RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 A0A096LNI7 61 aa8.28□□□□□ -1.08
NEDD8-208ENST00000560427 EPM2AB3EWF7 344 aa8.28□□□□□ -1.08
NEDD8-208ENST00000560427 F8VRH5 84 aa8.28□□□□□ -1.08
NEDD8-208ENST00000560427 FAM229AH3BQW9 127 aa8.28□□□□□ -1.08
NEDD8-208ENST00000560427 PANO1I0J062 215 aa8.28□□□□□ -1.08
NEDD8-208ENST00000560427 CHTF8P0CG12 524 aa8.28□□□□□ -1.08
NEDD8-208ENST00000560427 ZNF22P17026 224 aaPredicted RBP8.28□□□□□ -1.08
NEDD8-208ENST00000560427 UNQ6190/PRO20217Q6UXQ8 127 aa8.28□□□□□ -1.08
NEDD8-208ENST00000560427 C6orf48Q9UBA6 75 aa8.28□□□□□ -1.08
NEDD8-208ENST00000560427 CHTOPQ9Y3Y2 248 aaKnown RBP8.28□□□□□ -1.08
NEDD8-208ENST00000560427 IGKV2-24A0A0C4DH68 120 aa8.27□□□□□ -1.09
NEDD8-208ENST00000560427 C11orf86A6NJI1 115 aa8.27□□□□□ -1.09
NEDD8-208ENST00000560427 PTTG1IPP53801 180 aa8.27□□□□□ -1.09
NEDD8-208ENST00000560427 C10orf25Q5T742 122 aa8.27□□□□□ -1.09
NEDD8-208ENST00000560427 Q5VSD8 79 aa8.27□□□□□ -1.09
NEDD8-208ENST00000560427 COX7B2Q8TF08 81 aa8.27□□□□□ -1.09
NEDD8-208ENST00000560427 PLAC8Q9NZF1 115 aa8.27□□□□□ -1.09
NEDD8-208ENST00000560427 A0A087WYN8 130 aa8.26□□□□□ -1.09
NEDD8-208ENST00000560427 NUPR1O60356 82 aa8.26□□□□□ -1.09
NEDD8-208ENST00000560427 MAJINQ3KP22 176 aa8.26□□□□□ -1.09
NEDD8-208ENST00000560427 COA6Q5JTJ3 125 aaKnown RBP8.26□□□□□ -1.09
NEDD8-208ENST00000560427 LINC00528Q8N1L1 170 aa8.26□□□□□ -1.09
NEDD8-208ENST00000560427 DPH3Q96FX2 82 aa8.26□□□□□ -1.09
NEDD8-208ENST00000560427 IGLV5-39A0A0G2JS06 123 aa8.25□□□□□ -1.09
NEDD8-208ENST00000560427 SMR3BP02814 79 aaPredicted RBP8.25□□□□□ -1.09
NEDD8-208ENST00000560427 SPINK8P0C7L1 97 aa8.25□□□□□ -1.09
NEDD8-208ENST00000560427 RPL18AQ02543 176 aaKnown RBP8.25□□□□□ -1.09
NEDD8-208ENST00000560427 TMEM170BQ5T4T1 132 aa8.25□□□□□ -1.09
NEDD8-208ENST00000560427 C2orf82Q6UX34 121 aa8.25□□□□□ -1.09
NEDD8-208ENST00000560427 NDUFC2-KCTD14E9PQ53 114 aa8.24□□□□□ -1.09
NEDD8-208ENST00000560427 PLA2G1BP04054 148 aaKnown RBP8.24□□□□□ -1.09
NEDD8-208ENST00000560427 GAGE2BQ13066 116 aa8.24□□□□□ -1.09
NEDD8-208ENST00000560427 SFTA2Q6UW10 78 aa8.24□□□□□ -1.09
NEDD8-208ENST00000560427 STPG4Q8N801 248 aa8.24□□□□□ -1.09
NEDD8-208ENST00000560427 KRTAP17-1Q9BYP8 105 aa8.24□□□□□ -1.09
NEDD8-208ENST00000560427 PLNP26678 52 aa8.23□□□□□ -1.09
NEDD8-208ENST00000560427 ODF1Q14990 250 aa8.23□□□□□ -1.09
NEDD8-208ENST00000560427 MAP1LC3CQ9BXW4 147 aa8.23□□□□□ -1.09
NEDD8-208ENST00000560427 FABP4P15090 132 aa8.22□□□□□ -1.09
NEDD8-208ENST00000560427 Q6ZRP5 223 aa8.22□□□□□ -1.09
NEDD8-208ENST00000560427 TMEM223A0PJW6 202 aa8.21□□□□□ -1.1
NEDD8-208ENST00000560427 H0Y8G0 127 aa8.21□□□□□ -1.1
NEDD8-208ENST00000560427 C7orf33Q8WU49 177 aa8.2□□□□□ -1.1
NEDD8-208ENST00000560427 KRTAP4-5Q9BYR2 181 aa8.2□□□□□ -1.1
NEDD8-208ENST00000560427 FAT1Q14517 4588 aa8.2□□□□□ -1.1
NEDD8-208ENST00000560427 DPM2O94777 84 aa8.19□□□□□ -1.1
NEDD8-208ENST00000560427 ABCA13Q86UQ4 5058 aa8.18□□□□□ -1.1
NEDD8-208ENST00000560427 SYS1-DBNDD2H3BUS1 97 aa8.18□□□□□ -1.1
NEDD8-208ENST00000560427 RPL37AP61513 92 aaKnown RBP8.18□□□□□ -1.1
NEDD8-208ENST00000560427 GAGE2EQ4V326 116 aa8.18□□□□□ -1.1
NEDD8-208ENST00000560427 C9orf116Q5BN46 136 aaPredicted RBP8.18□□□□□ -1.1
NEDD8-208ENST00000560427 GAGE2DQ9UEU5 116 aa8.18□□□□□ -1.1
NEDD8-208ENST00000560427 IGKCP01834 107 aa8.17□□□□□ -1.1
NEDD8-208ENST00000560427 HERVK_113P61574 105 aa8.17□□□□□ -1.1
NEDD8-208ENST00000560427 KRTAP3-3Q9BYR6 98 aa8.17□□□□□ -1.1
NEDD8-208ENST00000560427 KRTAP3-2Q9BYR7 98 aa8.17□□□□□ -1.1
NEDD8-208ENST00000560427 A0A1W2PNN7 141 aa8.16□□□□□ -1.1
NEDD8-208ENST00000560427 COX17Q14061 63 aa8.16□□□□□ -1.1
NEDD8-208ENST00000560427 PET117Q6UWS5 81 aa8.16□□□□□ -1.1
NEDD8-208ENST00000560427 ZNF625Q96I27 306 aaPredicted RBP8.16□□□□□ -1.1
NEDD8-208ENST00000560427 PCLOQ9Y6V0 5065 aa8.15□□□□□ -1.1
NEDD8-208ENST00000560427 INAFM2P0DMQ5 153 aa8.15□□□□□ -1.1
NEDD8-208ENST00000560427 KRTAP10-4P60372 401 aaPredicted RBP8.15□□□□□ -1.1
NEDD8-208ENST00000560427 HERV-K104P63124 156 aa8.14□□□□□ -1.11
NEDD8-208ENST00000560427 C9orf129Q5T035 196 aaKnown RBP8.14□□□□□ -1.11
NEDD8-208ENST00000560427 LINC01545Q5VT33 79 aa8.14□□□□□ -1.11
NEDD8-208ENST00000560427 ERG28Q9UKR5 140 aa8.14□□□□□ -1.11
NEDD8-208ENST00000560427 AKR1D1P51857 326 aa8.13□□□□□ -1.11
NEDD8-208ENST00000560427 PLEKHB2Q96CS7 222 aa8.13□□□□□ -1.11
NEDD8-208ENST00000560427 PMCHL2Q9BQD1 86 aa8.13□□□□□ -1.11
NEDD8-208ENST00000560427 VPS13BQ7Z7G8 4022 aa8.13□□□□□ -1.11
NEDD8-208ENST00000560427 C20orf202A1L168 122 aa8.12□□□□□ -1.11
NEDD8-208ENST00000560427 LINC00587B1AMM8 73 aa8.12□□□□□ -1.11
NEDD8-208ENST00000560427 LEPROTO15243 131 aa8.12□□□□□ -1.11
NEDD8-208ENST00000560427 S100A6P06703 90 aa8.12□□□□□ -1.11
NEDD8-208ENST00000560427 C3orf79P0CE67 100 aa8.12□□□□□ -1.11
NEDD8-208ENST00000560427 FAM19A5Q7Z5A7 132 aaPredicted RBP8.12□□□□□ -1.11
NEDD8-208ENST00000560427 FAM168BA1KXE4 195 aa8.11□□□□□ -1.11
NEDD8-208ENST00000560427 M0QXV9 152 aa8.11□□□□□ -1.11
NEDD8-208ENST00000560427 NMUP48645 174 aa8.11□□□□□ -1.11
NEDD8-208ENST00000560427 PRR3P79522 188 aaKnown RBP8.11□□□□□ -1.11
NEDD8-208ENST00000560427 XAGE1AQ9HD64 81 aa8.11□□□□□ -1.11
NEDD8-208ENST00000560427 NDUFA12Q9UI09 145 aa8.11□□□□□ -1.11
NEDD8-208ENST00000560427 MYMXA0A1B0GTQ4 84 aa8.1□□□□□ -1.11
NEDD8-208ENST00000560427 PFN2P35080 140 aa8.1□□□□□ -1.11
NEDD8-208ENST00000560427 KRTDAPP60985 99 aa8.1□□□□□ -1.11
NEDD8-208ENST00000560427 TP73-AS1Q9UF72 201 aa8.1□□□□□ -1.11
NEDD8-208ENST00000560427 PLA2G2DQ9UNK4 145 aa8.1□□□□□ -1.11
NEDD8-208ENST00000560427 E9PLD3 99 aa8.09□□□□□ -1.11
NEDD8-208ENST00000560427 J3QQQ9 107 aa8.09□□□□□ -1.11
NEDD8-208ENST00000560427 LGALS3P17931 250 aaKnown RBP8.09□□□□□ -1.11
NEDD8-208ENST00000560427 S100A2P29034 98 aa8.09□□□□□ -1.11
NEDD8-208ENST00000560427 LBHQ53QV2 105 aaPredicted RBP8.09□□□□□ -1.11
NEDD8-208ENST00000560427 PHF5AQ7RTV0 110 aaKnown RBP8.09□□□□□ -1.11
NEDD8-208ENST00000560427 KRTAP7-1Q8IUC3 87 aa8.09□□□□□ -1.11
NEDD8-208ENST00000560427 HIST3H2BBQ8N257 126 aa8.09□□□□□ -1.11
NEDD8-208ENST00000560427 SRRM2Q9UQ35 2752 aaKnown RBP8.08□□□□□ -1.12
NEDD8-208ENST00000560427 IGLV5-37A0A075B6J1 123 aa8.08□□□□□ -1.12
NEDD8-208ENST00000560427 SERTAD4-AS1Q5TG53 156 aa8.08□□□□□ -1.12
NEDD8-208ENST00000560427 TSPEAR-AS2P59090 65 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms