RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 GPHB5Q86YW7 130 aa3.99□□□□□ -1.77
LIMA1-203ENST00000547825 DEFB105AQ8NG35 78 aa3.99□□□□□ -1.77
LIMA1-203ENST00000547825 BRK1Q8WUW1 75 aa3.99□□□□□ -1.77
LIMA1-203ENST00000547825 SIRPDQ9H106 197 aa3.99□□□□□ -1.77
LIMA1-203ENST00000547825 TSHBP01222 138 aa3.99□□□□□ -1.77
LIMA1-203ENST00000547825 PSMB8P28062 276 aa3.99□□□□□ -1.77
LIMA1-203ENST00000547825 ENHOQ6UWT2 76 aa3.99□□□□□ -1.77
LIMA1-203ENST00000547825 DPH3Q96FX2 82 aa3.99□□□□□ -1.77
LIMA1-203ENST00000547825 IGHV4-30-2A0A087WSY4 118 aa3.99□□□□□ -1.77
LIMA1-203ENST00000547825 MPLKIPQ8TAP9 179 aa3.99□□□□□ -1.77
LIMA1-203ENST00000547825 ODF3BA8MYP8 253 aa3.98□□□□□ -1.77
LIMA1-203ENST00000547825 Q6ZTI0 123 aa3.98□□□□□ -1.77
LIMA1-203ENST00000547825 SNURFQ9Y675 71 aa3.98□□□□□ -1.77
LIMA1-203ENST00000547825 ATRQ13535 2644 aa3.98□□□□□ -1.77
LIMA1-203ENST00000547825 MAST4O15021 2626 aa3.98□□□□□ -1.77
LIMA1-203ENST00000547825 DEFB4AO15263 64 aa3.98□□□□□ -1.77
LIMA1-203ENST00000547825 FAM19A5Q7Z5A7 132 aaPredicted RBP3.98□□□□□ -1.77
LIMA1-203ENST00000547825 LINC01619G3V211 115 aa3.97□□□□□ -1.77
LIMA1-203ENST00000547825 H0YGX0 51 aa3.97□□□□□ -1.77
LIMA1-203ENST00000547825 C5orf47Q569G3 176 aa3.97□□□□□ -1.77
LIMA1-203ENST00000547825 ODF3Q96PU9 254 aa3.97□□□□□ -1.77
LIMA1-203ENST00000547825 F5H768 121 aa3.97□□□□□ -1.77
LIMA1-203ENST00000547825 IGHG2P01859 326 aa3.97□□□□□ -1.77
LIMA1-203ENST00000547825 LMO4P61968 165 aa3.97□□□□□ -1.77
LIMA1-203ENST00000547825 DNAH7Q8WXX0 4024 aa3.96□□□□□ -1.77
LIMA1-203ENST00000547825 FSHBP01225 129 aa3.96□□□□□ -1.78
LIMA1-203ENST00000547825 COX7CP15954 63 aa3.96□□□□□ -1.78
LIMA1-203ENST00000547825 LINC00526Q96FQ7 95 aa3.96□□□□□ -1.78
LIMA1-203ENST00000547825 VPREB3Q9UKI3 123 aa3.96□□□□□ -1.78
LIMA1-203ENST00000547825 KLK9Q2XQG4 91 aa3.96□□□□□ -1.78
LIMA1-203ENST00000547825 UPK3BQ9BT76 320 aa3.96□□□□□ -1.78
LIMA1-203ENST00000547825 Q9UF83 564 aa3.96□□□□□ -1.78
LIMA1-203ENST00000547825 K7EQD1 137 aa3.95□□□□□ -1.78
LIMA1-203ENST00000547825 SMIM9A6NGZ8 99 aa3.95□□□□□ -1.78
LIMA1-203ENST00000547825 CCL24O00175 119 aa3.95□□□□□ -1.78
LIMA1-203ENST00000547825 CXCL5P42830 114 aa3.95□□□□□ -1.78
LIMA1-203ENST00000547825 PRR3P79522 188 aaKnown RBP3.95□□□□□ -1.78
LIMA1-203ENST00000547825 K7EQG2 157 aa3.95□□□□□ -1.78
LIMA1-203ENST00000547825 COX6A2Q02221 97 aa3.95□□□□□ -1.78
LIMA1-203ENST00000547825 RPL18AQ02543 176 aaKnown RBP3.95□□□□□ -1.78
LIMA1-203ENST00000547825 SPANXCQ9NY87 97 aa3.95□□□□□ -1.78
LIMA1-203ENST00000547825 DNAH6Q9C0G6 4158 aa3.95□□□□□ -1.78
LIMA1-203ENST00000547825 LOC100131303A0A0U1RQF7 123 aa3.94□□□□□ -1.78
LIMA1-203ENST00000547825 SERP2Q8N6R1 65 aa3.94□□□□□ -1.78
LIMA1-203ENST00000547825 SMIM11BQ8TCY0 68 aa3.94□□□□□ -1.78
LIMA1-203ENST00000547825 DCANP1Q8TF63 244 aa3.94□□□□□ -1.78
LIMA1-203ENST00000547825 TRBV6-5A0A0K0K1A5 114 aa3.94□□□□□ -1.78
LIMA1-203ENST00000547825 KLLNB2CW77 178 aa3.94□□□□□ -1.78
LIMA1-203ENST00000547825 EBI3Q14213 229 aa3.94□□□□□ -1.78
LIMA1-203ENST00000547825 Q8N2B8 174 aa3.94□□□□□ -1.78
LIMA1-203ENST00000547825 Q8N6K4 173 aa3.94□□□□□ -1.78
LIMA1-203ENST00000547825 SPANXDQ9BXN6 97 aa3.94□□□□□ -1.78
LIMA1-203ENST00000547825 K7EMT4 169 aa3.94□□□□□ -1.78
LIMA1-203ENST00000547825 NDUFA1O15239 70 aa3.94□□□□□ -1.78
LIMA1-203ENST00000547825 Q6Q795 121 aa3.94□□□□□ -1.78
LIMA1-203ENST00000547825 PRKDCP78527 4128 aaKnown RBP3.93□□□□□ -1.78
LIMA1-203ENST00000547825 LRCOL1A6NCL2 159 aa3.93□□□□□ -1.78
LIMA1-203ENST00000547825 LINC01546A6NGU7 62 aa3.93□□□□□ -1.78
LIMA1-203ENST00000547825 H3BUA1 57 aa3.93□□□□□ -1.78
LIMA1-203ENST00000547825 MRPS36P82909 103 aaKnown RBP3.93□□□□□ -1.78
LIMA1-203ENST00000547825 C6orf99Q4VX62 202 aa3.93□□□□□ -1.78
LIMA1-203ENST00000547825 LINC00269Q8N2A0 174 aa3.93□□□□□ -1.78
LIMA1-203ENST00000547825 UBE2D4Q9Y2X8 147 aa3.93□□□□□ -1.78
LIMA1-203ENST00000547825 FLNBO75369 2602 aaKnown RBP3.93□□□□□ -1.78
LIMA1-203ENST00000547825 HILS1P60008 231 aa3.93□□□□□ -1.78
LIMA1-203ENST00000547825 PRR4Q16378 134 aa3.93□□□□□ -1.78
LIMA1-203ENST00000547825 C18orf65Q6ZTR6 163 aa3.93□□□□□ -1.78
LIMA1-203ENST00000547825 Q75L30 129 aa3.93□□□□□ -1.78
LIMA1-203ENST00000547825 XAGE1AQ9HD64 81 aa3.93□□□□□ -1.78
LIMA1-203ENST00000547825 FAM236DA0A1B0GTK5 79 aa3.93□□□□□ -1.78
LIMA1-203ENST00000547825 FAM236CP0DP71 79 aa3.93□□□□□ -1.78
LIMA1-203ENST00000547825 LINC00242Q5T6M2 205 aa3.93□□□□□ -1.78
LIMA1-203ENST00000547825 COX8CQ7Z4L0 72 aa3.93□□□□□ -1.78
LIMA1-203ENST00000547825 KIR2DL5BQ8NHK3 375 aa3.93□□□□□ -1.78
LIMA1-203ENST00000547825 FLNAP21333 2647 aaKnown RBP3.93□□□□□ -1.78
LIMA1-203ENST00000547825 A0A087WYN8 130 aa3.92□□□□□ -1.78
LIMA1-203ENST00000547825 JMJD7-PLA2G4BH0Y9G9 81 aa3.92□□□□□ -1.78
LIMA1-203ENST00000547825 FAM19A1Q7Z5A9 133 aa3.92□□□□□ -1.78
LIMA1-203ENST00000547825 IMUPQ9GZP8 106 aa3.92□□□□□ -1.78
LIMA1-203ENST00000547825 CSDC2Q9Y534 153 aaKnown RBP3.92□□□□□ -1.78
LIMA1-203ENST00000547825 LYSTQ99698 3801 aa3.92□□□□□ -1.78
LIMA1-203ENST00000547825 TMEM258P61165 79 aa3.92□□□□□ -1.78
LIMA1-203ENST00000547825 LINC00846Q9NV44 126 aa3.92□□□□□ -1.78
LIMA1-203ENST00000547825 A6NDX4 124 aa3.92□□□□□ -1.78
LIMA1-203ENST00000547825 TMEM256-PLSCR3K7ERE1 68 aa3.92□□□□□ -1.78
LIMA1-203ENST00000547825 NREPQ16612 68 aa3.92□□□□□ -1.78
LIMA1-203ENST00000547825 XP32Q5T750 250 aa3.92□□□□□ -1.78
LIMA1-203ENST00000547825 C9orf85Q96MD7 179 aa3.92□□□□□ -1.78
LIMA1-203ENST00000547825 WFDC10AQ9H1F0 79 aa3.92□□□□□ -1.78
LIMA1-203ENST00000547825 DYNC2H1Q8NCM8 4307 aaKnown RBP3.92□□□□□ -1.78
LIMA1-203ENST00000547825 CCL18P55774 89 aa3.91□□□□□ -1.78
LIMA1-203ENST00000547825 SOSTDC1Q6X4U4 206 aa3.91□□□□□ -1.78
LIMA1-203ENST00000547825 PYGO1Q9Y3Y4 419 aa3.91□□□□□ -1.78
LIMA1-203ENST00000547825 IGHV4-31P0DP07 118 aa3.91□□□□□ -1.78
LIMA1-203ENST00000547825 KLK12Q9UKR0 248 aa3.91□□□□□ -1.78
LIMA1-203ENST00000547825 FAM240AA0A1B0GVK7 77 aa3.91□□□□□ -1.78
LIMA1-203ENST00000547825 A8MTW9 85 aa3.91□□□□□ -1.78
LIMA1-203ENST00000547825 LINC00315P59091 139 aa3.91□□□□□ -1.78
LIMA1-203ENST00000547825 KIF25-AS1Q9Y6Z4 181 aa3.91□□□□□ -1.78
LIMA1-203ENST00000547825 MGAM2Q2M2H8 2515 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms