RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 IGHV1-58A0A0C4DH39 117 aa7.86□□□□□ -1.15
LDLR-212ENST00000560467 LEPROTO15243 131 aa7.86□□□□□ -1.15
LDLR-212ENST00000560467 SPINK8P0C7L1 97 aa7.86□□□□□ -1.15
LDLR-212ENST00000560467 COX6A2Q02221 97 aa7.86□□□□□ -1.15
LDLR-212ENST00000560467 SFTA2Q6UW10 78 aa7.86□□□□□ -1.15
LDLR-212ENST00000560467 Q6ZRN7 208 aaPredicted RBP7.86□□□□□ -1.15
LDLR-212ENST00000560467 DDTP30046 118 aa7.85□□□□□ -1.15
LDLR-212ENST00000560467 XGP55808 180 aa7.85□□□□□ -1.15
LDLR-212ENST00000560467 C6orf226Q5I0X4 101 aa7.85□□□□□ -1.15
LDLR-212ENST00000560467 IGHV3-64A0A075B6Q5 118 aa7.84□□□□□ -1.15
LDLR-212ENST00000560467 J3QQQ9 107 aa7.84□□□□□ -1.15
LDLR-212ENST00000560467 CKS1BP61024 79 aa7.84□□□□□ -1.15
LDLR-212ENST00000560467 FOXI1Q12951 378 aa7.84□□□□□ -1.15
LDLR-212ENST00000560467 Q5VSD8 79 aa7.84□□□□□ -1.15
LDLR-212ENST00000560467 TOMM7Q9P0U1 55 aa7.84□□□□□ -1.15
LDLR-212ENST00000560467 VPS13BQ7Z7G8 4022 aa7.84□□□□□ -1.15
LDLR-212ENST00000560467 MYMXA0A1B0GTQ4 84 aa7.83□□□□□ -1.16
LDLR-212ENST00000560467 ZNF561-AS1K7EIQ3 104 aa7.83□□□□□ -1.16
LDLR-212ENST00000560467 MAJINQ3KP22 176 aa7.83□□□□□ -1.16
LDLR-212ENST00000560467 SLC25A34Q6PIV7 304 aa7.83□□□□□ -1.16
LDLR-212ENST00000560467 ORAOV1Q8WV07 137 aa7.83□□□□□ -1.16
LDLR-212ENST00000560467 KRTAP10-1P60331 282 aa7.82□□□□□ -1.16
LDLR-212ENST00000560467 CIRBPQ14011 172 aaKnown RBP7.82□□□□□ -1.16
LDLR-212ENST00000560467 C14orf177Q52M58 125 aa7.82□□□□□ -1.16
LDLR-212ENST00000560467 ANKRD39Q53RE8 183 aa7.82□□□□□ -1.16
LDLR-212ENST00000560467 SCGB1D4Q6XE38 83 aa7.82□□□□□ -1.16
LDLR-212ENST00000560467 COX7B2Q8TF08 81 aa7.82□□□□□ -1.16
LDLR-212ENST00000560467 UQCR10Q9UDW1 63 aa7.82□□□□□ -1.16
LDLR-212ENST00000560467 IGLV5-39A0A0G2JS06 123 aa7.81□□□□□ -1.16
LDLR-212ENST00000560467 ZNF815PA8K554 130 aa7.81□□□□□ -1.16
LDLR-212ENST00000560467 SMIM1B2RUZ4 78 aa7.81□□□□□ -1.16
LDLR-212ENST00000560467 COX8AP10176 69 aa7.81□□□□□ -1.16
LDLR-212ENST00000560467 CXCL5P42830 114 aa7.81□□□□□ -1.16
LDLR-212ENST00000560467 C14orf144Q96I85 54 aa7.81□□□□□ -1.16
LDLR-212ENST00000560467 PGPEP1Q9NXJ5 209 aa7.81□□□□□ -1.16
LDLR-212ENST00000560467 F8WDY8 70 aa7.8□□□□□ -1.16
LDLR-212ENST00000560467 GCSHP23434 173 aa7.8□□□□□ -1.16
LDLR-212ENST00000560467 HERV-K104P63124 156 aa7.8□□□□□ -1.16
LDLR-212ENST00000560467 CDPF1Q6NVV7 123 aa7.8□□□□□ -1.16
LDLR-212ENST00000560467 Q8IZM0 81 aa7.8□□□□□ -1.16
LDLR-212ENST00000560467 NDUFA12Q9UI09 145 aa7.8□□□□□ -1.16
LDLR-212ENST00000560467 EREGO14944 169 aa7.79□□□□□ -1.16
LDLR-212ENST00000560467 DLEU1O43261 78 aa7.79□□□□□ -1.16
LDLR-212ENST00000560467 SMR3BP02814 79 aaPredicted RBP7.79□□□□□ -1.16
LDLR-212ENST00000560467 HAMPP81172 84 aa7.79□□□□□ -1.16
LDLR-212ENST00000560467 SPAG11BQ08648 103 aa7.79□□□□□ -1.16
LDLR-212ENST00000560467 MIEN1Q9BRT3 115 aa7.79□□□□□ -1.16
LDLR-212ENST00000560467 A0A087WTM6 91 aa7.78□□□□□ -1.16
LDLR-212ENST00000560467 IGKV2D-26A0A0A0MRZ7 120 aa7.78□□□□□ -1.16
LDLR-212ENST00000560467 PRO1933Q9H354 126 aa7.78□□□□□ -1.16
LDLR-212ENST00000560467 NDUFA1O15239 70 aa7.77□□□□□ -1.17
LDLR-212ENST00000560467 PCP2Q8IVA1 136 aa7.77□□□□□ -1.17
LDLR-212ENST00000560467 BOD1L2Q8IYS8 172 aa7.77□□□□□ -1.17
LDLR-212ENST00000560467 COPS9Q8WXC6 57 aa7.77□□□□□ -1.17
LDLR-212ENST00000560467 CAMK2N2Q96S95 79 aa7.77□□□□□ -1.17
LDLR-212ENST00000560467 SRRM2Q9UQ35 2752 aaKnown RBP7.77□□□□□ -1.17
LDLR-212ENST00000560467 USP17L23D6RBM5 183 aa7.76□□□□□ -1.17
LDLR-212ENST00000560467 HNRNPA3P51991 378 aaKnown RBP7.76□□□□□ -1.17
LDLR-212ENST00000560467 MEIG1Q5JSS6 88 aa7.76□□□□□ -1.17
LDLR-212ENST00000560467 KRTAP26-1Q6PEX3 210 aa7.76□□□□□ -1.17
LDLR-212ENST00000560467 C2orf48Q96LS8 159 aa7.76□□□□□ -1.17
LDLR-212ENST00000560467 GVQW2A0A096LPI5 108 aaPredicted RBP7.75□□□□□ -1.17
LDLR-212ENST00000560467 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.75□□□□□ -1.17
LDLR-212ENST00000560467 TMEM238C9JI98 176 aa7.75□□□□□ -1.17
LDLR-212ENST00000560467 SRSF9Q13242 221 aaKnown RBP eCLIP7.75□□□□□ -1.17
LDLR-212ENST00000560467 HIGD2BQ4VC39 106 aa7.75□□□□□ -1.17
LDLR-212ENST00000560467 M0R143 59 aa7.74□□□□□ -1.17
LDLR-212ENST00000560467 PKIGQ9Y2B9 76 aa7.74□□□□□ -1.17
LDLR-212ENST00000560467 LINC00158P58513 81 aa7.73□□□□□ -1.17
LDLR-212ENST00000560467 TSPEAR-AS2P59090 65 aa7.73□□□□□ -1.17
LDLR-212ENST00000560467 SYCNQ0VAF6 134 aa7.73□□□□□ -1.17
LDLR-212ENST00000560467 A0A0J9YXY3 114 aa7.72□□□□□ -1.17
LDLR-212ENST00000560467 TRBV30A0A0K0K1B3 111 aa7.72□□□□□ -1.17
LDLR-212ENST00000560467 COX17Q14061 63 aa7.72□□□□□ -1.17
LDLR-212ENST00000560467 NTN5Q8WTR8 489 aaPredicted RBP7.72□□□□□ -1.17
LDLR-212ENST00000560467 ZNF625Q96I27 306 aaPredicted RBP7.72□□□□□ -1.17
LDLR-212ENST00000560467 HIST1H4GQ99525 98 aa7.72□□□□□ -1.17
LDLR-212ENST00000560467 TTTY13Q9BZ97 58 aa7.72□□□□□ -1.17
LDLR-212ENST00000560467 HIGD1BQ9P298 99 aa7.72□□□□□ -1.17
LDLR-212ENST00000560467 LECT2O14960 151 aa7.71□□□□□ -1.18
LDLR-212ENST00000560467 TIMM17BO60830 172 aa7.71□□□□□ -1.18
LDLR-212ENST00000560467 KIAA0087Q14695 138 aa7.71□□□□□ -1.18
LDLR-212ENST00000560467 C2orf82Q6UX34 121 aa7.71□□□□□ -1.18
LDLR-212ENST00000560467 Q6ZVH6 145 aa7.71□□□□□ -1.18
LDLR-212ENST00000560467 C15orf56Q8N910 161 aa7.71□□□□□ -1.18
LDLR-212ENST00000560467 FAM229AH3BQW9 127 aa7.7□□□□□ -1.18
LDLR-212ENST00000560467 J3QL48 77 aa7.7□□□□□ -1.18
LDLR-212ENST00000560467 PFN2P35080 140 aa7.7□□□□□ -1.18
LDLR-212ENST00000560467 UNQ6190/PRO20217Q6UXQ8 127 aa7.7□□□□□ -1.18
LDLR-212ENST00000560467 CARD19Q96LW7 228 aa7.7□□□□□ -1.18
LDLR-212ENST00000560467 ERG28Q9UKR5 140 aa7.7□□□□□ -1.18
LDLR-212ENST00000560467 IGLV5-52A0A0A0MRZ9 124 aa7.69□□□□□ -1.18
LDLR-212ENST00000560467 TAL2Q16559 108 aa7.69□□□□□ -1.18
LDLR-212ENST00000560467 RNF151Q2KHN1 245 aa7.69□□□□□ -1.18
LDLR-212ENST00000560467 LINC00526Q96FQ7 95 aa7.69□□□□□ -1.18
LDLR-212ENST00000560467 DNAH8Q96JB1 4490 aa7.68□□□□□ -1.18
LDLR-212ENST00000560467 IFITM1P13164 125 aa7.68□□□□□ -1.18
LDLR-212ENST00000560467 A0A0U1RRA0 63 aa7.67□□□□□ -1.18
LDLR-212ENST00000560467 TMEM238LA0A1B0GVL6 79 aa7.67□□□□□ -1.18
LDLR-212ENST00000560467 A6NJY4 79 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 101 ms