7 258 aa9.71□□□□□ -0.86
CLN3-211ENST00000564091 Q8NDZ9 215 aa9.71□□□□□ -0.86
CLN3-211ENST00000564091 ERG28Q9UKR5 140 aa9.71□□□□□ -0.86
CLN3-211ENST00000564091 IGLC3P0DOY3 106 aa9.7□□□□□ -0.86
CLN3-211ENST00000564091 NDUFA6P56556 154 aa9.7□□□□□ -0.86
CLN3-211ENST00000564091 C3orf22Q8N5N4 141 aa9.7□□□□□ -0.86
CLN3-211ENST00000564091 PLEKHB2Q96CS7 222 aa9.7□□□□□ -0.86
CLN3-211ENST00000564091 ZNF625Q96I27 306 aaPredicted RBP9.7□□□□□ -0.86
CLN3-211ENST00000564091 SMCO4Q9NRQ5 59 aa9.7□□□□□ -0.86
CLN3-211ENST00000564091 RPL24P83731 157 aaKnown RBP9.69□□□□□ -0.86
CLN3-211ENST00000564091 TMEM218A2RU14 115 aa9.68□□□□□ -0.86
CLN3-211ENST00000564091 ZNF22P17026 224 aaPredicted RBP9.68□□□□□ -0.86
CLN3-211ENST00000564091 FABP9Q0Z7S8 132 aa9.68□□□□□ -0.86
CLN3-211ENST00000564091 CBLN2Q8IUK8 224 aa9.68□□□□□ -0.86
CLN3-211ENST00000564091 S100PP25815 95 aa9.67□□□□□ -0.86
CLN3-211ENST00000564091 CLLU1Q5K131 121 aa9.67□□□□□ -0.86
CLN3-211ENST00000564091 PPDPFQ9H3Y8 114 aa9.67□□□□□ -0.86
CLN3-211ENST00000564091 A0A096LNJ9 63 aa9.66□□□□□ -0.86
CLN3-211ENST00000564091 HIGD2AQ9BW72 106 aa9.66□□□□□ -0.86
CLN3-211ENST00000564091 COX17Q14061 63 aa9.65□□□□□ -0.86
CLN3-211ENST00000564091 CTAG1AP78358 180 aa9.64□□□□□ -0.87
CLN3-211ENST00000564091 UQCC3Q6UW78 93 aa9.63□□□□□ -0.87
CLN3-211ENST00000564091 URB1-AS1Q96HZ7 61 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 98.7 ms