RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	LINC00269	Q8N2A0	174 aa		7.82	□□□□□ -1.16
CAPN1-223	ENST00000533079	AMELX	Q99217	191 aa		7.82	□□□□□ -1.16
CAPN1-223	ENST00000533079	MRPL35	Q9NZE8	188 aa	Known RBP	7.82	□□□□□ -1.16
CAPN1-223	ENST00000533079	TRAV8-4	A0A0B4J246	113 aa		7.81	□□□□□ -1.16
CAPN1-223	ENST00000533079	RBX1	P62877	108 aa		7.81	□□□□□ -1.16
CAPN1-223	ENST00000533079	CLPSL2	Q6UWE3	100 aa		7.81	□□□□□ -1.16
CAPN1-223	ENST00000533079	SPINK6	Q6UWN8	80 aa		7.81	□□□□□ -1.16
CAPN1-223	ENST00000533079	IGLV4-3	A0A075B6K6	122 aa		7.8	□□□□□ -1.16
CAPN1-223	ENST00000533079	COX8A	P10176	69 aa		7.8	□□□□□ -1.16
CAPN1-223	ENST00000533079	REG3A	Q06141	175 aa		7.8	□□□□□ -1.16
CAPN1-223	ENST00000533079	VCX2	Q9H322	139 aa		7.8	□□□□□ -1.16
CAPN1-223	ENST00000533079	UBE2D4	Q9Y2X8	147 aa		7.8	□□□□□ -1.16
CAPN1-223	ENST00000533079	TRBV25-1	A0A075B6N4	114 aa		7.79	□□□□□ -1.16
CAPN1-223	ENST00000533079	SLC25A34	Q6PIV7	304 aa		7.79	□□□□□ -1.16
CAPN1-223	ENST00000533079	NTM-AS1	Q6ZSK4	140 aa		7.79	□□□□□ -1.16
CAPN1-223	ENST00000533079	FAM104A	Q969W3	186 aa		7.79	□□□□□ -1.16
CAPN1-223	ENST00000533079	IGLV10-54	A0A075B6I4	117 aa		7.78	□□□□□ -1.16
CAPN1-223	ENST00000533079	ANKRD39	Q53RE8	183 aa		7.78	□□□□□ -1.16
CAPN1-223	ENST00000533079	BOD1L2	Q8IYS8	172 aa		7.78	□□□□□ -1.16
CAPN1-223	ENST00000533079	STPG4	Q8N801	248 aa		7.78	□□□□□ -1.16
CAPN1-223	ENST00000533079	C14orf144	Q96I85	54 aa		7.78	□□□□□ -1.16
CAPN1-223	ENST00000533079	IGLV4-69	A0A075B6H9	119 aa		7.77	□□□□□ -1.17
CAPN1-223	ENST00000533079	SLPI	P03973	132 aa		7.77	□□□□□ -1.17
CAPN1-223	ENST00000533079	LBH	Q53QV2	105 aa	Predicted RBP	7.77	□□□□□ -1.17
CAPN1-223	ENST00000533079	ZC2HC1B	Q5TFG8	222 aa		7.77	□□□□□ -1.17
CAPN1-223	ENST00000533079	TMEM243	Q9BU79	118 aa		7.77	□□□□□ -1.17
CAPN1-223	ENST00000533079	KRTAP9-2	Q9BYQ4	174 aa		7.77	□□□□□ -1.17
CAPN1-223	ENST00000533079	LPA	P08519	4548 aa		7.77	□□□□□ -1.17
CAPN1-223	ENST00000533079	C11orf86	A6NJI1	115 aa		7.76	□□□□□ -1.17
CAPN1-223	ENST00000533079	FGF6	P10767	208 aa		7.76	□□□□□ -1.17
CAPN1-223	ENST00000533079	ZNF25	P17030	456 aa	Predicted RBP	7.76	□□□□□ -1.17
CAPN1-223	ENST00000533079	GAGE6	Q13070	117 aa		7.76	□□□□□ -1.17
CAPN1-223	ENST00000533079	FAM19A3	Q7Z5A8	133 aa		7.76	□□□□□ -1.17
CAPN1-223	ENST00000533079	PKIG	Q9Y2B9	76 aa		7.76	□□□□□ -1.17
CAPN1-223	ENST00000533079	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	7.75	□□□□□ -1.17
CAPN1-223	ENST00000533079		A0A0U1RQV1	116 aa		7.75	□□□□□ -1.17
CAPN1-223	ENST00000533079	IGKV2-29	A2NJV5	120 aa	Predicted RBP	7.75	□□□□□ -1.17
CAPN1-223	ENST00000533079		E9PLD3	99 aa		7.75	□□□□□ -1.17
CAPN1-223	ENST00000533079	COX6A2	Q02221	97 aa		7.75	□□□□□ -1.17
CAPN1-223	ENST00000533079	CFAP161	Q6P656	301 aa		7.75	□□□□□ -1.17
CAPN1-223	ENST00000533079	OPRPN	Q99935	248 aa	Predicted RBP	7.75	□□□□□ -1.17
CAPN1-223	ENST00000533079	LINC00474	Q9P2X8	69 aa		7.75	□□□□□ -1.17
CAPN1-223	ENST00000533079		A0A1B0GUV1	79 aa		7.74	□□□□□ -1.17
CAPN1-223	ENST00000533079	TINCR	A0A1B0GVN0	87 aa		7.74	□□□□□ -1.17
CAPN1-223	ENST00000533079		M0R143	59 aa		7.74	□□□□□ -1.17
CAPN1-223	ENST00000533079	C2orf88	Q9BSF0	95 aa		7.74	□□□□□ -1.17
CAPN1-223	ENST00000533079	HERVK_113	P61574	105 aa		7.73	□□□□□ -1.17
CAPN1-223	ENST00000533079	SEC11A	P67812	179 aa		7.73	□□□□□ -1.17
CAPN1-223	ENST00000533079		Q6ZRP5	223 aa		7.73	□□□□□ -1.17
CAPN1-223	ENST00000533079	C15orf56	Q8N910	161 aa		7.73	□□□□□ -1.17
CAPN1-223	ENST00000533079	CDC42SE2	Q9NRR3	84 aa		7.73	□□□□□ -1.17
CAPN1-223	ENST00000533079	HIGD1B	Q9P298	99 aa		7.73	□□□□□ -1.17
CAPN1-223	ENST00000533079	IGKV2-24	A0A0C4DH68	120 aa		7.72	□□□□□ -1.17
CAPN1-223	ENST00000533079	UBE2L6	O14933	153 aa		7.72	□□□□□ -1.17
CAPN1-223	ENST00000533079	UBE2D1	P51668	147 aa		7.72	□□□□□ -1.17
CAPN1-223	ENST00000533079	CTAG1A	P78358	180 aa		7.72	□□□□□ -1.17
CAPN1-223	ENST00000533079	SRSF9	Q13242	221 aa	Known RBP eCLIP	7.72	□□□□□ -1.17
CAPN1-223	ENST00000533079	OR5A1	Q8NGJ0	315 aa		7.72	□□□□□ -1.17
CAPN1-223	ENST00000533079	TMEM101	Q96IK0	257 aa		7.72	□□□□□ -1.17
CAPN1-223	ENST00000533079	IGLV5-45	A0A087WSX0	123 aa		7.71	□□□□□ -1.18
CAPN1-223	ENST00000533079	IGKV2D-26	A0A0A0MRZ7	120 aa		7.71	□□□□□ -1.18
CAPN1-223	ENST00000533079	NMU	P48645	174 aa		7.71	□□□□□ -1.18
CAPN1-223	ENST00000533079	AMMECR1L	Q6DCA0	310 aa		7.71	□□□□□ -1.18
CAPN1-223	ENST00000533079		Q6ZUT4	128 aa		7.71	□□□□□ -1.18
CAPN1-223	ENST00000533079	PCP2	Q8IVA1	136 aa		7.71	□□□□□ -1.18
CAPN1-223	ENST00000533079	MUC2	Q02817	5179 aa		7.71	□□□□□ -1.18
CAPN1-223	ENST00000533079	TMEM223	A0PJW6	202 aa		7.7	□□□□□ -1.18
CAPN1-223	ENST00000533079	ZNF22	P17026	224 aa	Predicted RBP	7.7	□□□□□ -1.18
CAPN1-223	ENST00000533079	C2orf91	Q6ZV80	131 aa		7.7	□□□□□ -1.18
CAPN1-223	ENST00000533079	SNHG12	Q9BXW3	62 aa		7.7	□□□□□ -1.18
CAPN1-223	ENST00000533079	IGLV4-60	A0A075B6I1	120 aa		7.69	□□□□□ -1.18
CAPN1-223	ENST00000533079		A0A096LNI7	61 aa		7.69	□□□□□ -1.18
CAPN1-223	ENST00000533079	GVQW2	A0A096LPI5	108 aa	Predicted RBP	7.69	□□□□□ -1.18
CAPN1-223	ENST00000533079	CCL25	O15444	150 aa		7.69	□□□□□ -1.18
CAPN1-223	ENST00000533079	HERVK_113	P63121	156 aa		7.69	□□□□□ -1.18
CAPN1-223	ENST00000533079	TMEM170B	Q5T4T1	132 aa		7.69	□□□□□ -1.18
CAPN1-223	ENST00000533079	MYMX	A0A1B0GTQ4	84 aa		7.68	□□□□□ -1.18
CAPN1-223	ENST00000533079	LEPROT	O15243	131 aa		7.68	□□□□□ -1.18
CAPN1-223	ENST00000533079	PLEKHB2	Q96CS7	222 aa		7.68	□□□□□ -1.18
CAPN1-223	ENST00000533079		H3BRM9	83 aa		7.67	□□□□□ -1.18
CAPN1-223	ENST00000533079	TAL2	Q16559	108 aa		7.67	□□□□□ -1.18
CAPN1-223	ENST00000533079	LINC00242	Q5T6M2	205 aa		7.67	□□□□□ -1.18
CAPN1-223	ENST00000533079	GEMIN7	Q9H840	131 aa	Known RBP	7.67	□□□□□ -1.18
CAPN1-223	ENST00000533079	PSORS1C2	Q9UIG4	136 aa		7.67	□□□□□ -1.18
CAPN1-223	ENST00000533079	IGHV1-58	A0A0C4DH39	117 aa		7.66	□□□□□ -1.18
CAPN1-223	ENST00000533079	GAGE12H	A6NDE8	117 aa		7.66	□□□□□ -1.18
CAPN1-223	ENST00000533079		J3QQQ9	107 aa		7.66	□□□□□ -1.18
CAPN1-223	ENST00000533079	HSD52	Q0P140	79 aa		7.66	□□□□□ -1.18
CAPN1-223	ENST00000533079	HIGD2B	Q4VC39	106 aa		7.66	□□□□□ -1.18
CAPN1-223	ENST00000533079	KRTAP9-6	A0A140TA67	174 aa		7.65	□□□□□ -1.18
CAPN1-223	ENST00000533079	RNASE13	Q5GAN3	156 aa	Known RBP	7.65	□□□□□ -1.18
CAPN1-223	ENST00000533079	BVES-AS1	Q5T3Y7	98 aa		7.65	□□□□□ -1.18
CAPN1-223	ENST00000533079	IGLV5-39	A0A0G2JS06	123 aa		7.64	□□□□□ -1.19
CAPN1-223	ENST00000533079	COL5A1-AS1	Q5SY13	56 aa		7.64	□□□□□ -1.19
CAPN1-223	ENST00000533079	LINC00469	Q8N7U9	141 aa		7.64	□□□□□ -1.19
CAPN1-223	ENST00000533079	CDKN2A-AS1	Q9UH64	79 aa		7.64	□□□□□ -1.19
CAPN1-223	ENST00000533079	ZNF815P	A8K554	130 aa		7.63	□□□□□ -1.19
CAPN1-223	ENST00000533079	LGALS3	P17931	250 aa	Known RBP	7.63	□□□□□ -1.19
CAPN1-223	ENST00000533079	LINC01561	Q8N1V8	128 aa		7.63	□□□□□ -1.19
CAPN1-223	ENST00000533079	TTTY13	Q9BZ97	58 aa		7.63	□□□□□ -1.19

Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms