RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 C8orf49Q96NF6 230 aa5.62□□□□□ -1.51
LIMCH1-219ENST00000514096 HUWE1Q7Z6Z7 4374 aaKnown RBP5.62□□□□□ -1.51
LIMCH1-219ENST00000514096 TMEM256-PLSCR3K7ERE1 68 aa5.62□□□□□ -1.51
LIMCH1-219ENST00000514096 Q6ZTI0 123 aa5.62□□□□□ -1.51
LIMCH1-219ENST00000514096 A0A1B0GXF2 115 aa5.61□□□□□ -1.51
LIMCH1-219ENST00000514096 H7C423 109 aa5.61□□□□□ -1.51
LIMCH1-219ENST00000514096 SPART-AS1P0CW21 52 aa5.61□□□□□ -1.51
LIMCH1-219ENST00000514096 XCL1P47992 114 aa5.61□□□□□ -1.51
LIMCH1-219ENST00000514096 CMC4P56277 68 aaPredicted RBP5.61□□□□□ -1.51
LIMCH1-219ENST00000514096 RMI2Q96E14 147 aa5.61□□□□□ -1.51
LIMCH1-219ENST00000514096 ACYP1P07311 99 aa5.61□□□□□ -1.51
LIMCH1-219ENST00000514096 A0A096LNJ9 63 aa5.61□□□□□ -1.51
LIMCH1-219ENST00000514096 PLNP26678 52 aa5.61□□□□□ -1.51
LIMCH1-219ENST00000514096 PRR9Q5T870 116 aa5.61□□□□□ -1.51
LIMCH1-219ENST00000514096 Q8N8P6 123 aa5.61□□□□□ -1.51
LIMCH1-219ENST00000514096 SPANXDQ9BXN6 97 aa5.61□□□□□ -1.51
LIMCH1-219ENST00000514096 X6R8D5 127 aa5.61□□□□□ -1.51
LIMCH1-219ENST00000514096 TRIAP1O43715 76 aa5.6□□□□□ -1.51
LIMCH1-219ENST00000514096 MGPP08493 103 aa5.6□□□□□ -1.51
LIMCH1-219ENST00000514096 FUSP35637 526 aaKnown RBP eCLIP5.6□□□□□ -1.51
LIMCH1-219ENST00000514096 FP248Q71RG6 208 aaPredicted RBP5.6□□□□□ -1.51
LIMCH1-219ENST00000514096 MUSTN1Q8IVN3 82 aa5.6□□□□□ -1.51
LIMCH1-219ENST00000514096 VCYO14598 125 aa5.6□□□□□ -1.51
LIMCH1-219ENST00000514096 FAM167A-AS1Q96KT0 104 aa5.6□□□□□ -1.51
LIMCH1-219ENST00000514096 CCKP06307 115 aa5.6□□□□□ -1.51
LIMCH1-219ENST00000514096 BAALC-AS2P0C853 105 aa5.6□□□□□ -1.51
LIMCH1-219ENST00000514096 SMCR5Q8TEV8 140 aa5.6□□□□□ -1.51
LIMCH1-219ENST00000514096 M0R381 172 aa5.59□□□□□ -1.51
LIMCH1-219ENST00000514096 IGHV3-33P01772 117 aa5.59□□□□□ -1.51
LIMCH1-219ENST00000514096 SOCS3O14543 225 aa5.59□□□□□ -1.51
LIMCH1-219ENST00000514096 Q8NAQ8 132 aa5.59□□□□□ -1.51
LIMCH1-219ENST00000514096 IGHV4-4A0A075B6R2 117 aa5.58□□□□□ -1.52
LIMCH1-219ENST00000514096 TRGV4A0A0C4DH28 118 aa5.58□□□□□ -1.52
LIMCH1-219ENST00000514096 UBE2L6O14933 153 aa5.58□□□□□ -1.52
LIMCH1-219ENST00000514096 PAPPA-AS1Q5QFB9 102 aa5.58□□□□□ -1.52
LIMCH1-219ENST00000514096 NRACQ8N912 160 aa5.58□□□□□ -1.52
LIMCH1-219ENST00000514096 F8VRH5 84 aa5.58□□□□□ -1.52
LIMCH1-219ENST00000514096 NXPH4O95158 308 aa5.58□□□□□ -1.52
LIMCH1-219ENST00000514096 UBE2D1P51668 147 aa5.58□□□□□ -1.52
LIMCH1-219ENST00000514096 ZNF492Q9P255 531 aa5.58□□□□□ -1.52
LIMCH1-219ENST00000514096 LYSTQ99698 3801 aa5.58□□□□□ -1.52
LIMCH1-219ENST00000514096 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.57□□□□□ -1.52
LIMCH1-219ENST00000514096 MIFP14174 115 aa5.57□□□□□ -1.52
LIMCH1-219ENST00000514096 MSRB1Q9NZV6 116 aa5.57□□□□□ -1.52
LIMCH1-219ENST00000514096 ICOSQ9Y6W8 199 aa5.57□□□□□ -1.52
LIMCH1-219ENST00000514096 F5H697 171 aa5.57□□□□□ -1.52
LIMCH1-219ENST00000514096 C3orf84H3BNL1 204 aa5.57□□□□□ -1.52
LIMCH1-219ENST00000514096 COX7A2LO14548 114 aa5.57□□□□□ -1.52
LIMCH1-219ENST00000514096 C14orf132Q9NPU4 83 aa5.57□□□□□ -1.52
LIMCH1-219ENST00000514096 IGHV1OR15-1A0A075B7D0 117 aa5.56□□□□□ -1.52
LIMCH1-219ENST00000514096 HAMPP81172 84 aa5.56□□□□□ -1.52
LIMCH1-219ENST00000514096 C14orf178Q8N769 122 aaPredicted RBP5.56□□□□□ -1.52
LIMCH1-219ENST00000514096 Q9HAA7 133 aa5.56□□□□□ -1.52
LIMCH1-219ENST00000514096 GAS8-AS1O95177 125 aa5.56□□□□□ -1.52
LIMCH1-219ENST00000514096 LAGE3Q14657 143 aa5.56□□□□□ -1.52
LIMCH1-219ENST00000514096 LYPD1Q8N2G4 141 aa5.56□□□□□ -1.52
LIMCH1-219ENST00000514096 C6orf223Q8N319 242 aa5.56□□□□□ -1.52
LIMCH1-219ENST00000514096 PRR26Q8N8Z3 221 aa5.56□□□□□ -1.52
LIMCH1-219ENST00000514096 STARD9Q9P2P6 4700 aa5.56□□□□□ -1.52
LIMCH1-219ENST00000514096 LOC100131303A0A0U1RQF7 123 aa5.56□□□□□ -1.52
LIMCH1-219ENST00000514096 PRR4Q16378 134 aa5.56□□□□□ -1.52
LIMCH1-219ENST00000514096 ENHOQ6UWT2 76 aa5.56□□□□□ -1.52
LIMCH1-219ENST00000514096 CSNK1G2-AS1Q8NCQ2 148 aa5.56□□□□□ -1.52
LIMCH1-219ENST00000514096 TIMM21Q9BVV7 248 aa5.56□□□□□ -1.52
LIMCH1-219ENST00000514096 ZNF80P51504 273 aaPredicted RBP5.55□□□□□ -1.52
LIMCH1-219ENST00000514096 KLK9Q2XQG4 91 aa5.55□□□□□ -1.52
LIMCH1-219ENST00000514096 FAM19A3Q7Z5A8 133 aa5.55□□□□□ -1.52
LIMCH1-219ENST00000514096 TRAV10A0A0B4J240 114 aa5.55□□□□□ -1.52
LIMCH1-219ENST00000514096 ZNF876PQ49A33 203 aa5.55□□□□□ -1.52
LIMCH1-219ENST00000514096 NUPR2A6NF83 97 aa5.54□□□□□ -1.52
LIMCH1-219ENST00000514096 REG3AQ06141 175 aa5.54□□□□□ -1.52
LIMCH1-219ENST00000514096 IGKV3D-20A0A0C4DH25 116 aa5.54□□□□□ -1.52
LIMCH1-219ENST00000514096 SPANXN1Q5VSR9 72 aa5.54□□□□□ -1.52
LIMCH1-219ENST00000514096 DAND5Q8N907 189 aa5.54□□□□□ -1.52
LIMCH1-219ENST00000514096 IGKV3OR2-268A0A0C4DH90 116 aa5.53□□□□□ -1.52
LIMCH1-219ENST00000514096 C8orf87E5RJ46 101 aa5.53□□□□□ -1.52
LIMCH1-219ENST00000514096 IGHV3-38A0A0C4DH36 116 aa5.53□□□□□ -1.52
LIMCH1-219ENST00000514096 LAMTOR3Q9UHA4 124 aa5.53□□□□□ -1.52
LIMCH1-219ENST00000514096 RYR3Q15413 4870 aa5.53□□□□□ -1.52
LIMCH1-219ENST00000514096 ZFAND2AQ8N6M9 145 aa5.53□□□□□ -1.52
LIMCH1-219ENST00000514096 ADAMTSL4-AS1Q5T5F5 129 aa5.52□□□□□ -1.53
LIMCH1-219ENST00000514096 TMEM223A0PJW6 202 aa5.52□□□□□ -1.53
LIMCH1-219ENST00000514096 CHKB-CPT1BH3BT56 60 aa5.52□□□□□ -1.53
LIMCH1-219ENST00000514096 LINC00476Q8WZB0 136 aa5.52□□□□□ -1.53
LIMCH1-219ENST00000514096 PHLDA3Q9Y5J5 127 aa5.52□□□□□ -1.53
LIMCH1-219ENST00000514096 P0DMU3 169 aa5.52□□□□□ -1.53
LIMCH1-219ENST00000514096 FAM231AP0DMU4 169 aa5.52□□□□□ -1.53
LIMCH1-219ENST00000514096 FAM231CP0DMU5 169 aa5.52□□□□□ -1.53
LIMCH1-219ENST00000514096 TMEM263Q8WUH6 116 aaKnown RBP5.52□□□□□ -1.53
LIMCH1-219ENST00000514096 I3L3M4 83 aa5.51□□□□□ -1.53
LIMCH1-219ENST00000514096 ZNF73O43830 326 aaPredicted RBP5.51□□□□□ -1.53
LIMCH1-219ENST00000514096 IGHV3-30P01768 117 aa5.51□□□□□ -1.53
LIMCH1-219ENST00000514096 IGHV3-30-5P0DP03 117 aa5.51□□□□□ -1.53
LIMCH1-219ENST00000514096 GYPEP15421 78 aa5.51□□□□□ -1.53
LIMCH1-219ENST00000514096 C16orf74Q96GX8 76 aa5.51□□□□□ -1.53
LIMCH1-219ENST00000514096 C11orf21Q9P2W6 132 aa5.51□□□□□ -1.53
LIMCH1-219ENST00000514096 LECT2O14960 151 aa5.51□□□□□ -1.53
LIMCH1-219ENST00000514096 IGHV3-30-3P0DP02 117 aa5.51□□□□□ -1.53
LIMCH1-219ENST00000514096 C5orf38Q86SI9 138 aa5.51□□□□□ -1.53
LIMCH1-219ENST00000514096 ZNF706Q9Y5V0 76 aaPredicted RBP5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms