RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 REG3GQ6UW15 175 aa4.08□□□□□ -1.76
CD44-221ENST00000526000 CD164L2Q6UWJ8 174 aa4.08□□□□□ -1.76
CD44-221ENST00000526000 SPINK6Q6UWN8 80 aa4.08□□□□□ -1.76
CD44-221ENST00000526000 Q6ZUT4 128 aa4.08□□□□□ -1.76
CD44-221ENST00000526000 LINC01561Q8N1V8 128 aa4.08□□□□□ -1.76
CD44-221ENST00000526000 UBE2D1P51668 147 aa4.07□□□□□ -1.76
CD44-221ENST00000526000 NDUFA6P56556 154 aa4.07□□□□□ -1.76
CD44-221ENST00000526000 HERVK_113P63121 156 aa4.07□□□□□ -1.76
CD44-221ENST00000526000 FAM104AQ969W3 186 aa4.07□□□□□ -1.76
CD44-221ENST00000526000 IFI27L1Q96BM0 104 aa4.07□□□□□ -1.76
CD44-221ENST00000526000 CST9LQ9H4G1 147 aa4.07□□□□□ -1.76
CD44-221ENST00000526000 RNF213Q63HN8 5207 aa4.07□□□□□ -1.76
CD44-221ENST00000526000 TRAV13-1A0A0B4J241 112 aa4.06□□□□□ -1.76
CD44-221ENST00000526000 TINCRA0A1B0GVN0 87 aa4.06□□□□□ -1.76
CD44-221ENST00000526000 A0A1W2PNN7 141 aa4.06□□□□□ -1.76
CD44-221ENST00000526000 F8WDY8 70 aa4.06□□□□□ -1.76
CD44-221ENST00000526000 APOMO95445 188 aa4.06□□□□□ -1.76
CD44-221ENST00000526000 FOXI1Q12951 378 aa4.06□□□□□ -1.76
CD44-221ENST00000526000 Q6ZRP5 223 aa4.06□□□□□ -1.76
CD44-221ENST00000526000 LINC00173Q6ZV60 143 aa4.06□□□□□ -1.76
CD44-221ENST00000526000 FAM19A2Q8N3H0 131 aa4.06□□□□□ -1.76
CD44-221ENST00000526000 MAP1LC3CQ9BXW4 147 aa4.06□□□□□ -1.76
CD44-221ENST00000526000 TNXBP22105 4242 aa4.06□□□□□ -1.76
CD44-221ENST00000526000 A0A087WZ39 114 aa4.05□□□□□ -1.76
CD44-221ENST00000526000 GVQW2A0A096LPI5 108 aaPredicted RBP4.05□□□□□ -1.76
CD44-221ENST00000526000 IGHV3OR16-9A0A0B4J2B5 98 aa4.05□□□□□ -1.76
CD44-221ENST00000526000 IGHV1-58A0A0C4DH39 117 aa4.05□□□□□ -1.76
CD44-221ENST00000526000 H3BRM9 83 aa4.05□□□□□ -1.76
CD44-221ENST00000526000 ZNF561-AS1K7EIQ3 104 aa4.05□□□□□ -1.76
CD44-221ENST00000526000 COX7A2LO14548 114 aa4.05□□□□□ -1.76
CD44-221ENST00000526000 NUPR1O60356 82 aa4.05□□□□□ -1.76
CD44-221ENST00000526000 IGLC3P0DOY3 106 aa4.05□□□□□ -1.76
CD44-221ENST00000526000 S100A2P29034 98 aa4.05□□□□□ -1.76
CD44-221ENST00000526000 SYCNQ0VAF6 134 aa4.05□□□□□ -1.76
CD44-221ENST00000526000 PMCHL1Q16048 86 aa4.05□□□□□ -1.76
CD44-221ENST00000526000 LINC00242Q5T6M2 205 aa4.05□□□□□ -1.76
CD44-221ENST00000526000 PHF5AQ7RTV0 110 aaKnown RBP4.05□□□□□ -1.76
CD44-221ENST00000526000 PRR26Q8N8Z3 221 aa4.05□□□□□ -1.76
CD44-221ENST00000526000 CARD19Q96LW7 228 aa4.05□□□□□ -1.76
CD44-221ENST00000526000 OPRPNQ99935 248 aaPredicted RBP4.05□□□□□ -1.76
CD44-221ENST00000526000 GEMIN7Q9H840 131 aaKnown RBP4.05□□□□□ -1.76
CD44-221ENST00000526000 IGLV5-45A0A087WSX0 123 aa4.04□□□□□ -1.76
CD44-221ENST00000526000 C5orf52A6NGY3 159 aa4.04□□□□□ -1.76
CD44-221ENST00000526000 F8VRH5 84 aa4.04□□□□□ -1.76
CD44-221ENST00000526000 MALP21145 153 aa4.04□□□□□ -1.76
CD44-221ENST00000526000 PLNP26678 52 aa4.04□□□□□ -1.76
CD44-221ENST00000526000 RNASE13Q5GAN3 156 aaKnown RBP4.04□□□□□ -1.76
CD44-221ENST00000526000 C1orf137Q5JT78 98 aa4.04□□□□□ -1.76
CD44-221ENST00000526000 PET117Q6UWS5 81 aa4.04□□□□□ -1.76
CD44-221ENST00000526000 OR10D4PQ8NGN7 298 aa4.04□□□□□ -1.76
CD44-221ENST00000526000 PKIGQ9Y2B9 76 aa4.04□□□□□ -1.76
CD44-221ENST00000526000 CHTOPQ9Y3Y2 248 aaKnown RBP4.04□□□□□ -1.76
CD44-221ENST00000526000 IGLV4-69A0A075B6H9 119 aa4.03□□□□□ -1.76
CD44-221ENST00000526000 C20orf202A1L168 122 aa4.03□□□□□ -1.76
CD44-221ENST00000526000 FABP4P15090 132 aa4.03□□□□□ -1.76
CD44-221ENST00000526000 PTTG1IPP53801 180 aa4.03□□□□□ -1.76
CD44-221ENST00000526000 C9orf116Q5BN46 136 aaPredicted RBP4.03□□□□□ -1.76
CD44-221ENST00000526000 SFTA2Q6UW10 78 aa4.03□□□□□ -1.76
CD44-221ENST00000526000 C5orf38Q86SI9 138 aa4.03□□□□□ -1.76
CD44-221ENST00000526000 HIST3H2BBQ8N257 126 aa4.03□□□□□ -1.76
CD44-221ENST00000526000 PSORS1C2Q9UIG4 136 aa4.03□□□□□ -1.76
CD44-221ENST00000526000 LOC107984640A0A0U1RRK4 108 aa4.02□□□□□ -1.77
CD44-221ENST00000526000 C11orf86A6NJI1 115 aa4.02□□□□□ -1.77
CD44-221ENST00000526000 SYS1-DBNDD2H3BUS1 97 aa4.02□□□□□ -1.77
CD44-221ENST00000526000 DPM2O94777 84 aa4.02□□□□□ -1.77
CD44-221ENST00000526000 CXCL5P42830 114 aa4.02□□□□□ -1.77
CD44-221ENST00000526000 SNRPEP62304 92 aaKnown RBP4.02□□□□□ -1.77
CD44-221ENST00000526000 RPL18AQ02543 176 aaKnown RBP4.02□□□□□ -1.77
CD44-221ENST00000526000 LCE2CQ5TA81 110 aa4.02□□□□□ -1.77
CD44-221ENST00000526000 LINC01545Q5VT33 79 aa4.02□□□□□ -1.77
CD44-221ENST00000526000 LINC00469Q8N7U9 141 aa4.02□□□□□ -1.77
CD44-221ENST00000526000 C2orf48Q96LS8 159 aa4.02□□□□□ -1.77
CD44-221ENST00000526000 HIST1H2BLQ99880 126 aa4.02□□□□□ -1.77
CD44-221ENST00000526000 LINC00474Q9P2X8 69 aa4.02□□□□□ -1.77
CD44-221ENST00000526000 IGKCP01834 107 aa4.01□□□□□ -1.77
CD44-221ENST00000526000 ZNF22P17026 224 aaPredicted RBP4.01□□□□□ -1.77
CD44-221ENST00000526000 HERVK_113P61574 105 aa4.01□□□□□ -1.77
CD44-221ENST00000526000 PRR4Q16378 134 aa4.01□□□□□ -1.77
CD44-221ENST00000526000 ZC2HC1BQ5TFG8 222 aa4.01□□□□□ -1.77
CD44-221ENST00000526000 KRTAP11-1Q8IUC1 163 aa4.01□□□□□ -1.77
CD44-221ENST00000526000 Q8IZM0 81 aa4.01□□□□□ -1.77
CD44-221ENST00000526000 CAMK2N2Q96S95 79 aa4.01□□□□□ -1.77
CD44-221ENST00000526000 MRPL35Q9NZE8 188 aaKnown RBP4.01□□□□□ -1.77
CD44-221ENST00000526000 CDKN2A-AS1Q9UH64 79 aa4.01□□□□□ -1.77
CD44-221ENST00000526000 IGLV5-39A0A0G2JS06 123 aa4□□□□□ -1.77
CD44-221ENST00000526000 FAM168BA1KXE4 195 aa4□□□□□ -1.77
CD44-221ENST00000526000 PRSS2P07478 247 aa4□□□□□ -1.77
CD44-221ENST00000526000 C3orf79P0CE67 100 aa4□□□□□ -1.77
CD44-221ENST00000526000 RNF151Q2KHN1 245 aa4□□□□□ -1.77
CD44-221ENST00000526000 TMEM170BQ5T4T1 132 aa4□□□□□ -1.77
CD44-221ENST00000526000 ORAOV1Q8WV07 137 aa4□□□□□ -1.77
CD44-221ENST00000526000 TMA7Q9Y2S6 64 aaKnown RBP4□□□□□ -1.77
CD44-221ENST00000526000 LPAP08519 4548 aa4□□□□□ -1.77
CD44-221ENST00000526000 TRBV30A0A0K0K1B3 111 aa3.99□□□□□ -1.77
CD44-221ENST00000526000 TMEM223A0PJW6 202 aa3.99□□□□□ -1.77
CD44-221ENST00000526000 SMIM1B2RUZ4 78 aa3.99□□□□□ -1.77
CD44-221ENST00000526000 H0Y8G0 127 aa3.99□□□□□ -1.77
CD44-221ENST00000526000 NDUFA1O15239 70 aa3.99□□□□□ -1.77
CD44-221ENST00000526000 TSPAN13O95857 204 aa3.99□□□□□ -1.77
CD44-221ENST00000526000 KRTDAPP60985 99 aa3.99□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms