RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	CIRBP	Q14011	172 aa	Known RBP	13.31	□□□□□ -0.28
CD44-222	ENST00000526025	FAM30A	Q9NZY2	134 aa		13.31	□□□□□ -0.28
CD44-222	ENST00000526025	TMEM223	A0PJW6	202 aa		13.3	□□□□□ -0.28
CD44-222	ENST00000526025	CKS1B	P61024	79 aa		13.3	□□□□□ -0.28
CD44-222	ENST00000526025	PET117	Q6UWS5	81 aa		13.3	□□□□□ -0.28
CD44-222	ENST00000526025	UNQ6190/PRO20217	Q6UXQ8	127 aa		13.3	□□□□□ -0.28
CD44-222	ENST00000526025	LOC107984640	A0A0U1RRK4	108 aa		13.29	□□□□□ -0.28
CD44-222	ENST00000526025	DPM2	O94777	84 aa		13.29	□□□□□ -0.28
CD44-222	ENST00000526025	C10orf25	Q5T742	122 aa		13.29	□□□□□ -0.28
CD44-222	ENST00000526025	C6orf48	Q9UBA6	75 aa		13.29	□□□□□ -0.28
CD44-222	ENST00000526025	TLX1NB	P0CAT3	122 aa		13.28	□□□□□ -0.28
CD44-222	ENST00000526025	XG	P55808	180 aa		13.28	□□□□□ -0.28
CD44-222	ENST00000526025	C2orf82	Q6UX34	121 aa		13.28	□□□□□ -0.28
CD44-222	ENST00000526025	HIST3H2BB	Q8N257	126 aa		13.28	□□□□□ -0.28
CD44-222	ENST00000526025	LINC00474	Q9P2X8	69 aa		13.28	□□□□□ -0.28
CD44-222	ENST00000526025	IGKC	P01834	107 aa		13.27	□□□□□ -0.29
CD44-222	ENST00000526025	LINC01545	Q5VT33	79 aa		13.27	□□□□□ -0.29
CD44-222	ENST00000526025	SFTA2	Q6UW10	78 aa		13.27	□□□□□ -0.29
CD44-222	ENST00000526025	C3orf79	P0CE67	100 aa		13.26	□□□□□ -0.29
CD44-222	ENST00000526025	HSPG2	P98160	4391 aa		13.26	□□□□□ -0.29
CD44-222	ENST00000526025	S100A2	P29034	98 aa		13.25	□□□□□ -0.29
CD44-222	ENST00000526025	SPACA4	Q8TDM5	124 aa		13.25	□□□□□ -0.29
CD44-222	ENST00000526025	AFDN-AS1	Q9Y6Z5	254 aa	Predicted RBP	13.25	□□□□□ -0.29
CD44-222	ENST00000526025		A0A096LNI7	61 aa		13.23	□□□□□ -0.29
CD44-222	ENST00000526025	PTTG1IP	P53801	180 aa		13.23	□□□□□ -0.29
CD44-222	ENST00000526025	SCX	Q7RTU7	201 aa		13.23	□□□□□ -0.29
CD44-222	ENST00000526025	HIST1H2BL	Q99880	126 aa		13.23	□□□□□ -0.29
CD44-222	ENST00000526025	PMCHL2	Q9BQD1	86 aa		13.23	□□□□□ -0.29
CD44-222	ENST00000526025	C5orf52	A6NGY3	159 aa		13.22	□□□□□ -0.29
CD44-222	ENST00000526025	PANO1	I0J062	215 aa		13.22	□□□□□ -0.29
CD44-222	ENST00000526025	KRTDAP	P60985	99 aa		13.22	□□□□□ -0.29
CD44-222	ENST00000526025	NDUFC2-KCTD14	E9PQ53	114 aa		13.21	□□□□□ -0.29
CD44-222	ENST00000526025	AKR1D1	P51857	326 aa		13.21	□□□□□ -0.29
CD44-222	ENST00000526025	HERVK_113	P61574	105 aa		13.21	□□□□□ -0.29
CD44-222	ENST00000526025	C20orf202	A1L168	122 aa		13.2	□□□□□ -0.3
CD44-222	ENST00000526025	CHTF8	P0CG12	524 aa		13.2	□□□□□ -0.3
CD44-222	ENST00000526025	SNRPE	P62304	92 aa	Known RBP	13.2	□□□□□ -0.3
CD44-222	ENST00000526025	CIRBP-AS1	Q8TBR5	109 aa		13.2	□□□□□ -0.3
CD44-222	ENST00000526025	HERC2	O95714	4834 aa		13.2	□□□□□ -0.3
CD44-222	ENST00000526025	IGKV2-24	A0A0C4DH68	120 aa		13.19	□□□□□ -0.3
CD44-222	ENST00000526025	RPL18A	Q02543	176 aa	Known RBP	13.19	□□□□□ -0.3
CD44-222	ENST00000526025	GAGE2B	Q13066	116 aa		13.18	□□□□□ -0.3
CD44-222	ENST00000526025		Q6ZRP5	223 aa		13.18	□□□□□ -0.3
CD44-222	ENST00000526025	ZNF625	Q96I27	306 aa	Predicted RBP	13.18	□□□□□ -0.3
CD44-222	ENST00000526025	PLAC8	Q9NZF1	115 aa		13.18	□□□□□ -0.3
CD44-222	ENST00000526025	LEPROT	O15243	131 aa		13.17	□□□□□ -0.3
CD44-222	ENST00000526025	MAJIN	Q3KP22	176 aa		13.17	□□□□□ -0.3
CD44-222	ENST00000526025	C9orf116	Q5BN46	136 aa	Predicted RBP	13.17	□□□□□ -0.3
CD44-222	ENST00000526025	PLEKHB2	Q96CS7	222 aa		13.17	□□□□□ -0.3
CD44-222	ENST00000526025		A0A087WYN8	130 aa		13.16	□□□□□ -0.3
CD44-222	ENST00000526025	EPM2A	B3EWF7	344 aa		13.15	□□□□□ -0.3
CD44-222	ENST00000526025	HAMP	P81172	84 aa		13.15	□□□□□ -0.3
CD44-222	ENST00000526025		E9PLD3	99 aa		13.14	□□□□□ -0.31
CD44-222	ENST00000526025	COX17	Q14061	63 aa		13.14	□□□□□ -0.31
CD44-222	ENST00000526025	DPH3	Q96FX2	82 aa		13.14	□□□□□ -0.31
CD44-222	ENST00000526025	HERV-K104	P63124	156 aa		13.13	□□□□□ -0.31
CD44-222	ENST00000526025	STPG4	Q8N801	248 aa		13.13	□□□□□ -0.31
CD44-222	ENST00000526025		J3QQQ9	107 aa		13.12	□□□□□ -0.31
CD44-222	ENST00000526025	NMU	P48645	174 aa		13.12	□□□□□ -0.31
CD44-222	ENST00000526025		Q8N1X5	172 aa		13.12	□□□□□ -0.31
CD44-222	ENST00000526025	ERG28	Q9UKR5	140 aa		13.12	□□□□□ -0.31
CD44-222	ENST00000526025	MYMX	A0A1B0GTQ4	84 aa		13.11	□□□□□ -0.31
CD44-222	ENST00000526025	GAGE2E	Q4V326	116 aa		13.11	□□□□□ -0.31
CD44-222	ENST00000526025	GAGE2D	Q9UEU5	116 aa		13.11	□□□□□ -0.31
CD44-222	ENST00000526025	NDUFA12	Q9UI09	145 aa		13.11	□□□□□ -0.31
CD44-222	ENST00000526025	TSPEAR-AS2	P59090	65 aa		13.1	□□□□□ -0.31
CD44-222	ENST00000526025	LINC00587	B1AMM8	73 aa		13.08	□□□□□ -0.32
CD44-222	ENST00000526025	LGALS3	P17931	250 aa	Known RBP	13.08	□□□□□ -0.32
CD44-222	ENST00000526025	C9orf129	Q5T035	196 aa	Known RBP	13.07	□□□□□ -0.32
CD44-222	ENST00000526025		A0A1W2PNN7	141 aa		13.06	□□□□□ -0.32
CD44-222	ENST00000526025	SMR3B	P02814	79 aa	Predicted RBP	13.06	□□□□□ -0.32
CD44-222	ENST00000526025	LINC00528	Q8N1L1	170 aa		13.06	□□□□□ -0.32
CD44-222	ENST00000526025	FAT1	Q14517	4588 aa		13.06	□□□□□ -0.32
CD44-222	ENST00000526025	FAM229A	H3BQW9	127 aa		13.05	□□□□□ -0.32
CD44-222	ENST00000526025	PFN2	P35080	140 aa		13.05	□□□□□ -0.32
CD44-222	ENST00000526025	KRTAP17-1	Q9BYP8	105 aa		13.03	□□□□□ -0.32
CD44-222	ENST00000526025	XAGE1A	Q9HD64	81 aa		13.03	□□□□□ -0.32
CD44-222	ENST00000526025	PLA2G2D	Q9UNK4	145 aa		13.03	□□□□□ -0.32
CD44-222	ENST00000526025	VPS13B	Q7Z7G8	4022 aa		13.02	□□□□□ -0.32
CD44-222	ENST00000526025	C7orf33	Q8WU49	177 aa		13.02	□□□□□ -0.33
CD44-222	ENST00000526025	FAM168B	A1KXE4	195 aa		13.01	□□□□□ -0.33
CD44-222	ENST00000526025	MEIG1	Q5JSS6	88 aa		13.01	□□□□□ -0.33
CD44-222	ENST00000526025		Q5VSD8	79 aa		13.01	□□□□□ -0.33
CD44-222	ENST00000526025	ATOH7	Q8N100	152 aa		13.01	□□□□□ -0.33
CD44-222	ENST00000526025	IGKV2D-26	A0A0A0MRZ7	120 aa		13	□□□□□ -0.33
CD44-222	ENST00000526025	PLA2G1B	P04054	148 aa	Known RBP	13	□□□□□ -0.33
CD44-222	ENST00000526025	LINC00158	P58513	81 aa		13	□□□□□ -0.33
CD44-222	ENST00000526025	SND1-IT1	Q9HBX3	110 aa		13	□□□□□ -0.33
CD44-222	ENST00000526025	TMA7	Q9Y2S6	64 aa	Known RBP	13	□□□□□ -0.33
CD44-222	ENST00000526025	SMIM13	P0DJ93	91 aa		12.99	□□□□□ -0.33
CD44-222	ENST00000526025	ANKRD39	Q53RE8	183 aa		12.99	□□□□□ -0.33
CD44-222	ENST00000526025	FAM19A5	Q7Z5A7	132 aa	Predicted RBP	12.99	□□□□□ -0.33
CD44-222	ENST00000526025	KRTAP7-1	Q8IUC3	87 aa		12.99	□□□□□ -0.33
CD44-222	ENST00000526025	SCGB1D1	O95968	90 aa		12.98	□□□□□ -0.33
CD44-222	ENST00000526025	TP73-AS1	Q9UF72	201 aa		12.98	□□□□□ -0.33
CD44-222	ENST00000526025	IGLV5-37	A0A075B6J1	123 aa		12.97	□□□□□ -0.33
CD44-222	ENST00000526025		A0A0J9YXY3	114 aa		12.96	□□□□□ -0.33
CD44-222	ENST00000526025	HSBP1L1	C9JCN9	74 aa		12.96	□□□□□ -0.33
CD44-222	ENST00000526025		M0QXV9	152 aa		12.96	□□□□□ -0.33
CD44-222	ENST00000526025	SERTAD4-AS1	Q5TG53	156 aa		12.96	□□□□□ -0.33

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