RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 TRBV30A0A0K0K1B3 111 aa8.58□□□□□ -1.04
SHMT2-219ENST00000555563 TINCRA0A1B0GVN0 87 aa8.58□□□□□ -1.04
SHMT2-219ENST00000555563 A0A1W2PNN7 141 aa8.58□□□□□ -1.04
SHMT2-219ENST00000555563 PRSS2P07478 247 aa8.58□□□□□ -1.04
SHMT2-219ENST00000555563 TLX1NBP0CAT3 122 aa8.58□□□□□ -1.04
SHMT2-219ENST00000555563 Q6ZRP5 223 aa8.58□□□□□ -1.04
SHMT2-219ENST00000555563 Q8IZM0 81 aa8.58□□□□□ -1.04
SHMT2-219ENST00000555563 KRTAP29-1A8MX34 341 aaPredicted RBP8.57□□□□□ -1.04
SHMT2-219ENST00000555563 SMIM1B2RUZ4 78 aa8.57□□□□□ -1.04
SHMT2-219ENST00000555563 RAB5BP61020 215 aa8.57□□□□□ -1.04
SHMT2-219ENST00000555563 PRR3P79522 188 aaKnown RBP8.57□□□□□ -1.04
SHMT2-219ENST00000555563 C9orf116Q5BN46 136 aaPredicted RBP8.57□□□□□ -1.04
SHMT2-219ENST00000555563 CKS1BP61024 79 aa8.56□□□□□ -1.04
SHMT2-219ENST00000555563 PDZD11Q5EBL8 140 aa8.56□□□□□ -1.04
SHMT2-219ENST00000555563 NDUFA6P56556 154 aa8.55□□□□□ -1.04
SHMT2-219ENST00000555563 GAGE2EQ4V326 116 aa8.55□□□□□ -1.04
SHMT2-219ENST00000555563 C6orf226Q5I0X4 101 aa8.55□□□□□ -1.04
SHMT2-219ENST00000555563 GAGE2DQ9UEU5 116 aa8.55□□□□□ -1.04
SHMT2-219ENST00000555563 FAM168BA1KXE4 195 aa8.54□□□□□ -1.04
SHMT2-219ENST00000555563 NDUFC2-KCTD14E9PQ53 114 aa8.54□□□□□ -1.04
SHMT2-219ENST00000555563 SPINK8P0C7L1 97 aa8.54□□□□□ -1.04
SHMT2-219ENST00000555563 IGLC3P0DOY3 106 aa8.54□□□□□ -1.04
SHMT2-219ENST00000555563 F8VRH5 84 aa8.53□□□□□ -1.04
SHMT2-219ENST00000555563 ATP5LO75964 103 aa8.53□□□□□ -1.04
SHMT2-219ENST00000555563 TRGC2P03986 189 aa8.53□□□□□ -1.04
SHMT2-219ENST00000555563 CHCHD1Q96BP2 118 aaKnown RBP8.53□□□□□ -1.04
SHMT2-219ENST00000555563 CXCL5P42830 114 aa8.52□□□□□ -1.05
SHMT2-219ENST00000555563 PHF5AQ7RTV0 110 aaKnown RBP8.52□□□□□ -1.05
SHMT2-219ENST00000555563 FAM19A5Q7Z5A7 132 aaPredicted RBP8.52□□□□□ -1.05
SHMT2-219ENST00000555563 COX7B2Q8TF08 81 aa8.52□□□□□ -1.05
SHMT2-219ENST00000555563 H3BRM9 83 aa8.51□□□□□ -1.05
SHMT2-219ENST00000555563 OXTP01178 125 aa8.51□□□□□ -1.05
SHMT2-219ENST00000555563 ZNF22P17026 224 aaPredicted RBP8.51□□□□□ -1.05
SHMT2-219ENST00000555563 TMEM238LA0A1B0GVL6 79 aa8.5□□□□□ -1.05
SHMT2-219ENST00000555563 C9orf129Q5T035 196 aaKnown RBP8.5□□□□□ -1.05
SHMT2-219ENST00000555563 BAGE3Q86Y29 109 aa8.5□□□□□ -1.05
SHMT2-219ENST00000555563 KRTAP7-1Q8IUC3 87 aa8.5□□□□□ -1.05
SHMT2-219ENST00000555563 C11orf86A6NJI1 115 aa8.49□□□□□ -1.05
SHMT2-219ENST00000555563 COLCA2A8K830 154 aa8.49□□□□□ -1.05
SHMT2-219ENST00000555563 HSBP1O75506 76 aa8.49□□□□□ -1.05
SHMT2-219ENST00000555563 M0QXV9 152 aa8.48□□□□□ -1.05
SHMT2-219ENST00000555563 LINC00310P59036 64 aa8.48□□□□□ -1.05
SHMT2-219ENST00000555563 SERTAD4-AS1Q5TG53 156 aa8.48□□□□□ -1.05
SHMT2-219ENST00000555563 FAM19A2Q8N3H0 131 aa8.48□□□□□ -1.05
SHMT2-219ENST00000555563 IFI27L1Q96BM0 104 aa8.48□□□□□ -1.05
SHMT2-219ENST00000555563 XAGE1AQ9HD64 81 aa8.48□□□□□ -1.05
SHMT2-219ENST00000555563 PSORS1C2Q9UIG4 136 aa8.48□□□□□ -1.05
SHMT2-219ENST00000555563 IGLV5-39A0A0G2JS06 123 aa8.47□□□□□ -1.05
SHMT2-219ENST00000555563 SERF1AO75920 110 aa8.46□□□□□ -1.06
SHMT2-219ENST00000555563 TMEM170BQ5T4T1 132 aa8.46□□□□□ -1.06
SHMT2-219ENST00000555563 KRTAP11-1Q8IUC1 163 aa8.46□□□□□ -1.06
SHMT2-219ENST00000555563 CHTOPQ9Y3Y2 248 aaKnown RBP8.46□□□□□ -1.06
SHMT2-219ENST00000555563 PKHD1L1Q86WI1 4243 aa8.46□□□□□ -1.06
SHMT2-219ENST00000555563 TRAV12-1A0A0B4J245 112 aa8.45□□□□□ -1.06
SHMT2-219ENST00000555563 SCO1O75880 301 aa8.45□□□□□ -1.06
SHMT2-219ENST00000555563 SPINK6Q6UWN8 80 aa8.44□□□□□ -1.06
SHMT2-219ENST00000555563 UBR4Q5T4S7 5183 aa8.43□□□□□ -1.06
SHMT2-219ENST00000555563 MT1HL1P0DM35 61 aa8.43□□□□□ -1.06
SHMT2-219ENST00000555563 UBE2BP63146 152 aa8.43□□□□□ -1.06
SHMT2-219ENST00000555563 SRSF9Q13242 221 aaKnown RBP eCLIP8.43□□□□□ -1.06
SHMT2-219ENST00000555563 C1orf137Q5JT78 98 aa8.43□□□□□ -1.06
SHMT2-219ENST00000555563 HMCN2Q8NDA2 5059 aa8.43□□□□□ -1.06
SHMT2-219ENST00000555563 NUPR1O60356 82 aa8.42□□□□□ -1.06
SHMT2-219ENST00000555563 LRP1Q07954 4544 aaKnown RBP8.42□□□□□ -1.06
SHMT2-219ENST00000555563 H0Y8G0 127 aa8.41□□□□□ -1.06
SHMT2-219ENST00000555563 LEPROTL1O95214 131 aa8.41□□□□□ -1.06
SHMT2-219ENST00000555563 C21orf62-AS1Q17RA5 79 aa8.41□□□□□ -1.06
SHMT2-219ENST00000555563 TMEM223A0PJW6 202 aa8.4□□□□□ -1.06
SHMT2-219ENST00000555563 ODF1Q14990 250 aa8.4□□□□□ -1.06
SHMT2-219ENST00000555563 C22orf24Q9Y442 160 aa8.4□□□□□ -1.06
SHMT2-219ENST00000555563 IGLV7-43P04211 117 aa8.39□□□□□ -1.07
SHMT2-219ENST00000555563 PFN2P35080 140 aa8.39□□□□□ -1.07
SHMT2-219ENST00000555563 ZNF625Q96I27 306 aaPredicted RBP8.39□□□□□ -1.07
SHMT2-219ENST00000555563 ERG28Q9UKR5 140 aa8.39□□□□□ -1.07
SHMT2-219ENST00000555563 SFTA2Q6UW10 78 aa8.38□□□□□ -1.07
SHMT2-219ENST00000555563 REG3GQ6UW15 175 aa8.38□□□□□ -1.07
SHMT2-219ENST00000555563 LINC01600Q96MT4 127 aa8.38□□□□□ -1.07
SHMT2-219ENST00000555563 HIST1H2BKO60814 126 aa8.37□□□□□ -1.07
SHMT2-219ENST00000555563 HIST1H2BJP06899 126 aa8.37□□□□□ -1.07
SHMT2-219ENST00000555563 FABP4P15090 132 aa8.37□□□□□ -1.07
SHMT2-219ENST00000555563 HIST1H2BOP23527 126 aa8.37□□□□□ -1.07
SHMT2-219ENST00000555563 HIST1H2BBP33778 126 aa8.37□□□□□ -1.07
SHMT2-219ENST00000555563 HIST1H2BDP58876 126 aa8.37□□□□□ -1.07
SHMT2-219ENST00000555563 HIST1H2BCP62807 126 aa8.37□□□□□ -1.07
SHMT2-219ENST00000555563 HIST2H2BEQ16778 126 aa8.37□□□□□ -1.07
SHMT2-219ENST00000555563 LBHQ53QV2 105 aaPredicted RBP8.37□□□□□ -1.07
SHMT2-219ENST00000555563 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.37□□□□□ -1.07
SHMT2-219ENST00000555563 MRPL55Q7Z7F7 128 aaKnown RBP8.37□□□□□ -1.07
SHMT2-219ENST00000555563 HIST1H2BHQ93079 126 aa8.37□□□□□ -1.07
SHMT2-219ENST00000555563 HIST1H2BNQ99877 126 aa8.37□□□□□ -1.07
SHMT2-219ENST00000555563 HIST1H2BMQ99879 126 aa8.37□□□□□ -1.07
SHMT2-219ENST00000555563 TP73-AS1Q9UF72 201 aa8.37□□□□□ -1.07
SHMT2-219ENST00000555563 HSPB8Q9UJY1 196 aa8.37□□□□□ -1.07
SHMT2-219ENST00000555563 FAT3Q8TDW7 4589 aa8.37□□□□□ -1.07
SHMT2-219ENST00000555563 SND1-IT1Q9HBX3 110 aa8.36□□□□□ -1.07
SHMT2-219ENST00000555563 PLA2G2DQ9UNK4 145 aa8.36□□□□□ -1.07
SHMT2-219ENST00000555563 IGLV5-37A0A075B6J1 123 aa8.35□□□□□ -1.07
SHMT2-219ENST00000555563 COX17Q14061 63 aa8.35□□□□□ -1.07
SHMT2-219ENST00000555563 PLNP26678 52 aa8.34□□□□□ -1.07
SHMT2-219ENST00000555563 DIRC1Q969H9 104 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 86.2 ms