RNA–Protein interactions for RNA: ENST00000522353.2

PCDHA3-201, Transcript of protocadherin alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA3, Length 5,260 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-201ENST00000522353 REG3GQ6UW15 175 aa11.6□□□□□ -0.55
PCDHA3-201ENST00000522353 LYPD5Q6UWN5 251 aa11.59□□□□□ -0.55
PCDHA3-201ENST00000522353 FHL3Q13643 280 aa11.59□□□□□ -0.55
PCDHA3-201ENST00000522353 WFDC13Q8IUB5 93 aa11.59□□□□□ -0.55
PCDHA3-201ENST00000522353 K7ERS5 55 aa11.59□□□□□ -0.55
PCDHA3-201ENST00000522353 ATP5EP56381 51 aaPredicted RBP11.59□□□□□ -0.55
PCDHA3-201ENST00000522353 SERP2Q8N6R1 65 aa11.58□□□□□ -0.56
PCDHA3-201ENST00000522353 C2orf48Q96LS8 159 aa11.58□□□□□ -0.56
PCDHA3-201ENST00000522353 BRK1Q8WUW1 75 aa11.58□□□□□ -0.56
PCDHA3-201ENST00000522353 ADAMTS20P59510 1910 aa11.57□□□□□ -0.56
PCDHA3-201ENST00000522353 NDUFC2-KCTD14E9PQ53 114 aa11.57□□□□□ -0.56
PCDHA3-201ENST00000522353 LINC00694P0DN24 101 aa11.57□□□□□ -0.56
PCDHA3-201ENST00000522353 TRBV10-3A0A0K0K1G6 114 aa11.56□□□□□ -0.56
PCDHA3-201ENST00000522353 COX6A2Q02221 97 aa11.55□□□□□ -0.56
PCDHA3-201ENST00000522353 C9orf116Q5BN46 136 aaPredicted RBP11.55□□□□□ -0.56
PCDHA3-201ENST00000522353 NTM-AS1Q6ZSK4 140 aa11.55□□□□□ -0.56
PCDHA3-201ENST00000522353 V9GYY9 64 aa11.55□□□□□ -0.56
PCDHA3-201ENST00000522353 EPG5Q9HCE0 2579 aa11.55□□□□□ -0.56
PCDHA3-201ENST00000522353 PRR15LQ9BU68 103 aa11.55□□□□□ -0.56
PCDHA3-201ENST00000522353 EXPH5Q8NEV8 1989 aa11.54□□□□□ -0.56
PCDHA3-201ENST00000522353 LINC01556Q5JQF7 62 aa11.54□□□□□ -0.56
PCDHA3-201ENST00000522353 URB1-AS1Q96HZ7 61 aa11.54□□□□□ -0.56
PCDHA3-201ENST00000522353 MRPL55Q7Z7F7 128 aaKnown RBP11.54□□□□□ -0.56
PCDHA3-201ENST00000522353 Q8N9L7 120 aa11.54□□□□□ -0.56
PCDHA3-201ENST00000522353 CIRBP-AS1Q8TBR5 109 aa11.54□□□□□ -0.56
PCDHA3-201ENST00000522353 C1orf137Q5JT78 98 aa11.53□□□□□ -0.56
PCDHA3-201ENST00000522353 SVIPQ8NHG7 77 aa11.53□□□□□ -0.56
PCDHA3-201ENST00000522353 Q6JHZ5 121 aa11.53□□□□□ -0.56
PCDHA3-201ENST00000522353 MPLKIPQ8TAP9 179 aa11.53□□□□□ -0.56
PCDHA3-201ENST00000522353 AMELXQ99217 191 aa11.53□□□□□ -0.56
PCDHA3-201ENST00000522353 SPTSSBQ8NFR3 76 aa11.52□□□□□ -0.56
PCDHA3-201ENST00000522353 SRCAPQ6ZRS2 3230 aa11.52□□□□□ -0.56
PCDHA3-201ENST00000522353 LINC01561Q8N1V8 128 aa11.51□□□□□ -0.57
PCDHA3-201ENST00000522353 FAM240AA0A1B0GVK7 77 aa11.51□□□□□ -0.57
PCDHA3-201ENST00000522353 Q8N814 137 aa11.5□□□□□ -0.57
PCDHA3-201ENST00000522353 ACANP16112 2415 aa11.49□□□□□ -0.57
PCDHA3-201ENST00000522353 PRYO14603 147 aa11.48□□□□□ -0.57
PCDHA3-201ENST00000522353 Q6ZSN1 163 aa11.47□□□□□ -0.57
PCDHA3-201ENST00000522353 COX7CP15954 63 aa11.47□□□□□ -0.57
PCDHA3-201ENST00000522353 CPAMD8Q8IZJ3 1885 aa11.47□□□□□ -0.57
PCDHA3-201ENST00000522353 SNURFQ9Y675 71 aa11.46□□□□□ -0.57
PCDHA3-201ENST00000522353 SERP1Q9Y6X1 66 aa11.46□□□□□ -0.57
PCDHA3-201ENST00000522353 KRTAP24-1Q3LI83 254 aa11.46□□□□□ -0.58
PCDHA3-201ENST00000522353 MDFIQ99750 246 aa11.46□□□□□ -0.58
PCDHA3-201ENST00000522353 TSPEAR-AS2P59090 65 aa11.45□□□□□ -0.58
PCDHA3-201ENST00000522353 EML5Q05BV3 1969 aa11.45□□□□□ -0.58
PCDHA3-201ENST00000522353 Q9BRP9 147 aa11.44□□□□□ -0.58
PCDHA3-201ENST00000522353 FLNBO75369 2602 aaKnown RBP11.44□□□□□ -0.58
PCDHA3-201ENST00000522353 XGP55808 180 aa11.44□□□□□ -0.58
PCDHA3-201ENST00000522353 F8P00451 2351 aa11.43□□□□□ -0.58
PCDHA3-201ENST00000522353 AGRNO00468 2067 aa11.43□□□□□ -0.58
PCDHA3-201ENST00000522353 PRR3P79522 188 aaKnown RBP11.43□□□□□ -0.58
PCDHA3-201ENST00000522353 CELA1Q9UNI1 258 aa11.43□□□□□ -0.58
PCDHA3-201ENST00000522353 Q6ZRU5 148 aa11.42□□□□□ -0.58
PCDHA3-201ENST00000522353 Q6Q795 121 aa11.42□□□□□ -0.58
PCDHA3-201ENST00000522353 C11orf72Q8NBR9 251 aa11.42□□□□□ -0.58
PCDHA3-201ENST00000522353 ADAMTSL4-AS1Q5T5F5 129 aa11.41□□□□□ -0.58
PCDHA3-201ENST00000522353 Q6ZVQ6 151 aa11.41□□□□□ -0.58
PCDHA3-201ENST00000522353 A0A096LNJ9 63 aa11.4□□□□□ -0.58
PCDHA3-201ENST00000522353 FAM30AQ9NZY2 134 aa11.4□□□□□ -0.58
PCDHA3-201ENST00000522353 ESRGQ1W209 222 aa11.4□□□□□ -0.58
PCDHA3-201ENST00000522353 TET2Q6N021 2002 aaPredicted RBP11.4□□□□□ -0.58
PCDHA3-201ENST00000522353 H3BNG1 76 aa11.39□□□□□ -0.59
PCDHA3-201ENST00000522353 PRR4Q16378 134 aa11.39□□□□□ -0.59
PCDHA3-201ENST00000522353 LIMD2Q9BT23 127 aa11.39□□□□□ -0.59
PCDHA3-201ENST00000522353 A0A087WYN8 130 aa11.39□□□□□ -0.59
PCDHA3-201ENST00000522353 ANKRD17O75179 2603 aaKnown RBP11.39□□□□□ -0.59
PCDHA3-201ENST00000522353 TRAV7A0A075B6U4 112 aa11.38□□□□□ -0.59
PCDHA3-201ENST00000522353 IGHV6-1A0A0B4J1U7 121 aa11.37□□□□□ -0.59
PCDHA3-201ENST00000522353 KIF25-AS1Q9Y6Z4 181 aa11.36□□□□□ -0.59
PCDHA3-201ENST00000522353 A0A087WSZ3 146 aa11.35□□□□□ -0.59
PCDHA3-201ENST00000522353 SBSPONQ8IVN8 264 aa11.35□□□□□ -0.59
PCDHA3-201ENST00000522353 A6NED7 52 aa11.35□□□□□ -0.59
PCDHA3-201ENST00000522353 C22orf24Q9Y442 160 aa11.35□□□□□ -0.59
PCDHA3-201ENST00000522353 MUC4Q99102 2169 aa11.34□□□□□ -0.59
PCDHA3-201ENST00000522353 LINC00208Q96KT6 92 aa11.33□□□□□ -0.6
PCDHA3-201ENST00000522353 CCDC179H3BU77 68 aa11.32□□□□□ -0.6
PCDHA3-201ENST00000522353 PRLHP81277 87 aa11.32□□□□□ -0.6
PCDHA3-201ENST00000522353 CENPFP49454 3210 aa11.31□□□□□ -0.6
PCDHA3-201ENST00000522353 LINC00575Q6W349 94 aa11.31□□□□□ -0.6
PCDHA3-201ENST00000522353 X6R8D5 127 aa11.3□□□□□ -0.6
PCDHA3-201ENST00000522353 SMCR5Q8TEV8 140 aa11.3□□□□□ -0.6
PCDHA3-201ENST00000522353 IGHV3OR16-9A0A0B4J2B5 98 aa11.3□□□□□ -0.6
PCDHA3-201ENST00000522353 LINC01547P58512 204 aaPredicted RBP11.29□□□□□ -0.6
PCDHA3-201ENST00000522353 FAM19A4Q96LR4 140 aa11.28□□□□□ -0.6
PCDHA3-201ENST00000522353 WWC2-AS2Q96NR7 200 aa11.28□□□□□ -0.6
PCDHA3-201ENST00000522353 SMIM26A0A096LP01 95 aa11.28□□□□□ -0.6
PCDHA3-201ENST00000522353 Q8N3U1 123 aa11.28□□□□□ -0.6
PCDHA3-201ENST00000522353 LINC00337Q8N6G1 96 aa11.28□□□□□ -0.6
PCDHA3-201ENST00000522353 COL4A2P08572 1712 aa11.27□□□□□ -0.6
PCDHA3-201ENST00000522353 IGLV5-39A0A0G2JS06 123 aa11.27□□□□□ -0.61
PCDHA3-201ENST00000522353 FAM229AH3BQW9 127 aa11.27□□□□□ -0.61
PCDHA3-201ENST00000522353 A0A087WVE0 104 aa11.27□□□□□ -0.61
PCDHA3-201ENST00000522353 A0A0U1RQV1 116 aa11.26□□□□□ -0.61
PCDHA3-201ENST00000522353 NBDYA0A0U1RRE5 68 aa11.25□□□□□ -0.61
PCDHA3-201ENST00000522353 LINC00315P59091 139 aa11.24□□□□□ -0.61
PCDHA3-201ENST00000522353 LINC01546A6NGU7 62 aa11.24□□□□□ -0.61
PCDHA3-201ENST00000522353 TRBV7-6A0A0J9YX20 115 aa11.22□□□□□ -0.61
PCDHA3-201ENST00000522353 A8MTW9 85 aa11.21□□□□□ -0.61
PCDHA3-201ENST00000522353 LINC00167Q96N53 147 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 128 ms