RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 FHL2Q14192 279 aa9.09□□□□□ -0.95
SFSWAP-209ENST00000540469 UPK3BQ9BT76 320 aa9.08□□□□□ -0.96
SFSWAP-209ENST00000540469 GCN1Q92616 2671 aaKnown RBP9.08□□□□□ -0.96
SFSWAP-209ENST00000540469 IBA57-AS1B1ANH7 110 aa9.08□□□□□ -0.96
SFSWAP-209ENST00000540469 ZANQ9Y493 2812 aa9.07□□□□□ -0.96
SFSWAP-209ENST00000540469 FAM19A3Q7Z5A8 133 aa9.07□□□□□ -0.96
SFSWAP-209ENST00000540469 A0A0U1RQV1 116 aa9.07□□□□□ -0.96
SFSWAP-209ENST00000540469 JMJD7-PLA2G4BH0Y9G9 81 aa9.07□□□□□ -0.96
SFSWAP-209ENST00000540469 WIPF1O43516 503 aa9.07□□□□□ -0.96
SFSWAP-209ENST00000540469 RPL35AP18077 110 aaKnown RBP9.07□□□□□ -0.96
SFSWAP-209ENST00000540469 LINC00336Q6ZUF6 198 aa9.06□□□□□ -0.96
SFSWAP-209ENST00000540469 TENM4Q6N022 2769 aa9.06□□□□□ -0.96
SFSWAP-209ENST00000540469 NDUFC2O95298 119 aa9.05□□□□□ -0.96
SFSWAP-209ENST00000540469 XCL1P47992 114 aa9.05□□□□□ -0.96
SFSWAP-209ENST00000540469 ZNF843Q8N446 348 aa9.05□□□□□ -0.96
SFSWAP-209ENST00000540469 C11orf44Q8N8P7 122 aa9.05□□□□□ -0.96
SFSWAP-209ENST00000540469 IGLV4-60A0A075B6I1 120 aa9.05□□□□□ -0.96
SFSWAP-209ENST00000540469 TRBV6-4A0A1B0GX49 114 aa9.05□□□□□ -0.96
SFSWAP-209ENST00000540469 ANKRD17O75179 2603 aaKnown RBP9.05□□□□□ -0.96
SFSWAP-209ENST00000540469 FAM236DA0A1B0GTK5 79 aa9.05□□□□□ -0.96
SFSWAP-209ENST00000540469 J3QLI3 93 aa9.05□□□□□ -0.96
SFSWAP-209ENST00000540469 FAM236CP0DP71 79 aa9.05□□□□□ -0.96
SFSWAP-209ENST00000540469 CLPSL2Q6UWE3 100 aa9.05□□□□□ -0.96
SFSWAP-209ENST00000540469 C1orf158Q8N1D5 194 aa9.05□□□□□ -0.96
SFSWAP-209ENST00000540469 MTORP42345 2549 aa9.04□□□□□ -0.96
SFSWAP-209ENST00000540469 PRR3P79522 188 aaKnown RBP9.04□□□□□ -0.96
SFSWAP-209ENST00000540469 HAMPP81172 84 aa9.04□□□□□ -0.96
SFSWAP-209ENST00000540469 ITPR2Q14571 2701 aa9.04□□□□□ -0.96
SFSWAP-209ENST00000540469 ATP5EP2Q5VTU8 51 aa9.04□□□□□ -0.96
SFSWAP-209ENST00000540469 OBSCN-AS1Q96MR7 158 aa9.04□□□□□ -0.96
SFSWAP-209ENST00000540469 A0A1W2PRX2 142 aa9.04□□□□□ -0.96
SFSWAP-209ENST00000540469 A8MTW9 85 aa9.04□□□□□ -0.96
SFSWAP-209ENST00000540469 TMEM256-PLSCR3K7ERE1 68 aa9.04□□□□□ -0.96
SFSWAP-209ENST00000540469 LAMTOR3Q9UHA4 124 aa9.04□□□□□ -0.96
SFSWAP-209ENST00000540469 FN1P02751 2386 aaKnown RBP9.03□□□□□ -0.96
SFSWAP-209ENST00000540469 DEFB114Q30KQ6 69 aa9.03□□□□□ -0.96
SFSWAP-209ENST00000540469 ZNF702PQ9H963 129 aa9.02□□□□□ -0.96
SFSWAP-209ENST00000540469 IGHV3OR16-9A0A0B4J2B5 98 aa9.01□□□□□ -0.97
SFSWAP-209ENST00000540469 ODF3L2Q3SX64 289 aa9.01□□□□□ -0.97
SFSWAP-209ENST00000540469 FBN2P35556 2912 aa9.01□□□□□ -0.97
SFSWAP-209ENST00000540469 Q8N814 137 aa9.01□□□□□ -0.97
SFSWAP-209ENST00000540469 LINC01356Q8N9X3 169 aa9.01□□□□□ -0.97
SFSWAP-209ENST00000540469 NBPF19A0A087WUL8 3843 aa9.01□□□□□ -0.97
SFSWAP-209ENST00000540469 A0A087WZ39 114 aa9□□□□□ -0.97
SFSWAP-209ENST00000540469 TRBV6-8A0A0A6YYG3 113 aa8.99□□□□□ -0.97
SFSWAP-209ENST00000540469 SS18Q15532 418 aa8.99□□□□□ -0.97
SFSWAP-209ENST00000540469 SNURFQ9Y675 71 aa8.99□□□□□ -0.97
SFSWAP-209ENST00000540469 NDUFC2-KCTD14E9PQ53 114 aa8.98□□□□□ -0.97
SFSWAP-209ENST00000540469 C6orf99Q4VX62 202 aa8.98□□□□□ -0.97
SFSWAP-209ENST00000540469 RBM3P98179 157 aaKnown RBP8.97□□□□□ -0.97
SFSWAP-209ENST00000540469 LINC00959A0A1B0GUT2 108 aa8.97□□□□□ -0.97
SFSWAP-209ENST00000540469 DEFB130BP0DP73 79 aa8.97□□□□□ -0.97
SFSWAP-209ENST00000540469 DEFB130AP0DP74 79 aa8.97□□□□□ -0.97
SFSWAP-209ENST00000540469 A0A096LPF7 62 aa8.96□□□□□ -0.98
SFSWAP-209ENST00000540469 PLA2G2AP14555 144 aa8.96□□□□□ -0.98
SFSWAP-209ENST00000540469 BRK1Q8WUW1 75 aa8.96□□□□□ -0.98
SFSWAP-209ENST00000540469 C4orf3Q8WVX3 66 aa8.96□□□□□ -0.98
SFSWAP-209ENST00000540469 UBR5O95071 2799 aaPredicted RBP8.95□□□□□ -0.98
SFSWAP-209ENST00000540469 C16orf74Q96GX8 76 aa8.95□□□□□ -0.98
SFSWAP-209ENST00000540469 LY6G6DO95868 133 aa8.94□□□□□ -0.98
SFSWAP-209ENST00000540469 TRAV7A0A075B6U4 112 aa8.94□□□□□ -0.98
SFSWAP-209ENST00000540469 Q6YL49 198 aa8.94□□□□□ -0.98
SFSWAP-209ENST00000540469 SERP1Q9Y6X1 66 aa8.94□□□□□ -0.98
SFSWAP-209ENST00000540469 APCP25054 2843 aa8.93□□□□□ -0.98
SFSWAP-209ENST00000540469 IGLV10-54A0A075B6I4 117 aa8.93□□□□□ -0.98
SFSWAP-209ENST00000540469 IL17DQ8TAD2 202 aa8.93□□□□□ -0.98
SFSWAP-209ENST00000540469 WFDC10AQ9H1F0 79 aa8.93□□□□□ -0.98
SFSWAP-209ENST00000540469 LINC00474Q9P2X8 69 aa8.93□□□□□ -0.98
SFSWAP-209ENST00000540469 MRAPQ8TCY5 172 aa8.93□□□□□ -0.98
SFSWAP-209ENST00000540469 KRTAP10-9P60411 292 aa8.93□□□□□ -0.98
SFSWAP-209ENST00000540469 RMI2Q96E14 147 aa8.93□□□□□ -0.98
SFSWAP-209ENST00000540469 UNC79Q9P2D8 2635 aa8.92□□□□□ -0.98
SFSWAP-209ENST00000540469 SCXQ7RTU7 201 aa8.92□□□□□ -0.98
SFSWAP-209ENST00000540469 ITPR3Q14573 2671 aa8.92□□□□□ -0.98
SFSWAP-209ENST00000540469 F8WEM9 126 aa8.92□□□□□ -0.98
SFSWAP-209ENST00000540469 C9orf116Q5BN46 136 aaPredicted RBP8.92□□□□□ -0.98
SFSWAP-209ENST00000540469 TRBV10-3A0A0K0K1G6 114 aa8.92□□□□□ -0.98
SFSWAP-209ENST00000540469 PRO0628Q9UI54 55 aa8.92□□□□□ -0.98
SFSWAP-209ENST00000540469 FLNAP21333 2647 aaKnown RBP8.91□□□□□ -0.98
SFSWAP-209ENST00000540469 DSCR9P59020 149 aa8.91□□□□□ -0.98
SFSWAP-209ENST00000540469 LINC01547P58512 204 aaPredicted RBP8.91□□□□□ -0.98
SFSWAP-209ENST00000540469 Q8IZM0 81 aa8.91□□□□□ -0.98
SFSWAP-209ENST00000540469 KMT2BQ9UMN6 2715 aaPredicted RBP8.91□□□□□ -0.98
SFSWAP-209ENST00000540469 H7BZZ5 65 aa8.9□□□□□ -0.98
SFSWAP-209ENST00000540469 GYPEP15421 78 aa8.9□□□□□ -0.98
SFSWAP-209ENST00000540469 A0A096LNT2 108 aa8.9□□□□□ -0.99
SFSWAP-209ENST00000540469 TRAV10A0A0B4J240 114 aa8.9□□□□□ -0.99
SFSWAP-209ENST00000540469 LINC00269Q8N2A0 174 aa8.9□□□□□ -0.99
SFSWAP-209ENST00000540469 MPLKIPQ8TAP9 179 aa8.9□□□□□ -0.99
SFSWAP-209ENST00000540469 TEX15Q9BXT5 2789 aa8.9□□□□□ -0.99
SFSWAP-209ENST00000540469 NANOS2P60321 138 aaKnown RBP8.89□□□□□ -0.99
SFSWAP-209ENST00000540469 TEP1Q99973 2627 aaKnown RBP8.89□□□□□ -0.99
SFSWAP-209ENST00000540469 Q6ZVQ6 151 aa8.89□□□□□ -0.99
SFSWAP-209ENST00000540469 ZNF561-AS1K7EIQ3 104 aa8.89□□□□□ -0.99
SFSWAP-209ENST00000540469 LINC00167Q96N53 147 aa8.88□□□□□ -0.99
SFSWAP-209ENST00000540469 Q6ZQT0 140 aa8.88□□□□□ -0.99
SFSWAP-209ENST00000540469 Q6ZQY7 126 aa8.88□□□□□ -0.99
SFSWAP-209ENST00000540469 CCL24O00175 119 aa8.88□□□□□ -0.99
SFSWAP-209ENST00000540469 M0R2N4 97 aa8.87□□□□□ -0.99
SFSWAP-209ENST00000540469 SETXQ7Z333 2677 aaKnown RBP8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms