RNA–Protein interactions for RNA: ENST00000525121.2

HMGB1P40-201, Transcript of high mobility group box 1 pseudogene 40, humanhuman

BASIC

Gene HMGB1P40, Length 540 nt, Biotype processed pseudogene.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P40-201ENST00000525121 NDUFC2-KCTD14E9PQ53 114 aa3.44□□□□□ -1.86
HMGB1P40-201ENST00000525121 INAFM2P0DMQ5 153 aa3.44□□□□□ -1.86
HMGB1P40-201ENST00000525121 KIAA0087Q14695 138 aa3.44□□□□□ -1.86
HMGB1P40-201ENST00000525121 C2orf82Q6UX34 121 aa3.44□□□□□ -1.86
HMGB1P40-201ENST00000525121 C6orf48Q9UBA6 75 aa3.44□□□□□ -1.86
HMGB1P40-201ENST00000525121 C11orf86A6NJI1 115 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 PANO1I0J062 215 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 HIST1H2BKO60814 126 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 ATP6V1G1O75348 118 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 HIST1H2BJP06899 126 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 TLX1NBP0CAT3 122 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 FABP4P15090 132 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 ZNF22P17026 224 aaPredicted RBP3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 HIST1H2BOP23527 126 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 PLNP26678 52 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 HIST1H2BBP33778 126 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 HIST1H2BDP58876 126 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 HIST1H2BCP62807 126 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 HIST2H2BEQ16778 126 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 GAGE2EQ4V326 116 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 C10orf25Q5T742 122 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 HIST1H2BHQ93079 126 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 HIST1H2BNQ99877 126 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 HIST1H2BMQ99879 126 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 MAP1LC3CQ9BXW4 147 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 GAGE2DQ9UEU5 116 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 DNAH11Q96DT5 4516 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 HERVK_113P61574 105 aa3.42□□□□□ -1.86
HMGB1P40-201ENST00000525121 C9orf116Q5BN46 136 aaPredicted RBP3.42□□□□□ -1.86
HMGB1P40-201ENST00000525121 IGLV5-39A0A0G2JS06 123 aa3.41□□□□□ -1.86
HMGB1P40-201ENST00000525121 DPM2O94777 84 aa3.41□□□□□ -1.86
HMGB1P40-201ENST00000525121 LINC00310P59036 64 aa3.41□□□□□ -1.86
HMGB1P40-201ENST00000525121 ODF1Q14990 250 aa3.41□□□□□ -1.86
HMGB1P40-201ENST00000525121 Q6ZRP5 223 aa3.41□□□□□ -1.86
HMGB1P40-201ENST00000525121 FAM19A5Q7Z5A7 132 aaPredicted RBP3.41□□□□□ -1.86
HMGB1P40-201ENST00000525121 KRTAP4-5Q9BYR2 181 aa3.41□□□□□ -1.86
HMGB1P40-201ENST00000525121 TMEM223A0PJW6 202 aa3.4□□□□□ -1.87
HMGB1P40-201ENST00000525121 C20orf202A1L168 122 aa3.4□□□□□ -1.87
HMGB1P40-201ENST00000525121 LINC00587B1AMM8 73 aa3.4□□□□□ -1.87
HMGB1P40-201ENST00000525121 M0QXV9 152 aa3.4□□□□□ -1.87
HMGB1P40-201ENST00000525121 NUPR1O60356 82 aa3.4□□□□□ -1.87
HMGB1P40-201ENST00000525121 IGKCP01834 107 aa3.4□□□□□ -1.87
HMGB1P40-201ENST00000525121 HERV-K104P63124 156 aa3.4□□□□□ -1.87
HMGB1P40-201ENST00000525121 UBE2BP63146 152 aa3.4□□□□□ -1.87
HMGB1P40-201ENST00000525121 COX17Q14061 63 aa3.4□□□□□ -1.87
HMGB1P40-201ENST00000525121 LBHQ53QV2 105 aaPredicted RBP3.4□□□□□ -1.87
HMGB1P40-201ENST00000525121 PLEKHB2Q96CS7 222 aa3.4□□□□□ -1.87
HMGB1P40-201ENST00000525121 ERG28Q9UKR5 140 aa3.4□□□□□ -1.87
HMGB1P40-201ENST00000525121 MYMXA0A1B0GTQ4 84 aa3.39□□□□□ -1.87
HMGB1P40-201ENST00000525121 A0A1W2PNN7 141 aa3.39□□□□□ -1.87
HMGB1P40-201ENST00000525121 SYS1-DBNDD2H3BUS1 97 aa3.39□□□□□ -1.87
HMGB1P40-201ENST00000525121 S100A6P06703 90 aa3.39□□□□□ -1.87
HMGB1P40-201ENST00000525121 LGALS3P17931 250 aaKnown RBP3.39□□□□□ -1.87
HMGB1P40-201ENST00000525121 S100A2P29034 98 aa3.39□□□□□ -1.87
HMGB1P40-201ENST00000525121 PFN2P35080 140 aa3.39□□□□□ -1.87
HMGB1P40-201ENST00000525121 AKR1D1P51857 326 aa3.39□□□□□ -1.87
HMGB1P40-201ENST00000525121 KRTDAPP60985 99 aa3.39□□□□□ -1.87
HMGB1P40-201ENST00000525121 PRR3P79522 188 aaKnown RBP3.39□□□□□ -1.87
HMGB1P40-201ENST00000525121 MEIG1Q5JSS6 88 aa3.39□□□□□ -1.87
HMGB1P40-201ENST00000525121 COA6Q5JTJ3 125 aaKnown RBP3.39□□□□□ -1.87
HMGB1P40-201ENST00000525121 NKAPP1Q8N9T2 125 aa3.39□□□□□ -1.87
HMGB1P40-201ENST00000525121 PMCHL2Q9BQD1 86 aa3.39□□□□□ -1.87
HMGB1P40-201ENST00000525121 XAGE1AQ9HD64 81 aa3.39□□□□□ -1.87
HMGB1P40-201ENST00000525121 DYNC1H1Q14204 4646 aaKnown RBP3.38□□□□□ -1.87
HMGB1P40-201ENST00000525121 FAM168BA1KXE4 195 aa3.38□□□□□ -1.87
HMGB1P40-201ENST00000525121 J3QL48 77 aa3.38□□□□□ -1.87
HMGB1P40-201ENST00000525121 LEPROTO15243 131 aa3.38□□□□□ -1.87
HMGB1P40-201ENST00000525121 NMUP48645 174 aa3.38□□□□□ -1.87
HMGB1P40-201ENST00000525121 LINC00158P58513 81 aa3.38□□□□□ -1.87
HMGB1P40-201ENST00000525121 RPL24P83731 157 aaKnown RBP3.38□□□□□ -1.87
HMGB1P40-201ENST00000525121 C9orf129Q5T035 196 aaKnown RBP3.38□□□□□ -1.87
HMGB1P40-201ENST00000525121 PET117Q6UWS5 81 aa3.38□□□□□ -1.87
HMGB1P40-201ENST00000525121 PHF5AQ7RTV0 110 aaKnown RBP3.38□□□□□ -1.87
HMGB1P40-201ENST00000525121 SVIPQ8NHG7 77 aa3.38□□□□□ -1.87
HMGB1P40-201ENST00000525121 ZNF625Q96I27 306 aaPredicted RBP3.38□□□□□ -1.87
HMGB1P40-201ENST00000525121 KRTAP17-1Q9BYP8 105 aa3.38□□□□□ -1.87
HMGB1P40-201ENST00000525121 NDUFA12Q9UI09 145 aa3.38□□□□□ -1.87
HMGB1P40-201ENST00000525121 LRP1BQ9NZR2 4599 aa3.38□□□□□ -1.87
HMGB1P40-201ENST00000525121 J3QQQ9 107 aa3.37□□□□□ -1.87
HMGB1P40-201ENST00000525121 C1orf137Q5JT78 98 aa3.37□□□□□ -1.87
HMGB1P40-201ENST00000525121 MRPL55Q7Z7F7 128 aaKnown RBP3.37□□□□□ -1.87
HMGB1P40-201ENST00000525121 SND1-IT1Q9HBX3 110 aa3.37□□□□□ -1.87
HMGB1P40-201ENST00000525121 TP73-AS1Q9UF72 201 aa3.37□□□□□ -1.87
HMGB1P40-201ENST00000525121 TMA7Q9Y2S6 64 aaKnown RBP3.37□□□□□ -1.87
HMGB1P40-201ENST00000525121 KIAA1109Q2LD37 5005 aa3.37□□□□□ -1.87
HMGB1P40-201ENST00000525121 A0A0U1RRA0 63 aa3.36□□□□□ -1.87
HMGB1P40-201ENST00000525121 C3orf79P0CE67 100 aa3.36□□□□□ -1.87
HMGB1P40-201ENST00000525121 C4orf48Q5BLP8 95 aa3.36□□□□□ -1.87
HMGB1P40-201ENST00000525121 SERTAD4-AS1Q5TG53 156 aa3.36□□□□□ -1.87
HMGB1P40-201ENST00000525121 LINC01545Q5VT33 79 aa3.36□□□□□ -1.87
HMGB1P40-201ENST00000525121 REG3GQ6UW15 175 aa3.36□□□□□ -1.87
HMGB1P40-201ENST00000525121 MIEN1Q9BRT3 115 aa3.36□□□□□ -1.87
HMGB1P40-201ENST00000525121 PSORS1C2Q9UIG4 136 aa3.36□□□□□ -1.87
HMGB1P40-201ENST00000525121 PLA2G2DQ9UNK4 145 aa3.36□□□□□ -1.87
HMGB1P40-201ENST00000525121 C22orf24Q9Y442 160 aa3.36□□□□□ -1.87
HMGB1P40-201ENST00000525121 HERC2O95714 4834 aa3.35□□□□□ -1.87
HMGB1P40-201ENST00000525121 HSPG2P98160 4391 aa3.35□□□□□ -1.87
HMGB1P40-201ENST00000525121 IGLV5-37A0A075B6J1 123 aa3.35□□□□□ -1.87
HMGB1P40-201ENST00000525121 GAGE10A6NGK3 116 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms