RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 ATP5G1P05496 136 aa12.76□□□□□ -0.37
PRPF40B-208ENST00000548436 TEX49A0A1B0GTD5 131 aa12.76□□□□□ -0.37
PRPF40B-208ENST00000548436 IBA57-AS1B1ANH7 110 aa12.76□□□□□ -0.37
PRPF40B-208ENST00000548436 COX7A2LO14548 114 aa12.76□□□□□ -0.37
PRPF40B-208ENST00000548436 LINC00269Q8N2A0 174 aa12.76□□□□□ -0.37
PRPF40B-208ENST00000548436 C11orf68Q9H3H3 251 aaKnown RBP12.76□□□□□ -0.37
PRPF40B-208ENST00000548436 IGKV2-28A0A075B6P5 120 aa12.74□□□□□ -0.37
PRPF40B-208ENST00000548436 H3BT86 120 aa12.74□□□□□ -0.37
PRPF40B-208ENST00000548436 IGKV2D-28P01615 120 aa12.74□□□□□ -0.37
PRPF40B-208ENST00000548436 PFN2P35080 140 aa12.74□□□□□ -0.37
PRPF40B-208ENST00000548436 C6orf226Q5I0X4 101 aa12.74□□□□□ -0.37
PRPF40B-208ENST00000548436 SND1-IT1Q9HBX3 110 aa12.74□□□□□ -0.37
PRPF40B-208ENST00000548436 SPART-AS1P0CW21 52 aa12.74□□□□□ -0.37
PRPF40B-208ENST00000548436 CCL18P55774 89 aa12.74□□□□□ -0.37
PRPF40B-208ENST00000548436 LINC00337Q8N6G1 96 aa12.74□□□□□ -0.37
PRPF40B-208ENST00000548436 HTN3P15516 51 aa12.73□□□□□ -0.37
PRPF40B-208ENST00000548436 TRAV13-2A0A0B4J235 113 aa12.72□□□□□ -0.37
PRPF40B-208ENST00000548436 UBE2WQ96B02 151 aa12.72□□□□□ -0.37
PRPF40B-208ENST00000548436 Q8IZM0 81 aa12.71□□□□□ -0.37
PRPF40B-208ENST00000548436 CRPP02741 224 aa12.71□□□□□ -0.38
PRPF40B-208ENST00000548436 ANGP03950 147 aaKnown RBP12.71□□□□□ -0.38
PRPF40B-208ENST00000548436 XGP55808 180 aa12.71□□□□□ -0.38
PRPF40B-208ENST00000548436 SCGB1A1P11684 91 aa12.7□□□□□ -0.38
PRPF40B-208ENST00000548436 LINC01561Q8N1V8 128 aa12.7□□□□□ -0.38
PRPF40B-208ENST00000548436 IGLV10-54A0A075B6I4 117 aa12.69□□□□□ -0.38
PRPF40B-208ENST00000548436 REG3AQ06141 175 aa12.69□□□□□ -0.38
PRPF40B-208ENST00000548436 CD164L2Q6UWJ8 174 aa12.69□□□□□ -0.38
PRPF40B-208ENST00000548436 CHCHD10Q8WYQ3 142 aaPredicted RBP12.69□□□□□ -0.38
PRPF40B-208ENST00000548436 MT-ATP8P03928 68 aa12.69□□□□□ -0.38
PRPF40B-208ENST00000548436 MRPL23Q16540 153 aaKnown RBP12.69□□□□□ -0.38
PRPF40B-208ENST00000548436 OXLD1Q5BKU9 147 aa12.69□□□□□ -0.38
PRPF40B-208ENST00000548436 FAM218AQ96MZ4 157 aa12.68□□□□□ -0.38
PRPF40B-208ENST00000548436 RPL28P46779 137 aaKnown RBP12.68□□□□□ -0.38
PRPF40B-208ENST00000548436 KIAA0087Q14695 138 aa12.67□□□□□ -0.38
PRPF40B-208ENST00000548436 KRTAP10-11P60412 298 aa12.66□□□□□ -0.38
PRPF40B-208ENST00000548436 LELP1Q5T871 98 aa12.65□□□□□ -0.38
PRPF40B-208ENST00000548436 TRACP01848 142 aa12.65□□□□□ -0.39
PRPF40B-208ENST00000548436 SMIM11BQ8TCY0 68 aa12.65□□□□□ -0.39
PRPF40B-208ENST00000548436 CKS1BP61024 79 aa12.64□□□□□ -0.39
PRPF40B-208ENST00000548436 TRAV8-4A0A0B4J246 113 aa12.63□□□□□ -0.39
PRPF40B-208ENST00000548436 RETNQ9HD89 108 aa12.63□□□□□ -0.39
PRPF40B-208ENST00000548436 MALP21145 153 aa12.62□□□□□ -0.39
PRPF40B-208ENST00000548436 DEFB121Q5J5C9 76 aa12.62□□□□□ -0.39
PRPF40B-208ENST00000548436 KRTAP24-1Q3LI83 254 aa12.61□□□□□ -0.39
PRPF40B-208ENST00000548436 CMYA5Q8N3K9 4069 aa12.61□□□□□ -0.39
PRPF40B-208ENST00000548436 CFAP161Q6P656 301 aa12.61□□□□□ -0.39
PRPF40B-208ENST00000548436 ANK2Q01484 3957 aa12.6□□□□□ -0.39
PRPF40B-208ENST00000548436 C22orf24Q9Y442 160 aa12.59□□□□□ -0.39
PRPF40B-208ENST00000548436 BAALC-AS2P0C853 105 aa12.58□□□□□ -0.39
PRPF40B-208ENST00000548436 CXCL5P42830 114 aa12.58□□□□□ -0.39
PRPF40B-208ENST00000548436 C9orf116Q5BN46 136 aaPredicted RBP12.58□□□□□ -0.39
PRPF40B-208ENST00000548436 LYPD5Q6UWN5 251 aa12.58□□□□□ -0.39
PRPF40B-208ENST00000548436 KLK12Q9UKR0 248 aa12.58□□□□□ -0.39
PRPF40B-208ENST00000548436 OR13C6PQ8NH95 151 aa12.58□□□□□ -0.4
PRPF40B-208ENST00000548436 Q9HAA7 133 aa12.58□□□□□ -0.4
PRPF40B-208ENST00000548436 PRR34Q9NV39 138 aa12.58□□□□□ -0.4
PRPF40B-208ENST00000548436 FBN1P35555 2871 aaKnown RBP12.57□□□□□ -0.4
PRPF40B-208ENST00000548436 A0A087WYN8 130 aa12.57□□□□□ -0.4
PRPF40B-208ENST00000548436 COX17Q14061 63 aa12.57□□□□□ -0.4
PRPF40B-208ENST00000548436 EGFEM1PQ0D2K5 195 aa12.56□□□□□ -0.4
PRPF40B-208ENST00000548436 ENHOQ6UWT2 76 aa12.56□□□□□ -0.4
PRPF40B-208ENST00000548436 PKD1L1Q8TDX9 2849 aa12.56□□□□□ -0.4
PRPF40B-208ENST00000548436 PRR3P79522 188 aaKnown RBP12.55□□□□□ -0.4
PRPF40B-208ENST00000548436 C6orf223Q8N319 242 aa12.55□□□□□ -0.4
PRPF40B-208ENST00000548436 KLK5Q9Y337 293 aaPredicted RBP12.55□□□□□ -0.4
PRPF40B-208ENST00000548436 H0YGX0 51 aa12.53□□□□□ -0.4
PRPF40B-208ENST00000548436 C10orf25Q5T742 122 aa12.53□□□□□ -0.4
PRPF40B-208ENST00000548436 LINC00526Q96FQ7 95 aa12.53□□□□□ -0.4
PRPF40B-208ENST00000548436 KPRPQ5T749 579 aaPredicted RBP12.53□□□□□ -0.4
PRPF40B-208ENST00000548436 Q6ZTC4 211 aa12.53□□□□□ -0.4
PRPF40B-208ENST00000548436 STAB1Q9NY15 2570 aa12.53□□□□□ -0.4
PRPF40B-208ENST00000548436 SPAG11BQ08648 103 aa12.52□□□□□ -0.4
PRPF40B-208ENST00000548436 UNQ6190/PRO20217Q6UXQ8 127 aa12.52□□□□□ -0.4
PRPF40B-208ENST00000548436 FAM240AA0A1B0GVK7 77 aa12.52□□□□□ -0.41
PRPF40B-208ENST00000548436 C3orf56Q8N813 242 aa12.52□□□□□ -0.41
PRPF40B-208ENST00000548436 NANOS2P60321 138 aaKnown RBP12.51□□□□□ -0.41
PRPF40B-208ENST00000548436 NDUFC2O95298 119 aa12.5□□□□□ -0.41
PRPF40B-208ENST00000548436 Q8NDZ9 215 aa12.5□□□□□ -0.41
PRPF40B-208ENST00000548436 H3BNG1 76 aa12.5□□□□□ -0.41
PRPF40B-208ENST00000548436 WFDC10BQ8IUB3 73 aa12.5□□□□□ -0.41
PRPF40B-208ENST00000548436 C15orf53Q8NAA6 179 aa12.5□□□□□ -0.41
PRPF40B-208ENST00000548436 SNCGO76070 127 aa12.49□□□□□ -0.41
PRPF40B-208ENST00000548436 DNAL4O96015 105 aa12.49□□□□□ -0.41
PRPF40B-208ENST00000548436 TENM3Q9P273 2699 aa12.49□□□□□ -0.41
PRPF40B-208ENST00000548436 LECT2O14960 151 aa12.49□□□□□ -0.41
PRPF40B-208ENST00000548436 DNAH3Q8TD57 4116 aa12.47□□□□□ -0.41
PRPF40B-208ENST00000548436 A0A0J9YWU9 116 aa12.46□□□□□ -0.41
PRPF40B-208ENST00000548436 TTC32Q5I0X7 151 aa12.46□□□□□ -0.41
PRPF40B-208ENST00000548436 NCR3O14931 201 aa12.44□□□□□ -0.42
PRPF40B-208ENST00000548436 C9orf129Q5T035 196 aaKnown RBP12.44□□□□□ -0.42
PRPF40B-208ENST00000548436 TMEM126AQ9H061 195 aa12.44□□□□□ -0.42
PRPF40B-208ENST00000548436 SLPIP03973 132 aa12.44□□□□□ -0.42
PRPF40B-208ENST00000548436 GAGE2BQ13066 116 aa12.43□□□□□ -0.42
PRPF40B-208ENST00000548436 ESRGQ1W209 222 aa12.43□□□□□ -0.42
PRPF40B-208ENST00000548436 GAGE2EQ4V326 116 aa12.43□□□□□ -0.42
PRPF40B-208ENST00000548436 GAGE2DQ9UEU5 116 aa12.43□□□□□ -0.42
PRPF40B-208ENST00000548436 A0A1B0GV72 72 aa12.42□□□□□ -0.42
PRPF40B-208ENST00000548436 ACYP1P07311 99 aa12.42□□□□□ -0.42
PRPF40B-208ENST00000548436 KRTAP26-1Q6PEX3 210 aa12.41□□□□□ -0.42
PRPF40B-208ENST00000548436 C6orf48Q9UBA6 75 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms