RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 PEA15Q15121 130 aa7.98□□□□□ -1.13
SS18-204ENST00000539244 MRPL55Q7Z7F7 128 aaKnown RBP7.98□□□□□ -1.13
SS18-204ENST00000539244 VCX2Q9H322 139 aa7.98□□□□□ -1.13
SS18-204ENST00000539244 TOMM7Q9P0U1 55 aa7.98□□□□□ -1.13
SS18-204ENST00000539244 IGIPA6NJ69 53 aa7.97□□□□□ -1.13
SS18-204ENST00000539244 CRYGAP11844 174 aa7.97□□□□□ -1.13
SS18-204ENST00000539244 Q8N8P6 123 aa7.97□□□□□ -1.13
SS18-204ENST00000539244 ALKBH7Q9BT30 221 aaPredicted RBP7.97□□□□□ -1.13
SS18-204ENST00000539244 MAP1LC3AQ9H492 121 aa7.97□□□□□ -1.13
SS18-204ENST00000539244 LOC389332A0A1B0GUA5 103 aa7.96□□□□□ -1.14
SS18-204ENST00000539244 F8VRH5 84 aa7.96□□□□□ -1.14
SS18-204ENST00000539244 K7EMI3 77 aa7.96□□□□□ -1.14
SS18-204ENST00000539244 ORMDL2Q53FV1 153 aa7.96□□□□□ -1.14
SS18-204ENST00000539244 TYMSOSQ8TAI1 123 aa7.96□□□□□ -1.14
SS18-204ENST00000539244 hCG_2014768A0A024R1R8 64 aa7.95□□□□□ -1.14
SS18-204ENST00000539244 HERVK_113P63121 156 aa7.95□□□□□ -1.14
SS18-204ENST00000539244 SEC11AP67812 179 aa7.95□□□□□ -1.14
SS18-204ENST00000539244 CDKN2A-AS1Q9UH64 79 aa7.95□□□□□ -1.14
SS18-204ENST00000539244 CXCL5P42830 114 aa7.94□□□□□ -1.14
SS18-204ENST00000539244 MUC17Q685J3 4493 aa7.93□□□□□ -1.14
SS18-204ENST00000539244 FAT4Q6V0I7 4981 aa7.93□□□□□ -1.14
SS18-204ENST00000539244 PAPPA-AS1Q5QFB9 102 aa7.93□□□□□ -1.14
SS18-204ENST00000539244 LINC00167Q96N53 147 aa7.93□□□□□ -1.14
SS18-204ENST00000539244 KRTAP13-1Q8IUC0 172 aa7.92□□□□□ -1.14
SS18-204ENST00000539244 TIMM17AQ99595 171 aa7.92□□□□□ -1.14
SS18-204ENST00000539244 IGLV5-37A0A075B6J1 123 aa7.91□□□□□ -1.14
SS18-204ENST00000539244 FAM229BQ4G0N7 80 aa7.91□□□□□ -1.14
SS18-204ENST00000539244 KRTAP13-2Q52LG2 175 aa7.91□□□□□ -1.14
SS18-204ENST00000539244 GEMIN7Q9H840 131 aaKnown RBP7.91□□□□□ -1.14
SS18-204ENST00000539244 NXT2Q9NPJ8 142 aaKnown RBP7.91□□□□□ -1.14
SS18-204ENST00000539244 RPL37AP8A6NKH3 93 aa7.9□□□□□ -1.14
SS18-204ENST00000539244 SMIM1B2RUZ4 78 aa7.9□□□□□ -1.14
SS18-204ENST00000539244 G0S2P27469 103 aa7.9□□□□□ -1.14
SS18-204ENST00000539244 ANAPC11Q9NYG5 84 aa7.9□□□□□ -1.14
SS18-204ENST00000539244 CTAG1AP78358 180 aa7.89□□□□□ -1.15
SS18-204ENST00000539244 TPRXLQ17RH7 258 aa7.89□□□□□ -1.15
SS18-204ENST00000539244 PDZD11Q5EBL8 140 aa7.89□□□□□ -1.15
SS18-204ENST00000539244 TOMM6Q96B49 74 aa7.89□□□□□ -1.15
SS18-204ENST00000539244 IGLV5-45A0A087WSX0 123 aa7.88□□□□□ -1.15
SS18-204ENST00000539244 LINC00304Q8N9R0 145 aa7.88□□□□□ -1.15
SS18-204ENST00000539244 ANAPC16Q96DE5 110 aa7.88□□□□□ -1.15
SS18-204ENST00000539244 TINCRA0A1B0GVN0 87 aa7.87□□□□□ -1.15
SS18-204ENST00000539244 PNRC1Q12796 327 aaPredicted RBP7.87□□□□□ -1.15
SS18-204ENST00000539244 COX7B2Q8TF08 81 aa7.87□□□□□ -1.15
SS18-204ENST00000539244 RETNLBQ9BQ08 111 aa7.87□□□□□ -1.15
SS18-204ENST00000539244 KRTAP9-6A0A140TA67 174 aa7.86□□□□□ -1.15
SS18-204ENST00000539244 GAGE10A6NGK3 116 aa7.86□□□□□ -1.15
SS18-204ENST00000539244 UBE2AP49459 152 aa7.86□□□□□ -1.15
SS18-204ENST00000539244 ERASQ7Z444 233 aa7.86□□□□□ -1.15
SS18-204ENST00000539244 MT-ND4LP03901 98 aa7.85□□□□□ -1.15
SS18-204ENST00000539244 NKAPP1Q8N9T2 125 aa7.85□□□□□ -1.15
SS18-204ENST00000539244 CDIP1Q9H305 208 aa7.85□□□□□ -1.15
SS18-204ENST00000539244 IGLV7-46A0A075B6I9 117 aa7.83□□□□□ -1.16
SS18-204ENST00000539244 LINC01549A6NIU2 74 aa7.83□□□□□ -1.16
SS18-204ENST00000539244 SCGB3A1Q96QR1 104 aa7.83□□□□□ -1.16
SS18-204ENST00000539244 IGKV2D-26A0A0A0MRZ7 120 aa7.82□□□□□ -1.16
SS18-204ENST00000539244 RAB5BP61020 215 aa7.82□□□□□ -1.16
SS18-204ENST00000539244 IGKV2-28A0A075B6P5 120 aa7.81□□□□□ -1.16
SS18-204ENST00000539244 IGKV2D-28P01615 120 aa7.81□□□□□ -1.16
SS18-204ENST00000539244 ADCYAP1P18509 176 aa7.81□□□□□ -1.16
SS18-204ENST00000539244 CST9LQ9H4G1 147 aa7.81□□□□□ -1.16
SS18-204ENST00000539244 LINC01546A6NGU7 62 aa7.8□□□□□ -1.16
SS18-204ENST00000539244 SCO1O75880 301 aa7.8□□□□□ -1.16
SS18-204ENST00000539244 ATP5LO75964 103 aa7.8□□□□□ -1.16
SS18-204ENST00000539244 SPINK8P0C7L1 97 aa7.8□□□□□ -1.16
SS18-204ENST00000539244 PRLHP81277 87 aa7.8□□□□□ -1.16
SS18-204ENST00000539244 MRPL18Q9H0U6 180 aaKnown RBP7.8□□□□□ -1.16
SS18-204ENST00000539244 A0A1B0GVG6 124 aa7.79□□□□□ -1.16
SS18-204ENST00000539244 VPREB1P12018 145 aa7.79□□□□□ -1.16
SS18-204ENST00000539244 TMEM126AQ9H061 195 aa7.79□□□□□ -1.16
SS18-204ENST00000539244 PMVKQ15126 192 aa7.78□□□□□ -1.16
SS18-204ENST00000539244 KIAA1644Q3SXP7 199 aa7.78□□□□□ -1.16
SS18-204ENST00000539244 FAM19A1Q7Z5A9 133 aa7.78□□□□□ -1.16
SS18-204ENST00000539244 PLEKHB2Q96CS7 222 aa7.78□□□□□ -1.16
SS18-204ENST00000539244 IGLV5-39A0A0G2JS06 123 aa7.77□□□□□ -1.17
SS18-204ENST00000539244 H3BRM9 83 aa7.77□□□□□ -1.17
SS18-204ENST00000539244 PPDPFQ9H3Y8 114 aa7.77□□□□□ -1.17
SS18-204ENST00000539244 TMEM238C9JI98 176 aa7.76□□□□□ -1.17
SS18-204ENST00000539244 M0R378 163 aa7.76□□□□□ -1.17
SS18-204ENST00000539244 PFN2P35080 140 aa7.76□□□□□ -1.17
SS18-204ENST00000539244 SPAG11AQ6PDA7 123 aa7.76□□□□□ -1.17
SS18-204ENST00000539244 C3orf22Q8N5N4 141 aa7.76□□□□□ -1.17
SS18-204ENST00000539244 GNB1LQ9BYB4 327 aa7.76□□□□□ -1.17
SS18-204ENST00000539244 SND1-IT1Q9HBX3 110 aa7.76□□□□□ -1.17
SS18-204ENST00000539244 TRAV9-1A0A075B6T8 112 aa7.75□□□□□ -1.17
SS18-204ENST00000539244 IGLC3P0DOY3 106 aa7.75□□□□□ -1.17
SS18-204ENST00000539244 RPL24P83731 157 aaKnown RBP7.75□□□□□ -1.17
SS18-204ENST00000539244 COX17Q14061 63 aa7.75□□□□□ -1.17
SS18-204ENST00000539244 FP248Q71RG6 208 aaPredicted RBP7.74□□□□□ -1.17
SS18-204ENST00000539244 CBLN2Q8IUK8 224 aa7.74□□□□□ -1.17
SS18-204ENST00000539244 ERG28Q9UKR5 140 aa7.74□□□□□ -1.17
SS18-204ENST00000539244 Q8NDZ9 215 aa7.73□□□□□ -1.17
SS18-204ENST00000539244 ZNF22P17026 224 aaPredicted RBP7.71□□□□□ -1.18
SS18-204ENST00000539244 SPRR4Q96PI1 79 aa7.71□□□□□ -1.18
SS18-204ENST00000539244 HIGD2AQ9BW72 106 aa7.71□□□□□ -1.18
SS18-204ENST00000539244 RAB14P61106 215 aa7.7□□□□□ -1.18
SS18-204ENST00000539244 KRTAP13-3Q3SY46 172 aa7.7□□□□□ -1.18
SS18-204ENST00000539244 ASB16-AS1Q495Z4 193 aa7.7□□□□□ -1.18
SS18-204ENST00000539244 SFTA2Q6UW10 78 aa7.7□□□□□ -1.18
SS18-204ENST00000539244 FA2HQ7L5A8 372 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms