RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 HMCN2Q8NDA2 5059 aa7.1□□□□□ -1.27
YBX3-216ENST00000544622 TNXBP22105 4242 aa7.1□□□□□ -1.27
YBX3-216ENST00000544622 PRR3P79522 188 aaKnown RBP7.1□□□□□ -1.27
YBX3-216ENST00000544622 RPL18AQ02543 176 aaKnown RBP7.09□□□□□ -1.27
YBX3-216ENST00000544622 PMVKQ15126 192 aa7.09□□□□□ -1.27
YBX3-216ENST00000544622 SMCO4Q9NRQ5 59 aa7.09□□□□□ -1.27
YBX3-216ENST00000544622 SMIM1B2RUZ4 78 aa7.08□□□□□ -1.28
YBX3-216ENST00000544622 NDUFC2-KCTD14E9PQ53 114 aa7.08□□□□□ -1.28
YBX3-216ENST00000544622 J3QL48 77 aa7.08□□□□□ -1.28
YBX3-216ENST00000544622 SRSF9Q13242 221 aaKnown RBP eCLIP7.08□□□□□ -1.28
YBX3-216ENST00000544622 PDZD11Q5EBL8 140 aa7.08□□□□□ -1.28
YBX3-216ENST00000544622 KRTAP7-1Q8IUC3 87 aa7.08□□□□□ -1.28
YBX3-216ENST00000544622 SLC7A5P1Q8MH63 180 aa7.08□□□□□ -1.28
YBX3-216ENST00000544622 GEMIN7Q9H840 131 aaKnown RBP7.08□□□□□ -1.28
YBX3-216ENST00000544622 C6orf226Q5I0X4 101 aa7.07□□□□□ -1.28
YBX3-216ENST00000544622 CBLN2Q8IUK8 224 aa7.07□□□□□ -1.28
YBX3-216ENST00000544622 FAM168BA1KXE4 195 aa7.06□□□□□ -1.28
YBX3-216ENST00000544622 HBDP02042 147 aa7.06□□□□□ -1.28
YBX3-216ENST00000544622 PRSS2P07478 247 aa7.06□□□□□ -1.28
YBX3-216ENST00000544622 IGLC3P0DOY3 106 aa7.06□□□□□ -1.28
YBX3-216ENST00000544622 RAB5BP61020 215 aa7.06□□□□□ -1.28
YBX3-216ENST00000544622 C9orf129Q5T035 196 aaKnown RBP7.06□□□□□ -1.28
YBX3-216ENST00000544622 LINC00469Q8N7U9 141 aa7.06□□□□□ -1.28
YBX3-216ENST00000544622 PACRGQ96M98 296 aaPredicted RBP7.06□□□□□ -1.28
YBX3-216ENST00000544622 F8VRH5 84 aa7.05□□□□□ -1.28
YBX3-216ENST00000544622 MT1HL1P0DM35 61 aa7.05□□□□□ -1.28
YBX3-216ENST00000544622 CKS1BP61024 79 aa7.05□□□□□ -1.28
YBX3-216ENST00000544622 PMCHL1Q16048 86 aa7.05□□□□□ -1.28
YBX3-216ENST00000544622 GAGE2EQ4V326 116 aa7.05□□□□□ -1.28
YBX3-216ENST00000544622 PHF5AQ7RTV0 110 aaKnown RBP7.05□□□□□ -1.28
YBX3-216ENST00000544622 TOMM7Q9P0U1 55 aa7.05□□□□□ -1.28
YBX3-216ENST00000544622 GAGE2DQ9UEU5 116 aa7.05□□□□□ -1.28
YBX3-216ENST00000544622 CHCHD1Q96BP2 118 aaKnown RBP7.04□□□□□ -1.28
YBX3-216ENST00000544622 PSORS1C2Q9UIG4 136 aa7.04□□□□□ -1.28
YBX3-216ENST00000544622 IGLV5-39A0A0G2JS06 123 aa7.03□□□□□ -1.28
YBX3-216ENST00000544622 CXCL5P42830 114 aa7.03□□□□□ -1.28
YBX3-216ENST00000544622 SPINK6Q6UWN8 80 aa7.03□□□□□ -1.28
YBX3-216ENST00000544622 KRTAP11-1Q8IUC1 163 aa7.03□□□□□ -1.28
YBX3-216ENST00000544622 ATP5LO75964 103 aa7.02□□□□□ -1.29
YBX3-216ENST00000544622 ZNF22P17026 224 aaPredicted RBP7.02□□□□□ -1.29
YBX3-216ENST00000544622 ODF1Q14990 250 aa7.02□□□□□ -1.29
YBX3-216ENST00000544622 COX7B2Q8TF08 81 aa7.02□□□□□ -1.29
YBX3-216ENST00000544622 COLCA2A8K830 154 aa7.01□□□□□ -1.29
YBX3-216ENST00000544622 TRGC2P03986 189 aa7.01□□□□□ -1.29
YBX3-216ENST00000544622 SPINK8P0C7L1 97 aa7.01□□□□□ -1.29
YBX3-216ENST00000544622 LINC01600Q96MT4 127 aa7.01□□□□□ -1.29
YBX3-216ENST00000544622 H3BRM9 83 aa7□□□□□ -1.29
YBX3-216ENST00000544622 FAM19A5Q7Z5A7 132 aaPredicted RBP7□□□□□ -1.29
YBX3-216ENST00000544622 BAGE3Q86Y29 109 aa7□□□□□ -1.29
YBX3-216ENST00000544622 TRAV12-1A0A0B4J245 112 aa6.99□□□□□ -1.29
YBX3-216ENST00000544622 NDUFA6P56556 154 aa6.99□□□□□ -1.29
YBX3-216ENST00000544622 LINC00310P59036 64 aa6.99□□□□□ -1.29
YBX3-216ENST00000544622 SERTAD4-AS1Q5TG53 156 aa6.99□□□□□ -1.29
YBX3-216ENST00000544622 C11orf86A6NJI1 115 aa6.98□□□□□ -1.29
YBX3-216ENST00000544622 M0QXV9 152 aa6.98□□□□□ -1.29
YBX3-216ENST00000544622 C1orf137Q5JT78 98 aa6.98□□□□□ -1.29
YBX3-216ENST00000544622 IFI27L1Q96BM0 104 aa6.98□□□□□ -1.29
YBX3-216ENST00000544622 XAGE1AQ9HD64 81 aa6.98□□□□□ -1.29
YBX3-216ENST00000544622 C22orf24Q9Y442 160 aa6.98□□□□□ -1.29
YBX3-216ENST00000544622 IGLV7-43P04211 117 aa6.97□□□□□ -1.29
YBX3-216ENST00000544622 KRTAP10-8P60410 259 aa6.97□□□□□ -1.29
YBX3-216ENST00000544622 FAM19A2Q8N3H0 131 aa6.97□□□□□ -1.29
YBX3-216ENST00000544622 PLA2G2DQ9UNK4 145 aa6.97□□□□□ -1.29
YBX3-216ENST00000544622 UBR4Q5T4S7 5183 aa6.96□□□□□ -1.3
YBX3-216ENST00000544622 NUPR1O60356 82 aa6.96□□□□□ -1.3
YBX3-216ENST00000544622 HSBP1O75506 76 aa6.96□□□□□ -1.3
YBX3-216ENST00000544622 TP73-AS1Q9UF72 201 aa6.96□□□□□ -1.3
YBX3-216ENST00000544622 CHTOPQ9Y3Y2 248 aaKnown RBP6.96□□□□□ -1.3
YBX3-216ENST00000544622 TMEM223A0PJW6 202 aa6.95□□□□□ -1.3
YBX3-216ENST00000544622 REG3GQ6UW15 175 aa6.95□□□□□ -1.3
YBX3-216ENST00000544622 ZNF625Q96I27 306 aaPredicted RBP6.95□□□□□ -1.3
YBX3-216ENST00000544622 SERF1AO75920 110 aa6.94□□□□□ -1.3
YBX3-216ENST00000544622 TMEM170BQ5T4T1 132 aa6.94□□□□□ -1.3
YBX3-216ENST00000544622 IGLV5-37A0A075B6J1 123 aa6.93□□□□□ -1.3
YBX3-216ENST00000544622 COX17Q14061 63 aa6.93□□□□□ -1.3
YBX3-216ENST00000544622 LEPROTL1O95214 131 aa6.92□□□□□ -1.3
YBX3-216ENST00000544622 UBE2BP63146 152 aa6.92□□□□□ -1.3
YBX3-216ENST00000544622 LBHQ53QV2 105 aaPredicted RBP6.92□□□□□ -1.3
YBX3-216ENST00000544622 SFTA2Q6UW10 78 aa6.92□□□□□ -1.3
YBX3-216ENST00000544622 MRPL55Q7Z7F7 128 aaKnown RBP6.92□□□□□ -1.3
YBX3-216ENST00000544622 ERG28Q9UKR5 140 aa6.92□□□□□ -1.3
YBX3-216ENST00000544622 H0Y9J4 135 aa6.91□□□□□ -1.3
YBX3-216ENST00000544622 PFN2P35080 140 aa6.91□□□□□ -1.3
YBX3-216ENST00000544622 DIRC1Q969H9 104 aa6.91□□□□□ -1.3
YBX3-216ENST00000544622 LINC00167Q96N53 147 aa6.91□□□□□ -1.3
YBX3-216ENST00000544622 SCO1O75880 301 aa6.9□□□□□ -1.3
YBX3-216ENST00000544622 SND1-IT1Q9HBX3 110 aa6.9□□□□□ -1.3
YBX3-216ENST00000544622 ZNF861PO60384 105 aa6.89□□□□□ -1.31
YBX3-216ENST00000544622 KRTAP1-4P0C5Y4 121 aa6.89□□□□□ -1.31
YBX3-216ENST00000544622 LRP2P98164 4655 aa6.88□□□□□ -1.31
YBX3-216ENST00000544622 HIST1H2BKO60814 126 aa6.88□□□□□ -1.31
YBX3-216ENST00000544622 HIST1H2BJP06899 126 aa6.88□□□□□ -1.31
YBX3-216ENST00000544622 VPREB1P12018 145 aa6.88□□□□□ -1.31
YBX3-216ENST00000544622 HIST1H2BOP23527 126 aa6.88□□□□□ -1.31
YBX3-216ENST00000544622 HIST1H2BBP33778 126 aa6.88□□□□□ -1.31
YBX3-216ENST00000544622 HIST1H2BDP58876 126 aa6.88□□□□□ -1.31
YBX3-216ENST00000544622 HIST1H2BCP62807 126 aa6.88□□□□□ -1.31
YBX3-216ENST00000544622 HIST2H2BEQ16778 126 aa6.88□□□□□ -1.31
YBX3-216ENST00000544622 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.88□□□□□ -1.31
YBX3-216ENST00000544622 Q8NDZ9 215 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms